Bdor005279.1
Basic Information
- Insect
- Bactrocera dorsalis
- Gene Symbol
- -
- Assembly
- GCA_000789215.2
- Location
- NW:841751-845557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4e-05 0.00077 19.3 1.3 3 23 230 250 229 250 0.97 2 13 9.7e-05 0.0055 16.6 1.3 1 23 256 278 256 278 0.98 3 13 0.0029 0.16 12.0 4.0 1 23 284 306 284 306 0.96 4 13 0.092 5.2 7.2 1.3 2 23 313 335 312 336 0.95 5 13 0.0073 0.41 10.7 2.4 1 23 345 368 345 368 0.96 6 13 0.00033 0.019 14.9 0.1 3 23 376 396 374 396 0.95 7 13 0.91 51 4.1 5.3 1 23 462 484 462 484 0.95 8 13 2e-05 0.0011 18.7 0.9 2 23 737 758 736 758 0.97 9 13 0.0029 0.16 12.0 0.7 1 23 770 793 770 793 0.96 10 13 2e-05 0.0011 18.8 0.9 1 23 798 821 798 821 0.97 11 13 0.0019 0.11 12.5 0.9 1 23 826 848 826 848 0.96 12 13 0.0014 0.077 13.0 5.9 1 23 854 876 854 876 0.99 13 13 0.00021 0.012 15.5 1.4 2 23 910 932 909 932 0.95
Sequence Information
- Coding Sequence
- atgcttaaaatcgTTAATGCTGCAAATAAATTCGGTTATAATCAGTCAAAGTCTAAATGTGCCGAAATTCATTATCAATCTTcaacattttcgattttatgcattttctgtGGTTTGAAAACGCTTGCGTTTTCTGAATTCtgtgaacattttaaaaaacattgtGAAGAATTCACGAACGAATTGTCTGACACAGAAGTATTGACTATTAATATTGAAAGTAACAGTACGACAAATTCCAATTGCAAGCACGATCCATTGAAATTAGAAGCCGCAGATATCACGAATGATTCGGATGTGGGATTAAGCATTCTTGGAACAGCCAATCAAggagcaataaataaaattgaaaataaaaacggtGAAAGTCTTACTGTTAGTCAGTTGTTTCGGCACAAACCAGTATTTGTGGGACTACAATATGATAAGAATattgtgaaaaacaaaataaaagaggaAGATACCGGCgTGAACACGAAATCTACTAAAACAAATTTGGTACATTGTTCAACTTATAAAAGGACTTCAGATCATGAACACCCCAGTGAAAGCGAAAGTGATCATACAGATTTAAACCACACAGAAAGTAAGGTAAATGAAAGTATTGATTGGACGAAATCCTACGaaccaaatttgttaaaaaatagtgGCAAACGTCCTTACAAAGCACGTAATACGCcaaatatgtgcacatattgTGGTAAAACATTTCGACGCCGTCTGCAGCTGGATAcgcatttaaatatacacaccGGTTCCAAACCACACCAATGTGAGATTTGCGGACGTCAATTTCGTGCAGTGACAACATTAGCTCGCCATCGCAATACCCACCAAAATCGCTCCGATTTCTGCTGTAAGTTTTGTTCGAAGTCTTTTTCTCGGCGCGCAGCAATGTTAAGCCACGAATTGCGGCACACACAAGAGCGACGCATACCATGCAACGAGTGTGAAAAGCTATTCTACACGGTTAATCAAATGGATACACATAAACGAAAAGTTCATCATATGACGGATGATGCATCCTTACCATTTCAATGTAATTTGTGCACAAATCGCTATCGCAGTGCCTCTATGTTAAGTACacataagttaaaaaaacactataaaacagcaaaaatattttgtgagcAATGTGACAAAAAGTTCATTGATGAAGCTCAATTAGAGGTTCATAAAACTATACACAAACCAACTCTTAAACATAATTCTTATGCATTATTGGTAACTATTTATTCAAGAATGAATTCGTCTGATAATCAGAACATAAATGACTTTTCTGTTCTTGAAGACTCTATTGTTAGTGATCCAACCACAAATCTAATCGAGGACGATATTCAGTGTGGGCTTATATTTTTCAGTGAGGCAACAAGAGTTCTGAAGTTTTGTTGCACTTATTGTGAAAAAGTtagcgaaaatataaattacttttgtcAGCATTTAAGTGAACATATAAACGATGATGAAAAAGAAATCTTGCCCCAAGAATTCAATGCTGGCATTATGCCTGAAGGTTCTATGGACGACGACGCAACAGCAACACGCGAGGCGGTAGTTTACGGAGCTGTATCAAATCAATCTCTACTACCATGCGATTTAGCTGGTTTTGATGAATCGAAAATGGTTGTAGAGGAATTGGATGAAGCGGAGGAAATAGCTGCAGAAGTGGAAGCTGAAATGCGTCAAGAATTAGAAGGCGtccaaatgtatgcaaatgatGAAAATAGTTGCCCAGAAGACTTCTTTGGTTACGTACAAACTAatgaaaatcatttgaaaacGGAAACTCAAAAAGAGGTACAGAAGTCCACCACCGACTTTAGAAAAACTTCAAAAGGACAcgataaaataatacaatttaaaaattctaaaaagaaaaaacgggTAACTACAGTAAAGGtgattgctttgaaaaatagaGTAGCGGAGCTTTATGAACGTATTAAGCTTGAAGAAGAGCGCCGGTCTCGAATTAATACCACAAATCCTGAATCTTGCGATGTACCTATGGATGAGGAAAATAATGTTGCCGAAGAAAATGAAACGTCCGTTGAGGAAAGTACAGAACCTGTCCGCCATATAATAGGCGAAACGGTTATTACTCTGCTGCCACAAACTGAATCGAAAGTTGAACTATCCAAATTCAGCGGCAATGTAGTGCCAATGATAAATAACATAAACAGACAAGACAACACCGATGATAAGACAACTTGTCCTGCTTGTGGAAGGAAATTCAGGAGTGCCTTTAGCCTTACAATTCATAAGCGGACACACTATCTCGAATCGGACAGTAATGTAAAATTGGCTCACAAATGCTCGGACTGCGATcagttgtttaataaaattccgGATTTAAAAGATCATATTCAACAAGTTCATTATCCTGATggatttatatgcaaaatatgcaataaaaaacttaCAAGTCTCACCCTATTGGAGACCCACATGAGAAAAGTGCATCTTTCGAGACCATTTAATTGTGAAATTTGTCGAAAGAACTTCGACACCCGCGATCGGTTTGAGGAGCATGTTAAAGCGCATGTATCCGGTCAACCATACCGATGTCACATATGTGGACGAAAATACAGTACAGAATGCATACTTAAGCAACATCTGCGTAGACACAAGGAGCAAATTCCTCAATGTTGCGTGGTTTGCGGAAAGATGACATTGCGTATAACACAGCATATGAAAATTCATGCTCCGAGACCGAAAAGGATACTAAGTTGCAAGGCATGTGGcaaagttttcaatttcagttcAGGTTTGAGTCACCATTACAAAGTAATGCATAAACTACAGAAATCTCCTACGAAACTAAATCAAGAAAACGAAGCTCAAATACCAACTGATCAAGAGGATGTCAAAACAGGATTAGTGGAATTGAAAGAAGAAGTAGAAATTACAGAAAACTCTGAAGAAATCATACAAAAAGAGGAAGAGGCAAAACGAGTTATCGTCGAACTTATACAAAATGCGACATATACTTCATTTTTTCcggaaaattttaatagttcgATGGATTCTGGGCCACCAATAGCACGTGAGGAAACGATTTCGGCTGTAAATAGCATTGTAAATGAAGAAAACTCATGA
- Protein Sequence
- MLKIVNAANKFGYNQSKSKCAEIHYQSSTFSILCIFCGLKTLAFSEFCEHFKKHCEEFTNELSDTEVLTINIESNSTTNSNCKHDPLKLEAADITNDSDVGLSILGTANQGAINKIENKNGESLTVSQLFRHKPVFVGLQYDKNIVKNKIKEEDTGVNTKSTKTNLVHCSTYKRTSDHEHPSESESDHTDLNHTESKVNESIDWTKSYEPNLLKNSGKRPYKARNTPNMCTYCGKTFRRRLQLDTHLNIHTGSKPHQCEICGRQFRAVTTLARHRNTHQNRSDFCCKFCSKSFSRRAAMLSHELRHTQERRIPCNECEKLFYTVNQMDTHKRKVHHMTDDASLPFQCNLCTNRYRSASMLSTHKLKKHYKTAKIFCEQCDKKFIDEAQLEVHKTIHKPTLKHNSYALLVTIYSRMNSSDNQNINDFSVLEDSIVSDPTTNLIEDDIQCGLIFFSEATRVLKFCCTYCEKVSENINYFCQHLSEHINDDEKEILPQEFNAGIMPEGSMDDDATATREAVVYGAVSNQSLLPCDLAGFDESKMVVEELDEAEEIAAEVEAEMRQELEGVQMYANDENSCPEDFFGYVQTNENHLKTETQKEVQKSTTDFRKTSKGHDKIIQFKNSKKKKRVTTVKVIALKNRVAELYERIKLEEERRSRINTTNPESCDVPMDEENNVAEENETSVEESTEPVRHIIGETVITLLPQTESKVELSKFSGNVVPMINNINRQDNTDDKTTCPACGRKFRSAFSLTIHKRTHYLESDSNVKLAHKCSDCDQLFNKIPDLKDHIQQVHYPDGFICKICNKKLTSLTLLETHMRKVHLSRPFNCEICRKNFDTRDRFEEHVKAHVSGQPYRCHICGRKYSTECILKQHLRRHKEQIPQCCVVCGKMTLRITQHMKIHAPRPKRILSCKACGKVFNFSSGLSHHYKVMHKLQKSPTKLNQENEAQIPTDQEDVKTGLVELKEEVEITENSEEIIQKEEEAKRVIVELIQNATYTSFFPENFNSSMDSGPPIAREETISAVNSIVNEENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -