Basic Information

Insect: Bactrocera dorsalis
Gene Symbol: ush
Assembly: GCA_000789215.2
Location: NW:495317-536256[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.006 0.34 11.0 0.1 1 20 267 286 267 288 0.91

2 9 0.00027 0.015 15.2 0.8 1 23 349 371 349 371 0.98

3 9 0.049 2.8 8.1 0.8 2 20 402 420 402 422 0.92

4 9 0.047 2.7 8.2 2.9 2 21 848 867 847 868 0.93

5 9 0.0087 0.49 10.5 0.0 3 21 909 927 907 928 0.91

6 9 0.53 30 4.8 0.1 1 23 1004 1026 1004 1026 0.89

7 9 0.014 0.77 9.8 1.3 1 23 1032 1054 1032 1054 0.99

8 9 0.00092 0.052 13.5 0.7 1 23 1123 1146 1123 1146 0.96

9 9 0.34 19 5.4 0.4 2 20 1277 1295 1276 1297 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.006	0.34	11.0	0.1	1	20	267	286	267	288	0.91
2	9	0.00027	0.015	15.2	0.8	1	23	349	371	349	371	0.98
3	9	0.049	2.8	8.1	0.8	2	20	402	420	402	422	0.92
4	9	0.047	2.7	8.2	2.9	2	21	848	867	847	868	0.93
5	9	0.0087	0.49	10.5	0.0	3	21	909	927	907	928	0.91
6	9	0.53	30	4.8	0.1	1	23	1004	1026	1004	1026	0.89
7	9	0.014	0.77	9.8	1.3	1	23	1032	1054	1032	1054	0.99
8	9	0.00092	0.052	13.5	0.7	1	23	1123	1146	1123	1146	0.96
9	9	0.34	19	5.4	0.4	2	20	1277	1295	1276	1297	0.91

Sequence Information

Coding Sequence: ATGTTGGTATTGCCATGGAAACTATTCTTAATCGATATAAACGTAAAACAGCCAGttCAATTGGtaaaaatctcttttttttGTGATTGTTCTGAAACAACAGACGAGATGACAGCCGATAGCAGAGATTCCAAAGATCTGAGTCCCGCTGACTTAACAGATGACCAACAGCATTTAGAGCGTGAAGATCATCGGCTTGAAGAGACTGATATTGAAATGGAAGAAGATACAGATACAAGAGAGGACGACAATCGAATACTTGCTATAAATCCACATCGAATATCGCCGAATAGAAGAGAGGAAAGTGCACCGAGTCGTCCACCTAGTGTAGCCATATCAAATGGTTCAAATTCCCTAGACGCATTTCACAACGCCAACGAGCATATTGTACACAAAATCGAACTAAATGAAATTAGTATCGAATCAACTTCAGTAAATTCAAATGACGTACGTCCTGCCAGCAGCAGCCCACATAAGGAAGAACTGGCCGGCAACGAGACACCACCGATGTCTTCACCAACAAGCGTACTGCCAAAGTTGCGCTTAAATGCACTTTTGGCTTCCGATCCGGCCTTGAAACCGGATGCAAAAGATCTAAAAGTCTTACACGAAGAGACGCAAACGAAAAATCGACTCGCACAGCTGCCACCGCCACCGGCGCTCACCAAGCAGGAAGATATGGACACTTTAATGAGTGCGCCAGTAGTTAATGTCGTGGAACCGGTGTTGAAAACGCCGTCAGTTGGCGCCTCATCATCACCAGCTGCCACAGCGGATATCCCACCACGCCTGAAATTGTACATGTGCTTGCCCTGTGGCATACACTTCAGCTCACCCTCAACATTGGAAGCGCATCAGGCCTACTATTGCTCGCATCGTAATAAGGATATGGAGTCTGACGGAGCTTCGCTGTCCACAGTTATTACCGAAAAAACTGGCACATTGAATGCTAACACGCCCAACGCTTCTAGTGGTACCATCAATATCGGCGCTGGCAATAACGGTAGCGAACACGTCGCCAAAGTCATCAAGACGGGGAAACAATATGCATGCACACAATGCTCTTACAGCGCGGACAAGAAGGTCTCCCTCAATCGGCACATGCGCATGCATCAAACGTCGCCCGCGCATAGTAGCAGCGCGCCACCATCAAACGGCGCCGCCGCATTAGATGAGGGTGGTTCTAGTCAACAAACGGACCGTTACTGCAGCGATTGTGATATTAGATTCAATAATGTAAAGACGTATCGCGCACACAAGTTGCATTACTGCAGTTCACGCCGCAATGAGGGACAACTAACACCCAAGCTGGAAGTAAGCACCGCTAATGTAATTAAACCCCCGGTAGGCGCGGCTGCCATCAGTCCTCAGACGCGCACAAAGACGCCGACGCCAGCTATGGTGGCCGCCGCCGCTgcggcagctgctgctgcagccGCGTCGTTGCAAGCATCACCGCCACAACCATTTCTGGCTTTACCCACAAATCCAATATTGATAATTCCCTGCTCGTTAATACGAGCGGCGAGCTGGATACCGGGGCCACTCTCATCAGCATCGGCGTCTATTTCAAACCCTGATACCACCTGCTATATGTTGGACAACGGTAACTTGAAACCATTAGCCACAGCTTTGAATATGGGTGGGTTAAATGCCAATACTGCGGCGAATAATAATAACGTAGCTGCAAGCGCAAATATTCCACAAATGCCGACGGTCGAAACACCGCCGGTTCGTCAACCTTCGCAACCTAATAACAGCGACGTTCTGCCTGTGGAGAAAAATGCTGGACGTAGTAGCGACCGCAGTGAGACCTCAACGCCAAAGCGAAAAGATGGTGCGCGTGAGTCTGCACCCTTGGACCTCTCACTACGCCGTTCCCCTCCCTCTTATGTCAGCCTGCAACGACAGCGAGTTCACTCGGCCTCCTCCTATGCAGATCACGATCAGCAACGTATGGATATGGAAACTCTACTGGAGGCAAGTAAGGAGAACTTGTCTATGGATGAAAGTGGCACAGTGACACCCGAACAGATTGTATGTGCGCCCTCATTACCAAACAGTCCATCGATGAGTCCATCGCCAAAACGACGTGCAATAAGTCCACGAAGTTCCGGTGCCGGTAGCACATCTTCAATGTCACCGCCAGTAAATGTTTCGACTGCCTCGCTGGTGGCAGCTGCCGCCGCCAGCAACATGCTTGATCTACCGCTGCGTTCAATGTTACCCGCCGATCTAGCGTTGAAACTCTCCGAAACCAATATTATGAATCCATTGTTAGCCAAACAAAACTTCGAACTTGCTTTAAAGCTCTCGGCGGCCGCTGCAGCTGCAGTAAACAACAGCTCACCAGCTAATGTGGGCAATGGTTCGACACACGCTGAGTTGGCTGCAGCGGCGGTTGCTGCTGCCACAGCAAAGTCTTCGCTACTCGGCATGCCGGTTTTGAGCAACCCTACCTCGACCGGTAATAGCGCTAACGTAGGTGGCGGACCCAACGCTGCTGTGCAACCACAAATTTATGTCAAACAGGGTGTTTCCAAATGCAAGGAGTGCAACATTGTCTTCTGCAAGTACGAAAACTATCTGGCACACAAGCAACACTACTGTTCGGCACGCAATCAGGAGGTTGGCGAGGGCGAAGCCAAAGTGGCCAACACGTCCCCTCTTGCGGTCGGCGCCGCAAGTGTTGAAACGACACCGGTCGCCTATCAGCAACTAATTTGTGCTGCCTGCGGCATCAAATACACATCATTGGATAATTTGCGTGCTCATCAAAATTACTACTGCCCCAAGGGGGGCGGCACGGCAGGCGCAGCAGCCGTTGCAGCTGCAGCTGCGACAGCCGAAACTGGGCAGTTGCCTCTGACTAaggaaaaatgtggcaaatgcaAGACAATTCATGAAATTGGTTTGCCATGTCCACCGCCGCCCGCACTGCAACAAACGCAAAACAGCGCACAGCACATCGCGGCGACATCGACACTTTCAGCACtcaatcaaaatatgtataaatgtccCGTTTGTGATGTTGTTAGTCTGACAGCCACCGAAAGTCGAAAGCATATAGAGACGCATGGCACCGTGAAGGCATTCCGCTGTAGCATTTGCCGCTACAAAGGCAACACTTTACGTGGAATGCGCACTCATATCCGCATGCATTTCGACAAGAAAGCCACCGACCTCAATGAGGAGCACTACATGTCCTGCATCCTGGAAGATGAGGGCTTGGAAATCCCTAGCATAGCATCTACATTGAATCAGGAACAATTGGCGCAGCAAATAGCCGctatgcaacaacagcaacatcagtTGCAGCTGCAAgctcagcagcaacaacaacaacagcagcagcaacagcaaatattCAATTGCGATTTATGCAATTACTCATCCTCCTATAAGGGCAACGTGCTACGTCATATGAAACTGGTGCATCCTCACATCAACATTCACTCACCATCAATTTCACCTGAAGCCAATGACCTGGAAACTGCCGATGTAGCTGGTTTGAATGGGGAGAGTAGCAATTTCACCATAAAAAGCGAGCCAATGGATCAAGCGCCTAACGTCAGTCTAACAAATTCGGCACGATTGCTggacaataacaacacaacaataTTGGCTGCCACCTTGACAGCACCACCACCGCTGAACAGCCTCGGCGCCGAGCAAATGCCACATATTAAAACTGAACCCTTGGACATCGGAGGCGACAGCCAACCAGCAACCACACCACTACCAGCGCTCAGCTCACCCGCTATTGGACCACCGCCACCGCTCAATGCTGCCACCGACGACAATGCCACAGTAACggcaaatcaaaaatattgtcaaaCATGTGATATTTCCTTCAACTACATGAAGACCTATGTGGCACACAAGCAATACTATTGCAAGAATAAATTACGACGCCCGGAGGCCAGCGAAAGTCCCAGCCCCAACGCTGGCCTAATGCCAATGTCAGTGGCGTCGCCCAACTCGCTGTTACTGTTGCAGAAGAACAAGGAGAACCTGCAGCAGGAGGCAGCCATTTGA
Protein Sequence: MLVLPWKLFLIDINVKQPVQLVKISFFCDCSETTDEMTADSRDSKDLSPADLTDDQQHLEREDHRLEETDIEMEEDTDTREDDNRILAINPHRISPNRREESAPSRPPSVAISNGSNSLDAFHNANEHIVHKIELNEISIESTSVNSNDVRPASSSPHKEELAGNETPPMSSPTSVLPKLRLNALLASDPALKPDAKDLKVLHEETQTKNRLAQLPPPPALTKQEDMDTLMSAPVVNVVEPVLKTPSVGASSSPAATADIPPRLKLYMCLPCGIHFSSPSTLEAHQAYYCSHRNKDMESDGASLSTVITEKTGTLNANTPNASSGTINIGAGNNGSEHVAKVIKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAHSSSAPPSNGAAALDEGGSSQQTDRYCSDCDIRFNNVKTYRAHKLHYCSSRRNEGQLTPKLEVSTANVIKPPVGAAAISPQTRTKTPTPAMVAAAAAAAAAAAASLQASPPQPFLALPTNPILIIPCSLIRAASWIPGPLSSASASISNPDTTCYMLDNGNLKPLATALNMGGLNANTAANNNNVAASANIPQMPTVETPPVRQPSQPNNSDVLPVEKNAGRSSDRSETSTPKRKDGARESAPLDLSLRRSPPSYVSLQRQRVHSASSYADHDQQRMDMETLLEASKENLSMDESGTVTPEQIVCAPSLPNSPSMSPSPKRRAISPRSSGAGSTSSMSPPVNVSTASLVAAAAASNMLDLPLRSMLPADLALKLSETNIMNPLLAKQNFELALKLSAAAAAAVNNSSPANVGNGSTHAELAAAAVAAATAKSSLLGMPVLSNPTSTGNSANVGGGPNAAVQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEVGEGEAKVANTSPLAVGAASVETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGTAGAAAVAAAAATAETGQLPLTKEKCGKCKTIHEIGLPCPPPPALQQTQNSAQHIAATSTLSALNQNMYKCPVCDVVSLTATESRKHIETHGTVKAFRCSICRYKGNTLRGMRTHIRMHFDKKATDLNEEHYMSCILEDEGLEIPSIASTLNQEQLAQQIAAMQQQQHQLQLQAQQQQQQQQQQQQIFNCDLCNYSSSYKGNVLRHMKLVHPHINIHSPSISPEANDLETADVAGLNGESSNFTIKSEPMDQAPNVSLTNSARLLDNNNTTILAATLTAPPPLNSLGAEQMPHIKTEPLDIGGDSQPATTPLPALSSPAIGPPPPLNAATDDNATVTANQKYCQTCDISFNYMKTYVAHKQYYCKNKLRRPEASESPSPNAGLMPMSVASPNSLLLLQKNKENLQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00191670;
90% Identity: iTF_00191670;
80% Identity: -