Bdor006022.1
Basic Information
- Insect
- Bactrocera dorsalis
- Gene Symbol
- -
- Assembly
- GCA_000789215.2
- Location
- NW:30071-58661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 1.1e+02 3.0 0.0 1 23 353 376 353 376 0.87 2 12 7.7e-07 4.4e-05 23.2 0.6 1 23 390 412 390 412 0.99 3 12 0.0039 0.22 11.6 3.3 1 23 419 441 419 441 0.98 4 12 3.8e-06 0.00022 21.0 2.0 1 23 447 469 447 469 0.99 5 12 0.0095 0.54 10.3 5.7 1 23 476 498 476 498 0.97 6 12 7.4e-06 0.00042 20.1 1.2 1 23 504 526 504 526 0.96 7 12 3.4e-05 0.002 18.0 0.3 1 23 532 554 532 554 0.97 8 12 2e-06 0.00012 21.9 0.6 1 23 560 583 560 583 0.98 9 12 1.6e-05 0.0009 19.1 2.5 1 23 589 612 589 612 0.95 10 12 0.00012 0.007 16.3 1.8 1 23 618 640 618 640 0.97 11 12 7.5e-05 0.0043 16.9 1.5 1 23 646 668 646 668 0.97 12 12 0.00075 0.043 13.8 0.1 1 22 674 695 674 698 0.92
Sequence Information
- Coding Sequence
- ATGGTGTTAACTTCAGAGAGAAAATACTTCAGTAGTGAATCACATATTGATGAAGGGAATACTTTAGTCCAGAATGACTTTATGTTAACAAATGACAAATGTTTCCTCTGTGATCGCGATTTCGTTGAAGGAGAAGACACTTTCCTAATTTTTGAAATGCGGCTGCGTGAGGATGGTGGAATTGATAACCCTTTGTCTCTTGTATTAGCAACTGCTTTAGGCagagaattaaatgaaattaactcGCATTCCAACTTACTCTGCTTGTCttgcaatacaaatattttggagTTTGAAAAACTACTTCATAACTTTTGCGAACTgcgaataaaaataatcaaagcgTATAATCGAACTGTTCAAATATACAACATAGATCCAATACTTATTGATGGTGAAAACGAGATATCTCGAATAGAGAAGCCTGAATTAAgtgaattaattgaaaatataatgatTGATGAATTGCATAGCAAAACTCTAGACGGAAATTCAACCGAATGCCAGAATGAAAGCTTAGGATCCTTTGGCGATGACACTGCAGAAGCTATTGAGACGAATGTTCTTGTGAACACAGAACTCACGTTGGATGACAGTGTAGTGGACTTAATAGAAGAGCTTACCGATAGCGAAGAAATGATTACTGAAtctaaacttttaaatattgaaacgCAATACGAGGCACAAAGTGAAAGTTCTCAATTCAATAATTACAGCGGCATTATTGCGAACTTAACAGAAAATCCTCAGCAAGATTTGATGATTTTCCATATGCAAAATGCCGACTCCAGAATCTCTGAACCCTTAATACATTCCGTAGACCAAGAACCCTCAATATGTGATCCAGATGAAAATTATAACAGTTcTTCCACTATAAATTGTGCAATTACAACTGACAACCCTGAAGATGTGAATGTTGTGACAGCGAATGCGcaaattaaaatggttttcgAACAAGTGAATAAcctatatttttgcttattgtGCGAGGAACAAAAGACAATGGCACCAGAAGCATTTGCAGAGCATATGCTCAAAAACCATGGTTTAAGTTTTTATTCTTGTGAGATTTGTTCTGCTGGTTTTCTTTCTATTGAAAGCATAAAAGAGCATATAGAAAGTATGCATTCAAATTTATCTAGCACTGAACAAGTTGAAAATTCAGAATATCAATGTGAAGAATGTCAAGAAGTTTTTAGTGATAATCAATTGTTGCGTGTACACAAACGAACGCACAGTAACGTTTCCTTACAATACGAATGCTCAGAATGTCAGAAGAGATACAGTTGCCGAAGAATGTTGCTTGATCACATGAATATGCATACCGGCAGTCGTCCATACAAATGCACGAAATGCTCCAAGGACTTCGCATCAAAATATACATTGCAAGGGCATATGAAAATTCATAGTGAACGCGTACGCCCATATAAATGTGATAAATGTAACAAAGCATTTCTTAACCAACAAACCTTCACTCATCATAAGAAGCTTCACATGGGAGAAAAGTCATTTATATGTGATATTTGTTCAAAGACCTTTAGCACCCAACACAATTTAGACGTTCATAAGATTGTGCATACCGGTCAGCGACCATTCATATGTCGAACTTGTGGAAAATCTTTCGCACGTCGTGCTGAAATTAAAGATCATGAACGTATACATACGGGAGAGAAACCTTATAAATGTGATATGTGCGATGCTGCATTCGCTCAGCGTTCCAACTTGATGACGCACCGAAAGTCCACACATTTAAATGAGAAATTACACCGGTGCGATCAGTGCGACCGTTCGTTTAAAAGACGCCGTTTGTTGCAATATCATATCAATGCAGTACACACAGGTGTGCGTCCTCACGAATGCGAAATATGCGGTTCTTCATTTGTTTATCCTGAACATAAGAAAAAGCATATGCTTATACACGGCAATACTAAACCATATACTTGTGAAATATGCGGTAAAGAATTTAACAGTTGCGCCAATCGCAATGCTCATCGTTACGTACATAGTACAAAAAAGCCATACGAATGTCTGAAATGTGGTGCCGGCTTTATGCGCAAACCATTATTATTGGCACATATGAAACTTGCTCAACATACGAACGACACCATTATTATTAACCAACCACATATCAGTGACAAAAGGCCGCTAAATTCAAAAAGAGAAATTAGCCTTGTTGACTTGTGTAATGAAACTAACGACGTTCCCGCGAACTCAAATTCACAAGATTCAAATTCAAGTGATGACAAAGCACTGCAATTAATTGCTCAGCACACAGAAGATGTTGCCGAAGTAGATAGTGTACAGTACCTGCAATTTGATGATTTAGATAAAGATGGTCATCAAATAATAACTTGGGTAGATATTGGGCGGGATAAAgatcataattaa
- Protein Sequence
- MVLTSERKYFSSESHIDEGNTLVQNDFMLTNDKCFLCDRDFVEGEDTFLIFEMRLREDGGIDNPLSLVLATALGRELNEINSHSNLLCLSCNTNILEFEKLLHNFCELRIKIIKAYNRTVQIYNIDPILIDGENEISRIEKPELSELIENIMIDELHSKTLDGNSTECQNESLGSFGDDTAEAIETNVLVNTELTLDDSVVDLIEELTDSEEMITESKLLNIETQYEAQSESSQFNNYSGIIANLTENPQQDLMIFHMQNADSRISEPLIHSVDQEPSICDPDENYNSSSTINCAITTDNPEDVNVVTANAQIKMVFEQVNNLYFCLLCEEQKTMAPEAFAEHMLKNHGLSFYSCEICSAGFLSIESIKEHIESMHSNLSSTEQVENSEYQCEECQEVFSDNQLLRVHKRTHSNVSLQYECSECQKRYSCRRMLLDHMNMHTGSRPYKCTKCSKDFASKYTLQGHMKIHSERVRPYKCDKCNKAFLNQQTFTHHKKLHMGEKSFICDICSKTFSTQHNLDVHKIVHTGQRPFICRTCGKSFARRAEIKDHERIHTGEKPYKCDMCDAAFAQRSNLMTHRKSTHLNEKLHRCDQCDRSFKRRRLLQYHINAVHTGVRPHECEICGSSFVYPEHKKKHMLIHGNTKPYTCEICGKEFNSCANRNAHRYVHSTKKPYECLKCGAGFMRKPLLLAHMKLAQHTNDTIIINQPHISDKRPLNSKREISLVDLCNETNDVPANSNSQDSNSSDDKALQLIAQHTEDVAEVDSVQYLQFDDLDKDGHQIITWVDIGRDKDHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192971;
- 90% Identity
- iTF_00191505;
- 80% Identity
- -