Bdor004003.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bactrocera dorsalis
Gene Symbol
Arp8
Assembly
GCA_000789215.2
Location
NW:340395-357628[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2.7 1.6e+02 2.6 3.9 2 23 251 273 250 273 0.94
2 17 4.1 2.3e+02 2.1 0.7 6 23 282 299 274 299 0.95
3 17 0.0014 0.077 13.0 2.8 1 23 305 328 305 328 0.97
4 17 0.0039 0.22 11.5 1.1 1 23 336 359 336 359 0.96
5 17 0.36 20 5.4 0.2 1 23 364 387 364 387 0.86
6 17 8e-05 0.0045 16.9 0.1 2 23 394 416 393 416 0.94
7 17 0.15 8.5 6.6 1.8 2 23 425 446 424 446 0.96
8 17 0.08 4.5 7.4 5.9 1 23 455 477 455 478 0.96
9 17 0.00013 0.0074 16.2 0.3 1 23 483 505 483 505 0.97
10 17 0.0035 0.2 11.7 7.2 1 23 511 534 511 534 0.94
11 17 0.037 2.1 8.5 0.1 1 23 1538 1560 1538 1560 0.99
12 17 0.012 0.67 10.0 0.1 1 23 1566 1588 1566 1588 0.97
13 17 0.01 0.58 10.2 0.4 3 23 1599 1619 1597 1619 0.98
14 17 5.9e-06 0.00033 20.4 0.3 1 23 1659 1681 1659 1681 0.96
15 17 0.032 1.8 8.7 1.8 1 23 1689 1713 1689 1713 0.97
16 17 2.5e-07 1.4e-05 24.7 1.8 1 23 1719 1741 1719 1741 0.98
17 17 0.00027 0.015 15.2 0.1 1 23 1747 1769 1747 1769 0.98

Sequence Information

Coding Sequence
ATGATTTGCCGACTGTGTTTAATTGagtcaaatgaaatattaaaaatttataacgaaACCGGAGAAATGATAGATAATGACATATTGAAAGTAGTGGCCAAACATTTCCAAATTGAGATTCGATACGATGATGCAGTAtctaatataatatgtttggtATGTTGGGATTATCTATCGAAGTTCCATAAATATTGGTTGAGCATTGAAGAGAAGCAGATAACCTTGAACAACCAATTGCATTTTACGGAAATAAAACGTGATATCGAAGATGTGGAGACAGAGGGTTTTGCTTATGAAGATAAGAattcaactaatgaaaaaataGAGACTAGTTTGTGTGAACCTGAAATAGATATGTTAATTCAAAATACTGACACATTTGGAGTTGAAACCGAATTTGTTGCTGCTAAAACGGAAGAAGAAGATGAGGCGACTGTGGATTGTGGCGATGTTTTTGCCACCACAACAAATTCCCTTGACATTCTTTCaagagaaaatgaaattgaaactgaGGATACTGCACCAAATAGTCAACAAAAACGCAAATACACTAAAAGGAATAAAAAGCTGGAGAatacaattttagaaaaagGAAAGAGAAAAAGGGGTCGACCTAGGTTAAGAAATAGCAATTCAAAAGCGAGTTCAAGTCccaccaaagaaaaaaaaatcgaaagttcCCAAAACtatgaagaaaaattgaaagCTATCCAGGAAGCCGATAAGTTTTTAGCAGAAAACACACAGTTGAACTGTTGTATTTGTACGGAACAATTGAAAGATTTTAAGGAACTTAAAACTCATTTTCGACAAAAACACCAATGTACCGGATATGTGATTTGTTGTAATCTACGTTTTAATAAACGTACTTTATATGTGGACCATATTCAGTTGCATAAGAACCCAGACTTCTTCAAATGCAGCATTTGTAATAAACAACTAATAAGTCGCAAAAATTACGCAAATCATATGCACTCGTTGCACCCGGCTGAAGAAAATCTGCAATTTGCTTGTAAACTTTGTCCGAAAAAATTCTCTAAGCAATATATTCTAGATAGTCACATAAAAATGCGTCACATGCCCAAGGACCATATTTGTAATCTCTGTGAAAAGGCATTTGCAAGTATTTGGATTTTGAAGCAACACGAAAAAGCTGTTCATCGGAATGAATTTGAATCAGTTTGTGAAATATGTGGAAAGCGTTTGAGGAATGCCGCAAACTTACAATATCATATGGATAACATACACAATACCGAACCACGTCCGGAAGTTGAATGTACGCTTTGCCATAAGTGGCTAAAAAGTGACCGTAGTTTGCGGAAGCATATGATTTCACATCGTGATGAAGCATCAGGTACAGTGTTTAAATGTCCTCACTGTGATGTTGAGAAAAAATCGAGGCATTCGCTTGCGTCACATATCCGCTATCATCACTCCAACCGAATCTTCTCCTGCACAATGTGTACCAAAGAATTTAAAACTCCAATCGCACTGAAgGAACATGAAGCCACACATACTGGTGTCGATTTGTATACTTGCCCCTTCTGCCCTAAGACGTTCAGATCCCACGCCAATATGCATAAACATAAATTGCATAGTCACTCAGATGAATGGGTTCGCAAATATGCGCAACCTAATGAATTCACCCAAAGTCTTTTAAACCAAACGCGTAACACCGAGACATTAGCGTACCGAAAGCGTGAATCGACATCTGCTCAAGAACATAAAGATGAGTTACTGCCACACGTGCAAGGTTCAGCCGAAACTCTCACAGAATTTGAGGAACAAAGGCTACAAGTTTCCCATTCTATACAATCATATGCACCACTTCAAGAAACTTACGAACGCAGTGCTAAACGACTGCGAGTTGCTACGCCACCGCAACAAATCGCTACTTTCAACAGGCGAAGTGTTCCCGAAGACCTTCCAATAATAGACGACAACAACTGCagcgaaaaaagtgaaaatgtagtTGGACGTGAAAGGCTATTTGACAAAGATATTTTAGCGCTAAACGAAAAAGATGCAATTGCTTATAACGTCCATTTTCCAATAAGACGCGGTGAACTAAATTTGCATAAAGGTGTGGGTGGTTCTATGGCAGCAATCATATCTAGCATGGAAATAATTTGGCTGTATGCATTAAAaagtcatttaaatattatggcAGATGCATTACCACATTATAGTGCTGTTTTGGTTGTATCGGACGTCTATAATCGTAGTCATCTACGAGAATTGACAACATTATTATTACAGCGGTTGAGATTTCGttcatgttttttattacaAGATCATGTTGCGTCTACTTTTGGGGCTGGACTAAGTTATGCTTGTGTTGTTGATATTGGGGatcaaaaatgttcaatatcTTGTGTGGAGGATGGTATTAGTCACCCAGAAACACGTGTACGACTTTCTTATGGTGGTGGCGATGTGACACAAGTGTTTTTAAACCTTCTACGCAAGTGCAGCTTTCCTTACAAAGAATGTGATGTAAAAAAAGGTTATGCAGATGCAGCATTAATAATGCATTTGAAAGAACGTTTTTGTCATCTTACCTTAGATGTTTGTGGAGCGCAAGAGCGTTGTTTTGAGGTAAAGAAAGGAAATAAACGATTACGATACACTCTTCAAATAGGTGACGAATGTGTTGTAGCGCCACTATGCCTGTTTCATACAGAACTACTTAATATTACTGGCAAAACGAAGCAAGCTAAAGTTCAACTGCGAAGTAGTCAACAACCGGATCCAGAAGATTGTTTTGATGCCGAATACATAAGGGAAACAGGACGTCGAAATGGAGTACGAGATCAATTACTTGAAGGGACGATACCAGTAACAGGCGAAGTGACTGAAGATGATTTAGTGGTAGACGATGTGGTTGAACGTGACGCCAATAGTAAAACTAGTGATAAAGATGAACTTTTATATGTCGTAAACGGGCAGATTATGCCAATTGATCAAGCTATAGTTCGTAGTATTGAACGTTGTTCAACCGAAGAGATTAAGCGCAAAATGTATAGCTGTATATTGCTTGTGGGAGGCAGCACGAAATTTCCAGGTTTCTCAAAATGGCTGGAACAACGTGTTATGCTTCAATTAGCGGCCACGGCAACGTCATACTCTGCATTTGAAGTAAATGCATTCACCAAAGAAATGGACGCTGGTATGATAGCTTGGAAGGGTGCGGCTATAATGTCATGTTTGGAGAGTGCGCCTGAGCTGTGGATATATTCTAGTGAATGGGAGAAATATGaattactgtgGGAGCTAAAGATGAGTGTTTTACCATATCAACCAACAAGCGATGAGGATATCTTTCGCCTATGCACAAAAGAATGCGGGATCATCACAGCCACAGAGGATCAGCAATACTTTGCATTAGGCTGTATGTTTTGTCCGGCCAAATTTCTGTATTTCGACGCTTTTATTGGACATATGCAAACAGATCATGGACCACAAACAATGGGCCAAAAGGGACTGTTTGGTGATATGCTGGGaCTCGGTTATAATGGCTCCTATAGTGAAAATGACAGCGGTCATAGTGGCGTCGCCGCGGAAGATCTTACTGACACCGATCCCTCGCTTTTAGTACCACAAACAGTTATGATTAAAGAGGAAGTAGGAGATGACGCATTAGAAACACCAAAACATGATGACTCCATAATTACCGGATTATCAACAGAAAATGAATTAGCAGACACTGTGAATTCTATGTACCCAGTCAAACAGGAGCATTCAGAGCCGGAAGTTTCAATGGAAGGAGACGGTGAAAGCTATATGCCTGATAACTACGGAAATTATGAAGATTTCACTAATAATGGTGATGAAGATGATCACAATTATCAAGAAGATGATGAGAATAATTATGATGACTTAGTTGAACAATCGTTATTGGGTGGAAACCATGAAATGGAATCAGGTTTAACTATGCATATAAAAGACCGCAAAATGATTCAATTTCTTATCGACTCTTATCGGCGCAACACATTTCTTTGGGATCATCGACATCCACAATTTCGTGATCGTTCTAAAAGACAGCACTTTCTCGATTGGATTGTAATGGAATTTAAGCGGCGGTTTAATTTATCTTTGGCAAAGGATGCAGTTACCCGAAAGTGGGACAATTTAAGAACTGTATATAAAAGGGAATGCAATCGAATGTCTTTGGAAAATACCAACATCAGTACACTATGGTATTTTAAGgatttacattttcttaatcGGTTTTATGGTGGAAATCAAAAGATGACTGAGGCTGTCGTGAAGGAAACAGTATACCGACGTCGGTCCTCCGCACTTTGGAATGATGTCTCTACTATGAAACTTTTATCAATGGTCGAACAATATCcatgtttttataataagtaCAACATAGACTACCGTAGCAAAGAAAAACGAGGAGAAGCACTACAGAAAATGGCGGCAGAACTGCAAAAGATGATTGAGGTCAGCACCATACAAATATCGAAGCGTATTTCTCAATTGCGTTTTGATTActccaaacaaaaacaagaacgtTTGCTATGCGAGCAAAACAATAAAGTGTTTATGCCAACTTACAGTTACTACGATCAAATGCAGTTTATGGATGCGGATATTGCACCatttaaatgtgaattttgTCCTGTTATTGTGCAATCACCACGAGAACTAGATACACATCTCAATACGCATCAGCCAGAGGGTACTTACGCATGTAATATCTGTCCTGTTAGCTTTTTAGACGTTGATCAGTTGAACCAgcataaacaaatacacacacccacaagtAAGGAGGTAAAATACTGGTGCGACTTATGCACAGCTAGTTTTCGAACTAAGGAAGTGTACGATGAACATATGCGTCGACATAACGATGAACTCTTACTACCTTCATTAGCCAATATCCCGCATGCAGGCAATGACATGGGTATGgcggaaaatgaaaattcactATTGCACATGGATAATTCAGAGTACGATGACGGCTATTCGTGTGACATATGTGGCAAATCTTTTACCAATATGGTGTATCTCAATGCGCATCGTGCACAGCATACCAGTCCCAGTGAGCGTCCATTCCGTTGTGATTACTCTCATTGCGGTCGTTTATTTCCCACGCGACAATCTATGCTAGAACATGCTAGGCAGCACTATAGCGATGAAGAATTTAAATGCGACATATGTGGCAAAACCTTCAAATCACTTAAAAATCTGCAGaatcacaaacaaatacacGACGCTATCAAACGATATGTGTGTAAGATTTGTGGCTCAGCGTTTGCGCAAGCAGCCGGCTTATATTTGCACAAGCGTCGACATAATCGGCCAAACTCACGTATACATCAAGGTTACTGA
Protein Sequence
MICRLCLIESNEILKIYNETGEMIDNDILKVVAKHFQIEIRYDDAVSNIICLVCWDYLSKFHKYWLSIEEKQITLNNQLHFTEIKRDIEDVETEGFAYEDKNSTNEKIETSLCEPEIDMLIQNTDTFGVETEFVAAKTEEEDEATVDCGDVFATTTNSLDILSRENEIETEDTAPNSQQKRKYTKRNKKLENTILEKGKRKRGRPRLRNSNSKASSSPTKEKKIESSQNYEEKLKAIQEADKFLAENTQLNCCICTEQLKDFKELKTHFRQKHQCTGYVICCNLRFNKRTLYVDHIQLHKNPDFFKCSICNKQLISRKNYANHMHSLHPAEENLQFACKLCPKKFSKQYILDSHIKMRHMPKDHICNLCEKAFASIWILKQHEKAVHRNEFESVCEICGKRLRNAANLQYHMDNIHNTEPRPEVECTLCHKWLKSDRSLRKHMISHRDEASGTVFKCPHCDVEKKSRHSLASHIRYHHSNRIFSCTMCTKEFKTPIALKEHEATHTGVDLYTCPFCPKTFRSHANMHKHKLHSHSDEWVRKYAQPNEFTQSLLNQTRNTETLAYRKRESTSAQEHKDELLPHVQGSAETLTEFEEQRLQVSHSIQSYAPLQETYERSAKRLRVATPPQQIATFNRRSVPEDLPIIDDNNCSEKSENVVGRERLFDKDILALNEKDAIAYNVHFPIRRGELNLHKGVGGSMAAIISSMEIIWLYALKSHLNIMADALPHYSAVLVVSDVYNRSHLRELTTLLLQRLRFRSCFLLQDHVASTFGAGLSYACVVDIGDQKCSISCVEDGISHPETRVRLSYGGGDVTQVFLNLLRKCSFPYKECDVKKGYADAALIMHLKERFCHLTLDVCGAQERCFEVKKGNKRLRYTLQIGDECVVAPLCLFHTELLNITGKTKQAKVQLRSSQQPDPEDCFDAEYIRETGRRNGVRDQLLEGTIPVTGEVTEDDLVVDDVVERDANSKTSDKDELLYVVNGQIMPIDQAIVRSIERCSTEEIKRKMYSCILLVGGSTKFPGFSKWLEQRVMLQLAATATSYSAFEVNAFTKEMDAGMIAWKGAAIMSCLESAPELWIYSSEWEKYELLWELKMSVLPYQPTSDEDIFRLCTKECGIITATEDQQYFALGCMFCPAKFLYFDAFIGHMQTDHGPQTMGQKGLFGDMLGLGYNGSYSENDSGHSGVAAEDLTDTDPSLLVPQTVMIKEEVGDDALETPKHDDSIITGLSTENELADTVNSMYPVKQEHSEPEVSMEGDGESYMPDNYGNYEDFTNNGDEDDHNYQEDDENNYDDLVEQSLLGGNHEMESGLTMHIKDRKMIQFLIDSYRRNTFLWDHRHPQFRDRSKRQHFLDWIVMEFKRRFNLSLAKDAVTRKWDNLRTVYKRECNRMSLENTNISTLWYFKDLHFLNRFYGGNQKMTEAVVKETVYRRRSSALWNDVSTMKLLSMVEQYPCFYNKYNIDYRSKEKRGEALQKMAAELQKMIEVSTIQISKRISQLRFDYSKQKQERLLCEQNNKVFMPTYSYYDQMQFMDADIAPFKCEFCPVIVQSPRELDTHLNTHQPEGTYACNICPVSFLDVDQLNQHKQIHTPTSKEVKYWCDLCTASFRTKEVYDEHMRRHNDELLLPSLANIPHAGNDMGMAENENSLLHMDNSEYDDGYSCDICGKSFTNMVYLNAHRAQHTSPSERPFRCDYSHCGRLFPTRQSMLEHARQHYSDEEFKCDICGKTFKSLKNLQNHKQIHDAIKRYVCKICGSAFAQAAGLYLHKRRHNRPNSRIHQGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-