Bdor001052.1
Basic Information
- Insect
- Bactrocera dorsalis
- Gene Symbol
- -
- Assembly
- GCA_000789215.2
- Location
- NW:669344-685701[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0014 0.081 12.9 0.5 3 23 290 311 289 311 0.94 2 21 0.12 6.8 6.9 3.4 2 23 366 387 365 387 0.97 3 21 2.7e-05 0.0016 18.3 2.1 1 23 393 416 393 416 0.96 4 21 0.13 7.2 6.8 0.8 2 23 433 453 432 453 0.95 5 21 0.0049 0.27 11.3 0.4 1 23 467 490 467 490 0.92 6 21 0.059 3.4 7.8 5.3 1 23 499 522 499 522 0.97 7 21 0.00011 0.0062 16.4 0.5 1 23 528 550 528 550 0.96 8 21 7.6e-05 0.0043 16.9 1.5 1 23 556 578 556 578 0.96 9 21 0.0018 0.1 12.6 1.7 1 23 584 606 584 606 0.98 10 21 0.00049 0.028 14.4 3.7 1 23 611 633 611 633 0.96 11 21 0.51 29 4.9 0.5 1 23 638 662 638 662 0.93 12 21 0.04 2.3 8.4 2.6 1 23 1022 1045 1022 1045 0.96 13 21 0.00035 0.02 14.8 0.4 1 23 1052 1075 1052 1075 0.96 14 21 0.35 20 5.4 2.1 3 23 1083 1102 1081 1104 0.82 15 21 0.00041 0.023 14.6 3.8 1 23 1107 1129 1107 1129 0.94 16 21 0.0019 0.11 12.5 1.5 5 23 1140 1158 1138 1158 0.96 17 21 0.00016 0.0093 15.9 0.5 1 23 1167 1189 1167 1189 0.98 18 21 3.1e-06 0.00018 21.3 1.6 3 23 1196 1216 1194 1216 0.97 19 21 0.00071 0.04 13.9 2.8 1 23 1222 1244 1222 1244 0.98 20 21 1.4e-05 0.00081 19.2 0.4 1 23 1249 1271 1249 1271 0.97 21 21 0.0015 0.085 12.8 0.8 2 23 1277 1299 1276 1299 0.95
Sequence Information
- Coding Sequence
- ATGGTTAACCAATGTCGCGCTTGCCTCAGTTCGAGGGACACCTCCTTCATTCGTATGGAGACACACATTGGCGATGGTGTCGATTTCTTTACTTGCTTCAGCTTATGCACACAATTGGAAGCGGAACTAGATGACGGTCTGCCAGGAGTATTGTGCACACATTGTTCTCAAGATCTcgaaatatcttttaatttcCTGCAAAATGCCAGACAGGCTGATGGAATACTGCGTGAAAGCTTTTCACATAAGTACTTGTCCACCGAAATAGAATCATTGGATAGCGAAATGGGTGATACAATAATGGAGCCTTTAGATGTGGTAGAAGGCAGTGAAATGGAAGATTGTGTGGTTGAGGAAATCATAGAACACGTACATGCTCCAGAAGATGTTGCCGAAGATCGGGAAGATAGCAGTGTTGTAGAAATAATGGAGGTCGAAAAAAATGATCTGAACATTTGTGAAAGCTCTTTAGATGAGATAGAACTTATCGATAATAGTTATGTGGACCAAACTGTAGAGACGGCGGAGGTTGTGGTGGACGAGGTACATGAATCACAACCAAAAACAACAGAGTATTATGCAGAAGATGAAGGTGACGAAGAGTACCTAAAAGAGTACAAAGAAGATGTGCAGCAATCGGACGCAGACAATACGGGATCAAAAGGAGGAAAATGGAAATGCATAGAATGCAAACTTGTTTTGTGTGGCGATGTTTCTTATGAAGGCCATATGAATATGCACCGTTCATTGCGACCGTACAAATGTACCGTATGCCTGTGTGCATTTCGTTGCAAAAATAAACTAGATCACCATATACAACTGCGACATACACAAGAGAACGAGCCTCAAACCAGCAACCTTAACAATTgtaaaaagtgtacaaaaatcTTCGAAACAACCGAAGAATTACAAGAGCACCAGGAATTAATACATCCCGATAGTTATCCTGTACAATGTAGACGCTGTCCGTTGTTACCACCATTCGCGCGGACAAAATTAACGGAACACTTTCGTAACGAACATCCCGCGGAACATCGAAAATACTTCCCCACGGTGGGTAGGCCACCAAATGAACCAGCCAAACCAACACCATGGCAATGTGAAGTCTGCAAATGTTATCTGCGCTCAGAAAGCGCATTGCGTGATCACAGGCATACGCACCAGAATGAACGACCGCATGAGTGCCAATTTTGTGCGAAACGTTTTGTTACTACCAGTAATTTACGCCAACATATGCGCGGTGTACACACCGAGGAATATGAGAAGCTAGTTAATGAAGGCGGTGATACGATAGTGCAATGTGAAATGTGCAAAAAGCAATTACTTAGACGAAATCTCGAAAAACATATGGCCTTACATGTGAAAAAAGAGCGCGAGGCgaaagagactcaaacgaaatTTCTCTGTGCTTACTGctCACGTGAATTCTCGAATGCGAAATCGCTCAGTCTGCACGAACAAAACGTGCATCTTGTCAAATTGGAGGAGCCGAAATATGAATGTGGTATTTGTAAGCGTAAATGTTATCAACAGCGTGATCTCAATTGCCATATGCAGCGTGTGCATCTAGCGGAGCGCAAACACTATTGCAATGTATGCGGTAATGCGTTCAAGAGCGCTTGGCAGCTGACCGCGCACCGGCTATTGCATGCCGAAGACAAGTCTTTTGAGTGCATACACTGTCAACGGCAATATACACGGCAAGCGGATTTAATTGtgcacatgcgcacacataccgGCGAACTGCCATACGCTTGCCACTTGTGTGGTAGACGTTTCGCGATCAAAGTACGACTCACTTATCACTTGCAACGGCATGAAGGCGTCAAACATTCGTGCACGTATTGTGGAACTGTCTATTACAATCGTAATCAACTAAAGGAGCATCTCTTCAAGCACACTGGCATGCCTTATCGCTGTGAATTGTGTCCAGAAGTTGGATTTACGCGCCGTTTGCGTTTTTCCAATCATATGCAGCGTGTCCATAATAAAATTCTAACAGCTGACGAATTGACAGCTGTGTTTGCGAAATACACGGGAAAGGCGATACATTTCAATACCAGCAACAAATCTCATGAGAATATGGACTCACAGGAGTTACCTGATTTCATTGTAGATGAAGAGAAAGAAGATGAAGATATGATGTGTTGCTTTcgaaaagaaattgattttattagaTGTGTTCGTTTCAAAAAAGGAATCTGCTTGCTAACAAACATGAATTCGCCCAGTCGCGCTGAAATCCACTTTGAAGACATGCGATGCTGTCGTTCTTGTCTGTCCGTGGCTTCAGAAGATGAGCTTGAGGATTATATTGATTTACTGGAGACTTTTACCACTGATTGTGCAACTACTACCTTACTAGAGGCTTTCAATAAATGCACTTCATTAAATGTGCTGATAgaagattttattattgaagGATATCCGCCTTGTCACTACATATGTGGACGTTGTCGTTTAGAACTTTCGCAAGCTAATGAGTTTATAACTCGAGCACAACTAAATAACCAGTTATTAAAAGAACAATATAATAGTGACAAGTCAGTACAATCGCCAATTAGTGATACTGAGAttcttgaaattgaaattaaaaatgaatcgcTTGCGCAAAAATTGGAGCATGATGAAAAAGCAGATGAATTGAAAACTGTGGTAAAAGGGGAATATAAAAGTGCTAAATCAATACATTCGCCAATAAATCATACTGAGAttcttgaaattgaaataaaaaatgaagcgCTTGCTCAAAAATCGGTGCATGATAAAAAGGCAGATGAATTGAAAACTGTGAGATTTACAGAGGTTGAGTTTGACAACCAGAATTCTCCAGAGCCGGCTGCCAGTGAGATCCTTGAGCCGACGGATGATGATATTCAAGAAGATAACGAAATTACGCCAACAACACTAATAAGTGTTGAGCGCGTAATATGTAACGATgataaaaattctgtaaataattCCCAGACATCGATAGGTAGTAATGAATTTGTACTAAGTGCTAACATCTCCCGAAATGAAGACGACACAAATATTGAAGAAACAGATAAGGcttattttgaattcaaatgtGAGTTTTGTACTTGCATATTCGAGTTTCAAAGAGATTTACTGCAACATTATGAAATTGATCACGCGGACAAAACACTTAATTTTCCCTGCGACATTTGCGAAAATCGATTTGTAACGAAAAATGCTTTACGTCTGCATCGACGGCAGGTGCATCAAAAAGATGAATATCTCGATTGTGAGCATTGTGGACGTACCGTATTAAAAACATTCTATAACGTACACTTGAGACGCCACAAACAACTTAAATTCTTATGCAGCAAATGCCcaaaaaGATGTGTTTCGCGTTACACACTCAAGAAACATATGGAATTGCACTCCGAAGAGCGTGACCGCAGTATTGAATGCTATTGTGGTAAACGTTTCTATTCATTGGAACATCTGCAATTACATCAAACCATTCACATTTCACCCGAAGATAGAGCAGTATTCGAATGTAGTGTTTGCTCCAAAACATTCTTACGAAAAGCAAATCTTGGTTTACACATGCAAATGCATCGCGGCGAGACTATGGATTGCCCACATTGCGATAAGAAATTTGTAAGACGTAAAGATCTCGAAATTCATATACGTTTCCATACTGGCAATTTTCCATACTCTTGTTCGATGTGTGACCGAAAGTTCGCCATTAAGGGACATCTTAATTACCATGAGAAACGTCATCTGGGCGTGCGCTACAAATGTGACGATTGCgagaaaacatttataaatctGGCCGGTTTGCGGCAACATCAGTATGAGCATACGGGTATGCCATTAATGTGTAGTGTTTGTCAGCGTGGCTTTCCAACTAAATTCAAgATTCGCCGCCATTTGCGCAACGTACACAAACATCTTTTTAAGAATACTGACTACTCAGATGAATTAGCAGAAAAGTATATAATTGCAACGACCAATTCAAATcaagcaataaataaagaagcaaaatcAGTATATGTACTGGAAGACTCAATCGAAATGCTTGAGGAGCATGCCGAAGACATTCCGTTAAATATGCTGTCCGTTTAA
- Protein Sequence
- MVNQCRACLSSRDTSFIRMETHIGDGVDFFTCFSLCTQLEAELDDGLPGVLCTHCSQDLEISFNFLQNARQADGILRESFSHKYLSTEIESLDSEMGDTIMEPLDVVEGSEMEDCVVEEIIEHVHAPEDVAEDREDSSVVEIMEVEKNDLNICESSLDEIELIDNSYVDQTVETAEVVVDEVHESQPKTTEYYAEDEGDEEYLKEYKEDVQQSDADNTGSKGGKWKCIECKLVLCGDVSYEGHMNMHRSLRPYKCTVCLCAFRCKNKLDHHIQLRHTQENEPQTSNLNNCKKCTKIFETTEELQEHQELIHPDSYPVQCRRCPLLPPFARTKLTEHFRNEHPAEHRKYFPTVGRPPNEPAKPTPWQCEVCKCYLRSESALRDHRHTHQNERPHECQFCAKRFVTTSNLRQHMRGVHTEEYEKLVNEGGDTIVQCEMCKKQLLRRNLEKHMALHVKKEREAKETQTKFLCAYCSREFSNAKSLSLHEQNVHLVKLEEPKYECGICKRKCYQQRDLNCHMQRVHLAERKHYCNVCGNAFKSAWQLTAHRLLHAEDKSFECIHCQRQYTRQADLIVHMRTHTGELPYACHLCGRRFAIKVRLTYHLQRHEGVKHSCTYCGTVYYNRNQLKEHLFKHTGMPYRCELCPEVGFTRRLRFSNHMQRVHNKILTADELTAVFAKYTGKAIHFNTSNKSHENMDSQELPDFIVDEEKEDEDMMCCFRKEIDFIRCVRFKKGICLLTNMNSPSRAEIHFEDMRCCRSCLSVASEDELEDYIDLLETFTTDCATTTLLEAFNKCTSLNVLIEDFIIEGYPPCHYICGRCRLELSQANEFITRAQLNNQLLKEQYNSDKSVQSPISDTEILEIEIKNESLAQKLEHDEKADELKTVVKGEYKSAKSIHSPINHTEILEIEIKNEALAQKSVHDKKADELKTVRFTEVEFDNQNSPEPAASEILEPTDDDIQEDNEITPTTLISVERVICNDDKNSVNNSQTSIGSNEFVLSANISRNEDDTNIEETDKAYFEFKCEFCTCIFEFQRDLLQHYEIDHADKTLNFPCDICENRFVTKNALRLHRRQVHQKDEYLDCEHCGRTVLKTFYNVHLRRHKQLKFLCSKCPKRCVSRYTLKKHMELHSEERDRSIECYCGKRFYSLEHLQLHQTIHISPEDRAVFECSVCSKTFLRKANLGLHMQMHRGETMDCPHCDKKFVRRKDLEIHIRFHTGNFPYSCSMCDRKFAIKGHLNYHEKRHLGVRYKCDDCEKTFINLAGLRQHQYEHTGMPLMCSVCQRGFPTKFKIRRHLRNVHKHLFKNTDYSDELAEKYIIATTNSNQAINKEAKSVYVLEDSIEMLEEHAEDIPLNMLSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -