Basic Information

Insect: Bactrocera dorsalis
Gene Symbol: Prdm1
Assembly: GCA_000789215.2
Location: NW:382793-399796[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.9e-05 0.0016 18.2 2.5 1 23 999 1021 999 1021 0.99

2 5 8.7e-06 0.00049 19.9 5.1 1 23 1027 1049 1027 1049 0.98

3 5 1.8e-06 0.0001 22.0 4.3 1 23 1055 1077 1055 1077 0.98

4 5 0.00061 0.034 14.1 2.4 1 23 1083 1105 1083 1105 0.97

5 5 0.0001 0.0058 16.5 0.1 1 22 1111 1132 1111 1132 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.9e-05	0.0016	18.2	2.5	1	23	999	1021	999	1021	0.99
2	5	8.7e-06	0.00049	19.9	5.1	1	23	1027	1049	1027	1049	0.98
3	5	1.8e-06	0.0001	22.0	4.3	1	23	1055	1077	1055	1077	0.98
4	5	0.00061	0.034	14.1	2.4	1	23	1083	1105	1083	1105	0.97
5	5	0.0001	0.0058	16.5	0.1	1	22	1111	1132	1111	1132	0.96

Sequence Information

Coding Sequence: atgaACGTGCAACTAGCGCAACAATCAGCAGCACACACCAGCAGAAAGCATTGCAACAACAGTAGTACTAGCATTAGTcgtattagcaacaacaacactaacaacaacatgaaCACCACCGTCAACACAcaatcacaacagcaacaacaacagccagccAACAATCGCACAATGTCCACAGCGACGACGTCGACGCCAACGCTGTCACATCGTACACAAAGTCCCGCTATAGTGCCGCCGCTGCCCACCGCCACGACGTCTACGGCCGCCTGCACAGCGACGACAGCGCCAATGCGCAGCGCGCGCAGTCCCTCACCCGACGGCACACAGGACTACGATGTGACGCGCATGCGCGAGGAGGACTTCGAACGGCTGGCCGTTTACATAGTGCCCGATGTGCAATGTGAGCGTGGCATAGCGAATCGGGCCGATCGCACGCTGCCACGCAGCCTAACACTGAAACCCTCGATGGTTTTCTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCACTGGTGTGATACCGCGCGGCACACGTTTTGGTCCTTTTGAAGGCGTTCCAACTCCGAACTATCCCAACGATACGAATAAGGCGCGCTATTTTTGGCGGATCTTCAAAGATGATTACTTCTACTATCTGGACGGCTCGGATCGTGCGCAAGCGAATTGGATGCGTTACGTCGCCTCCGCCTACAGTTTGTCGGTGATGAATTTGGTCGCCTGTCAACATCAGGAGAACATCTATTTCTACACCACACGTGACATAATGCCCAACGAAGAGTTGATGGTGTGGTATTGTAAGGATTTCGCACGACGGCTGGGCTACGATGTCGATCCGGAGCGCACGATTTTCGGAGCATGCAAACAGGCTGTGGACGATGATGAAGACGCGGAGGCCGATGCCGAAGATGAAGATGTCACGAGTAATGCCACAGCAACGAGCACATTGCTGCTGAGCCATAAAGCGAAATTGCGTTCGAATTCACCGTACTGCATGCCAGCGCCCGAGATACCACCCGAAGTGGCATACAATCACATCACCTATGTGATGGGGCTGCCGATACCACCATTACCGGCGGTGGTGGCGGGCAATGCGACCACCGTTAGTCGACGCTCCATTACGCCCAGTCCATCGCCACCCAGTTGCCGTGACGCCAACGCCAGTCATATGCCACAGCATTTGGCCGGACTGCCACACATACAGCATGCGCAGTCCACGCAGCGGCCGGGCGCACATCAACTTTCGACGCAACAACTACCCGCCACACACCtgcaacaccaccaccaacaaatgcaacagcaacaacaacatcagacGGTGTTGCATCTGAAGCAGGAGCCGGGCGCGTCGGTAATTGTGCGCGAACGCTCGCCGGCGAGCAGCGAGTGTGGCATGAAGGAGGCGAAGGATGTGGCGGGTTCGCCGTTGCCACACAAAGACACACACTACGAACATCAGCTGACGCCGAATGATGGTAGCGTGCGTTCGGTGCGCTCTGATGAGGGCTATCATAGCAACGAATATCACGAGGATGGACTGACGCCACCCGAGGACTCGAGCGATAGCGAGAGTGAGCACAACTATGTATTGGACTGTTCGAAGAAAGCCATTGCGCCAAAAGAGACGGTCATCACGCATCCGCAGAAAGCGGCCGTGGCTGCAGCTGTGGCCGCGGCAGCCGCTGCGGCgaacagtaacagcaacaacaatgcgactGTTAACAGCAACTGTGCCACAGCCACGCAAGTAACACCCGCAGTGGTCTCGTCCGCTGCCGGCGCGATGGATTGCGTTGGTGGTGGAGATAAGAATGAGTATCGCAAGTTCAAGGTGAAAATGCCGCTGAAGTATGAATTCAAGAATAGCAAATGCGCCATTAAGACTGAGGCCATGTGCCAcctaaacaatacaaataatagCAAACAGAATACAAGTGACGAACTGCCCACAGTTGGTGCCACATCCAGCGAAGATGATTTGTTGGCGGCCAATGAAGCCACACCCGCTTGCACATCCTCAACACAGCTGGACGATGAAGCGATGGATGTGGATCATATGCCTGGTTCAacgacgcaacaacaacacgcttcGAGCACCGTCATCATGGTGGATCGTAGCCTTAATAATAGTAACGGTCATGCGACGCGTACCATTGTGCCACTGAACAAGGCATACTATGAAGCTGAGACCAGCACACCGCCACCACTACCACCCACAGCCACACAATCTGCATCGGCGGCTGGTGTGGCCTACATGCGCTTCACGCCACCCTCCTCCAGCATACTCGAAACCATATTGACGGGTCAGCACCGATTGGAGGCCGCAGCTGCTGCGGCGGCAGCTTGCCGTCAAGCCAACGCGGCCACACCGCCACCTTCATCACCCACAGAGATGGCTTATTCCTATAAGAAATCGCACCGTTATGGCAATGCAGTAAGTCCGGACTCGAGCTCCAACTTAGCACAGGCACCCGATATGCATGCAGCAGCGCTGCACGATACCGAAATGCTAATTGCATCGTCCCGTGGCAGTATGAAGGACGACTGTTCGCCACCGCCAGCACCGGGCCATGATGTGAAATTCTCGCCAGCGCATGTTGCACACAGCGCCTTCGTCTCGGATGGCCATCAAACGCCGCCATACTCCGCGTACTCACCTTATTCCAGCGGCAGCGTGAATGGTGGCGCGCCAGGTGGCGGTCATCCACTCTCACACATGCCCACATCCACCTTCCACTCGCCGCCGCATAGCTCGCACTCACCCTTCGAACGCCAATGGGATGGGTCCAGCGGCTCCACACCCAATCTGCACCTGTTGCAGTCCAGCTCACAGATGCTAATGAAACCGTTGCGCATTTCACCGCCCAGCAGCCTGAGCCCCGATGGCAATTCGTGTCCGCGCAGCGGCAGTCCACTCAGCCCGAACTCATTGGCGGCGCGCGGCTACCGTTCACTGCCATATCCATTGAAGAAGAAAGACGGCAAAATGCACTATGAGTGCAATGTGTGTTGTAAGACCTTCGGCCAGTTGAGCAATCTCAAAGTGCATCTGCGCACACATTCCGGCGAGCGGCCATTCAAATGCAATGTCTGCACGAAGAGTTTCACACAGCTGGCGCATTTGCAGAAGCATCATTTGGTGCATACCGGTGAAAAGCCACATCAGTGCGACATCTGCAAAAAGCGTTTCTCGTCGACATCGAACTTGAAGACCCACCTGCGTTTGCACAGCGGTCAAAAGCCGTACGCTTGCGATCTGTGCCCACAGAAGTTCACACAGTTCGTGCATCTGAAGCTCCACAAGCGTCTGCACACCAACGATCGGCCCTACGTCTGCCAGGGATGCGACAAGAAATACATAAGCGCATCCGGTCTACGCACTCACTGGAAGACAACGAGCTGTAAACCCAACGATCTGGAGGAGGAGCTGGCCATGGCCGCGGCGGCAACCTCAGAGTGTTTAGATAAATACGTGCCTGAGCCCGACTCGCGCGAAGCCTTCGaacatatgcaacaacaaatgcatccACATCTGCGTCACCTGCCACCCAGCAGCAACGGCGCAGGCAGCCACGCCAATGCTGCCGTTCGTCCAACATCGCCACGTCTCCTTTCCATCAATCCGCTACATCAACAACAaacccaacaacagcaaacgcaTGCGCATCTACAGCAACAGCATGCCGCCATGTTGCAACAGCACGCGGCCGCGGCGGCTGCCCAACATTTGTCCGGCGCAACGACGAATCCCAACGCCGCCGCAAGCATGTTGCTTGGCTCCaccgcgcaacaacaacaacaccaccacagcctacaacagcagcagcaacaacatctgcagcaacagcaacaacagctgctgcagcagcaacagcagcaagcaCATCCACTAAAGGCCAGCCTCAAACAGCAAATGCATTTACTACCACCGGGCGCCGCCAACGGCAGTGGCGCTGGCGCGGTCAACTCCCCACCCGGTGTTGCGCCCAACGATGCCTACATGAGCGTCTCGCACGCGcatgctgcagcagcagcagcccaTGCCGCGGCCGCagctgcagcggcggcggctCATGCAGCGGCAGCGCATCAGCATGCGCAGAATCAGGAGTCGCGTCCCTCGGTGATCGAATCCAGTCAGCCGATGATCATCGAGTGCACGTAG
Protein Sequence: MNVQLAQQSAAHTSRKHCNNSSTSISRISNNNTNNNMNTTVNTQSQQQQQQPANNRTMSTATTSTPTLSHRTQSPAIVPPLPTATTSTAACTATTAPMRSARSPSPDGTQDYDVTRMREEDFERLAVYIVPDVQCERGIANRADRTLPRSLTLKPSMVFSTPNVKTEGVWSTGVIPRGTRFGPFEGVPTPNYPNDTNKARYFWRIFKDDYFYYLDGSDRAQANWMRYVASAYSLSVMNLVACQHQENIYFYTTRDIMPNEELMVWYCKDFARRLGYDVDPERTIFGACKQAVDDDEDAEADAEDEDVTSNATATSTLLLSHKAKLRSNSPYCMPAPEIPPEVAYNHITYVMGLPIPPLPAVVAGNATTVSRRSITPSPSPPSCRDANASHMPQHLAGLPHIQHAQSTQRPGAHQLSTQQLPATHLQHHHQQMQQQQQHQTVLHLKQEPGASVIVRERSPASSECGMKEAKDVAGSPLPHKDTHYEHQLTPNDGSVRSVRSDEGYHSNEYHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVITHPQKAAVAAAVAAAAAAANSNSNNNATVNSNCATATQVTPAVVSSAAGAMDCVGGGDKNEYRKFKVKMPLKYEFKNSKCAIKTEAMCHLNNTNNSKQNTSDELPTVGATSSEDDLLAANEATPACTSSTQLDDEAMDVDHMPGSTTQQQHASSTVIMVDRSLNNSNGHATRTIVPLNKAYYEAETSTPPPLPPTATQSASAAGVAYMRFTPPSSSILETILTGQHRLEAAAAAAAACRQANAATPPPSSPTEMAYSYKKSHRYGNAVSPDSSSNLAQAPDMHAAALHDTEMLIASSRGSMKDDCSPPPAPGHDVKFSPAHVAHSAFVSDGHQTPPYSAYSPYSSGSVNGGAPGGGHPLSHMPTSTFHSPPHSSHSPFERQWDGSSGSTPNLHLLQSSSQMLMKPLRISPPSSLSPDGNSCPRSGSPLSPNSLAARGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNDLEEELAMAAAATSECLDKYVPEPDSREAFEHMQQQMHPHLRHLPPSSNGAGSHANAAVRPTSPRLLSINPLHQQQTQQQQTHAHLQQQHAAMLQQHAAAAAAQHLSGATTNPNAAASMLLGSTAQQQQHHHSLQQQQQQHLQQQQQQLLQQQQQQAHPLKASLKQQMHLLPPGAANGSGAGAVNSPPGVAPNDAYMSVSHAHAAAAAAHAAAAAAAAAAHAAAAHQHAQNQESRPSVIESSQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045810;
90% Identity: iTF_00191622;
80% Identity: -