Basic Information

Insect: Bactrocera latifrons
Gene Symbol: -
Assembly: GCA_001853355.1
Location: NW:1747446-1750401[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.017 0.96 9.6 3.0 1 23 126 149 126 150 0.95

2 13 0.0032 0.18 11.8 1.2 2 23 155 177 154 177 0.91

3 13 1.1e-06 5.9e-05 22.8 5.5 2 23 187 209 186 210 0.96

4 13 0.00036 0.02 14.8 11.5 2 23 423 444 423 444 0.98

5 13 7.6e-06 0.00042 20.1 4.8 1 23 450 473 450 474 0.93

6 13 3.3e-05 0.0018 18.1 0.2 1 23 478 501 478 501 0.98

7 13 3.8e-06 0.00021 21.1 4.0 1 23 511 533 511 533 0.96

8 13 0.084 4.7 7.4 2.1 1 23 538 560 538 561 0.94

9 13 1.8e-07 1e-05 25.2 0.4 1 23 567 589 567 589 0.96

10 13 6.8e-06 0.00038 20.3 0.5 1 23 595 617 595 617 0.98

11 13 6.7e-07 3.7e-05 23.4 1.7 3 23 625 645 624 645 0.99

12 13 6.6e-08 3.7e-06 26.6 0.2 1 23 651 673 651 673 0.99

13 13 0.026 1.4 9.0 0.0 1 23 678 701 678 701 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.017	0.96	9.6	3.0	1	23	126	149	126	150	0.95
2	13	0.0032	0.18	11.8	1.2	2	23	155	177	154	177	0.91
3	13	1.1e-06	5.9e-05	22.8	5.5	2	23	187	209	186	210	0.96
4	13	0.00036	0.02	14.8	11.5	2	23	423	444	423	444	0.98
5	13	7.6e-06	0.00042	20.1	4.8	1	23	450	473	450	474	0.93
6	13	3.3e-05	0.0018	18.1	0.2	1	23	478	501	478	501	0.98
7	13	3.8e-06	0.00021	21.1	4.0	1	23	511	533	511	533	0.96
8	13	0.084	4.7	7.4	2.1	1	23	538	560	538	561	0.94
9	13	1.8e-07	1e-05	25.2	0.4	1	23	567	589	567	589	0.96
10	13	6.8e-06	0.00038	20.3	0.5	1	23	595	617	595	617	0.98
11	13	6.7e-07	3.7e-05	23.4	1.7	3	23	625	645	624	645	0.99
12	13	6.6e-08	3.7e-06	26.6	0.2	1	23	651	673	651	673	0.99
13	13	0.026	1.4	9.0	0.0	1	23	678	701	678	701	0.90

Sequence Information

Coding Sequence: atGGAAACTATAAATATATGGCACACTGCTGTGAACTCAAACCACATTTGTCGAATATGTTTACAAGAAAATGTTgaattgttttctatttttcaagAAACACATAAAAGTGGTGTAACTATAGCGCATATATTATCCGAGTGCTCGCGATTTCCTGTCATATCAACTGATAACATATTACCACAAAAAATTTGCTCCTTCTGCATGGAAAATGCTCGGGATGCTTATGACTTTAAACAACGAGTCGAAAAGgcttatatttcattaaaaggCTTAGAAAGTagtatttttctaaatgaagGAAAAATAGAACCCCCTAATACTGTTTTTAGTGAACGAAGGGATTTTGGTACACAAACTGATAAGCTGAGTTTACATCCATGTGAAATGtgcgaaatgaaatttttcgaTTTGATGGAACTGCGGCAGCATCGAAAGCAAGTTCATCACAACAGTAAATTACAATGTCGTATATGTGGTGTGCGCTTTGAACGCATTAGGCAATTGCGAAGTCATTTAGTTCACAAGCACCCCAGTGTGGGTATTGCATTAGATATACAATGCACAATATGTCGGAAGCGTTTTTCTCGAAGAGAACATTTAAATCGTCATATGCGTAATGTACACCATCAACCTGAGGAATCATCAagTCCTAGGGTTTCTCTAAAGGAACCGGAAATAGAGCTTTCAAGTCAGGTAGACAAAAATAATGAACCAAACGATTTCAAAGATATTGACACAAAAAGTTCGCCTATAGATACACAGAGGCCTGAAATTTTCCTGAAGTCCGAGAAAATGTTTAATGCCATCGACAATGATAACTTTGTCGGTCCATCTCACTTTTTTGAATGTGGGCAAAATCCATCTGATGACGTCGAAAGCGATATTAATATGGATACCAACCCCATATCAAGTGATGACGAAGCGCAGAATAGTGGAGAATTTTCGGAAGATATATTACCTCAATTGAAACTAGAACATGAAGCTGGTATCAAAGtaAAATGTGAACAAGACGGATCAGTGGATGATTTCGACATTATACGTATGTCTCCTGATTGGGACCAGAGCAGATCACAAGATGGCATTAAAATAGAAgctgaattttcaaattatggaGATATGCAGAATTTTAGTGTAGGGAAACGAAAGTTAAACAGAAGTGAAGAGACAGTAACTGATGTCGCAGAGCGGCGCCGTATTACAGAAGTAGTTGATGAATTTCTTGCCCAAAATTCTGCTGTGGACCAAACAGCAAATTCTGAAAATCGATGCACGAAGTGCCAGCGAACTTTTTCGCGTCATTGTCATCTACGACGTCATATGTTGACCCATGTCGAAGAAAAAGCGCACGCATGTAGCTATTGTCCAAAGCGATTCGCGCGTAGTGATcacttaaaaaaacatattataaacTTGCACCATACGAAAGAATTCAAATGTGATCAATGTAACAGCGCATTTGCACGTTCTGTAGATCTGGCGAAGCATATAGAAACCCGTCATGGTAACGATCCTCAGGCTCATAAGATTCACAATTGTGAATATTGtgggaaaaaatttacaagCCGAACTTACCTTCGAAAACATGTACTGATGCATACGGACCGCGTATTTGCTTGCAAATTTTGCGAGGACACTTTTAAGGAACGTAAAGCTTTACGTGAACATGAGAAGGGCCATCATAGTGATCGAAGAAATTTCCTTTGTTCAGTATGCGGTGAAAGTTTTGTACGCAATGATTATCTGCGTGTACATATGCGACGTCATAATGGCGAAAAACCATATAAATGTCAATATTGTGGAAAAGGTTTTCCACGTGCCACTGATGTTAAAATACATGAAAgATATCATACGGGTACCAAACCAAACTTATGTAATCTATGTGGCAAGGGTTTCCATCGTGCTTACAATCTGACCATTCATATGCGTACTCATACTGGAGAGCGGCCTTTCAAATGCGAGGAATGTGGCCGTGGATTTGCTCAAAGCAATGATTTAAAAGCACATATACGACGACATACAGGTGAACGTTTCAAATGCCCTGAATGTGATGCAGGGTTCCTACAAATGTATGCACTGCGGCAACATGCACTTGCAGCTCATGGTACATACATGGAGCCTGCAACGGGTCGTTTACAGAGATTCGCTACTAGTGAAGTGCCGGCACTAGTTGTAGGAGGAATTCCTACCAACAATTTGGTAGAACCAAGTGGTGATCATGTAAAAATTATGCAACATCAACCTCATCAGCAAATAGCGCAAGCAGAAAATGAAAGTAGTTCTCTTCTACAACTAGCTCAATCATCAGAGTAA
Protein Sequence: METINIWHTAVNSNHICRICLQENVELFSIFQETHKSGVTIAHILSECSRFPVISTDNILPQKICSFCMENARDAYDFKQRVEKAYISLKGLESSIFLNEGKIEPPNTVFSERRDFGTQTDKLSLHPCEMCEMKFFDLMELRQHRKQVHHNSKLQCRICGVRFERIRQLRSHLVHKHPSVGIALDIQCTICRKRFSRREHLNRHMRNVHHQPEESSSPRVSLKEPEIELSSQVDKNNEPNDFKDIDTKSSPIDTQRPEIFLKSEKMFNAIDNDNFVGPSHFFECGQNPSDDVESDINMDTNPISSDDEAQNSGEFSEDILPQLKLEHEAGIKVKCEQDGSVDDFDIIRMSPDWDQSRSQDGIKIEAEFSNYGDMQNFSVGKRKLNRSEETVTDVAERRRITEVVDEFLAQNSAVDQTANSENRCTKCQRTFSRHCHLRRHMLTHVEEKAHACSYCPKRFARSDHLKKHIINLHHTKEFKCDQCNSAFARSVDLAKHIETRHGNDPQAHKIHNCEYCGKKFTSRTYLRKHVLMHTDRVFACKFCEDTFKERKALREHEKGHHSDRRNFLCSVCGESFVRNDYLRVHMRRHNGEKPYKCQYCGKGFPRATDVKIHERYHTGTKPNLCNLCGKGFHRAYNLTIHMRTHTGERPFKCEECGRGFAQSNDLKAHIRRHTGERFKCPECDAGFLQMYALRQHALAAHGTYMEPATGRLQRFATSEVPALVVGGIPTNNLVEPSGDHVKIMQHQPHQQIAQAENESSSLLQLAQSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00190807;
90% Identity: iTF_00190807;
80% Identity: -