Basic Information

Insect: Bactrocera correcta
Gene Symbol: ush
Assembly: GCA_027475135.1
Location: CM050325.1:83503624-83516653[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.009 1 10.6 0.1 1 20 313 332 313 334 0.90

2 9 0.00033 0.038 15.2 0.8 1 23 395 417 395 417 0.98

3 9 0.06 6.9 8.1 0.8 2 20 448 466 448 468 0.92

4 9 0.057 6.5 8.1 2.9 2 21 873 892 872 893 0.93

5 9 0.011 1.2 10.4 0.0 3 21 935 953 933 954 0.91

6 9 0.29 33 5.9 0.1 1 23 1030 1052 1030 1052 0.93

7 9 0.016 1.9 9.8 1.3 1 23 1058 1080 1058 1080 0.99

8 9 0.0011 0.13 13.5 0.7 1 23 1150 1173 1150 1173 0.96

9 9 0.42 48 5.4 0.4 2 20 1304 1322 1303 1324 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.009	1	10.6	0.1	1	20	313	332	313	334	0.90
2	9	0.00033	0.038	15.2	0.8	1	23	395	417	395	417	0.98
3	9	0.06	6.9	8.1	0.8	2	20	448	466	448	468	0.92
4	9	0.057	6.5	8.1	2.9	2	21	873	892	872	893	0.93
5	9	0.011	1.2	10.4	0.0	3	21	935	953	933	954	0.91
6	9	0.29	33	5.9	0.1	1	23	1030	1052	1030	1052	0.93
7	9	0.016	1.9	9.8	1.3	1	23	1058	1080	1058	1080	0.99
8	9	0.0011	0.13	13.5	0.7	1	23	1150	1173	1150	1173	0.96
9	9	0.42	48	5.4	0.4	2	20	1304	1322	1303	1324	0.91

Sequence Information

Coding Sequence: ATGGACCTGCGCATGCGCAGCCCAGCGCGTCACAGTGCAGTTGAAGGAGGCGTAGAAACTGGTGCGGGACAAAGCGCGTTGCACTCAATTATCTACAAATTGACAGGTCAACGCGCAAGCGCAACGACACCGGCAAAACAACAACGAACTACTTTATGTCGAGGTGCAAAAAAGGTGGCAAAAACAACGCTGTGGTTGCTTTATTTTCCTGCCATTGAAATTGTAATGACAATGCGATCGGCAATTGGTTACCAACTAGCGCGCGACAAGTTGAAAGCGTCAGGTCCAAATTCCAAAGATCTGAGTCCCGCTGACTTAACAGATGACCAACAGCATTTAGAGCGTGAAGATCATCGGCTTGAAGAGACTGATATTGAAATGGAAGAAGATACAGATACAAGAGAGGACGACAATCGAATACTTGCTATAAATCCACATCGAATATCGCCAAATAGAAGAGAGGAAAACGCATTTCACAACGCCAACGAGCATATTGTACACAAAATCGAACTAAATATAGAACGTGAAAAACTGAAAGATCTAAATGAAATTAGTATCGAATCAACTTCAATAAATTCAAACGACGTACGTCCTGCCAGCAGCAGCCCAAATAAGGAAGAACTGGCCGGCAACGAGACACCACCGATGTCTTCACCAACAAGCGTACTGCCAAAATTGCGCTTAAATGCACTTTTGGCTTCCGATCCGGCCTTGAAACCGGATGCCAAAGACCTAAAAGTTTTACACGAAGAGACGCAAACGAAAAATAGACTCGCACAGCTGCCACCGCCACCGGCGCTTACCAAGCAGGAAGATATGGACACTTTAATGAGTGCGCCAGTAACTAATGTCGTGGAACCGGTGTTGAAAACGTCATCTGTTGGGGCCTCATCATCACCAGCTGCCACAGCGGATATCCCACCACGCCTGAAATTGTTCATGTGCTTGCCCTGTGGCATACACTTCAGCTCACCCTCAACATTGGAAGCACATCAGGCCTACTATTGCTCGCATCGTAATAAAGACATGGAGTCTGATGGAGCTTCGCTGTCCACAGTTATTACTGAAAAAACTGGCACATTGAATGCTAACACGCCCAACGCTTCTAGTGGTACCATCAATATCGGCGCTGGCAATATCGGTAGCGAACACGTCGCCAAATCTATCAAGACGGGGAAACAATATGCATGTACACAATGCTCTTACAGCGCGGACAAGAAGGTCTCCCTCAATCGGCACATGCGGATGCATCAAACATCGCCCGCGCATAGTAGCAGCGCGCCACCATCAAACGGCGCCGCCACATTAGATGAGGGTGGTTCTAGTCAACAAACGGATCGTTACTGCAGCGATTGTGATATTAGATTCAATAATGTAAAGACGTATCGTGCACACAAGTTGCATTACTGCAGTTCACGCCGCAATGAGGGACAACTAACACCCAAGTTGGAAGTAAGCACCGCTAATATAATTAAACCGCCGGTAGGCGCGGCTGCCATCAGTCCTCAGACGCGCACAAAGACGCCGACGCCAGCTATGGTGGCCGCTGCCGCTGCGGCAGCTGCTGCTGCAGCCGCGTCGTTGCAAGCACCACCGCCACAACCATTTCTGGCTTTACCCACCAATCCAATATTGATAATTCCCTGCTCGTTAATACGAGCGGCGAGCTGGATACCGGGACCACTCTCATCAGCATCGGCGTCTATTTCAAACCCTGATACCACCTGTTATATGTTGGACAACGGTAACTTGAAACCATTAGCCACAGCTTTGAATATGGGTGGATTAAATGCCAACAATGCGGCGAATAATAATAACGTAGCCGCAAGCGCAAATATTCCACAAATGCCGACGGTCGAAACACCGCCGGTTCGTCAACCTTCACAACCTAATAACAGCGACGTGCTCCCCGTGGAGAAAAATGCTGGACGTAGTAGCGACCGCAGTGAGACCTCAACGCCAAAGCGAAAAGATGGTGCGCGTGAGTCTGCACCTTTGGACCTTTCACTACGCCATCACGATCAGCAACGTATGGATATGGAAACTCTGTTGGAGGCAAGTAAGGAGAACTTGTCAATGGATGAAAGTGGCACAGTGACACCCGAACAGATTGTATGCGCACCCTCATTACCAAACAGTCCATCGATGAGTCCATCGCCAAAACGACGTGCAATAAGTCCACGAAGTTCCGGTGCCGGTAGCACATCTTCAATGTCACCACCAGTAAACGTTTCGACTGCATCGCTGGTGGCAGCTGCCGCCGCCAGCAACATGCTTGATCTACCACTGCGTTCAATGTTACCCGCCGATCTTGCGTTGAAACTCTCCGAAACCAATATCATGAATCCATTGCTAGCCAAACAAAACTTCGAACTTGCTTTAAAGCTCTCGGCGGCCGCTGCTGCTGCAGTAAACAACAGCTCACCAGCTAATGTGGGTAATGGGTCGACACACGCTGAGTTGGCTGCAGCGGCGGTTGCTGCTGCCACAGCAAAGTCTTCGCTACTCGGCATGCCGGTTTTGAGCAACCCTACCTCGACCGGTAATAGCGGTAACGTAGGTGGCGGACCCAACGCTGCCGTGCAACCACAAATTTATGTCAAACAGGGTGTTTCCAAATGCAAGGAGTGCAACATTGTCTTCTGCAAGTACGAAAACTATCTGGCACACAAGCAACACTACTGTTCGGCACGCAATCAGGAGGTTGGCGAGGGTGAAGCCAAAGTGGCCAACACTTCCCCTCTTGGCGTCGGTGCGACCGCAAGTGTTGAAACGACACCGGTCGCCTATCAGCAACTAATTTGTGCAGCCTGCGGCATCAAATACACATCATTGGACAATTTGCGTGCTCATCAAAATTACTACTGCCCCAAGGGTGGCGGCACGGCAGGCGCAGCAACCGTTGCAGCTGCAGCTGCGACAGCCGAAACTGGACAGTTGCCTCTGACTAAGGAAAAATGTGGCAAATGCAAGACAATTCATGAAATTGGTTTGCCATGTCCACCGCCGCCCGCACTGCAACAAACGCAAAACAGCGCACAGCACATCGCGGCGACATCGACACTTTCAGCACCCAATCAAAATATATATAAATGTCCCGTTTGTGATGTTGTTAGTCTGACTGCCACCGAAAGTCGAAAGCACATGGAGACGCATGGCACTGTAAAGGCATTCCGCTGTAGCATTTGCCGCTACAAAGGCAACACTTTACGTGGAATGCGCACCCATATCCGCATGCATTTCGACAAGAAGGCCACCGACCTCAATGAGGAGCACTACATGTCCTGCATCCTGGAAGATGAGGGCTTGGAAATCCCTAGCATGGCTTCTACACTGAATCAGGAACAATTGGCGCAGCAAATAGCTGCTATGCAACAACAGCAACATCAGTTGCAGCTGCAAGCTCAGCAGCAGCAACAACAACAACAGCAGCAGCAACAACAAATATTCAATTGCGATTTATGCAATTACTCATCCTCCTATAAGGGCAACGTGCTACGCCACATGAAACTGGTGCATCCTCACATCAACATTCACTCACCATCAATTTCACCTGAAGCAAATGACCTGGAAACTGCCGATGTAGCTGGTTTGAATGGAGAGAGTGGCAATTTCACAATAAAAAGCGAGCCAATGGATCAAGCGCCTAACGTCAGTCTAACGAATTCGGCACGATTGCTGGACAATAACAACACAACCATATTGGCTGCCACCTTGACAGCACCACCACCGCTGAACAGTCTCGGCCCCGAGCAAATGCCACATATTAAAACTGAACCCTTGGACATCGGAGGCGACAGCCAACCAGCAACCACACCACTACCAGCGCTCAACTCACCCGCTATTGGACCACCGCCACCTCTCAATGCTGCCACCGACGACAATGCCACAGTAACGGCAAATCAAAAATATTGTCAAACATGTGATATTTCCTTCAACTACATGAAGACCTATGTGGCACACAAGCAATACTATTGCAAGAATAAATTACGACGCCCGGAGGCCAGCGAAAGTCCCAGTCCCAACGCTGGACTCATGCCAATATCGGTGGCGTCGCCCAACTCGTTGCTGCTGTTGCAGAAGAACAAAGAGAATCTGCAGCAGGAGGCAGCCATTTGA
Protein Sequence: MDLRMRSPARHSAVEGGVETGAGQSALHSIIYKLTGQRASATTPAKQQRTTLCRGAKKVAKTTLWLLYFPAIEIVMTMRSAIGYQLARDKLKASGPNSKDLSPADLTDDQQHLEREDHRLEETDIEMEEDTDTREDDNRILAINPHRISPNRREENAFHNANEHIVHKIELNIEREKLKDLNEISIESTSINSNDVRPASSSPNKEELAGNETPPMSSPTSVLPKLRLNALLASDPALKPDAKDLKVLHEETQTKNRLAQLPPPPALTKQEDMDTLMSAPVTNVVEPVLKTSSVGASSSPAATADIPPRLKLFMCLPCGIHFSSPSTLEAHQAYYCSHRNKDMESDGASLSTVITEKTGTLNANTPNASSGTINIGAGNIGSEHVAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAHSSSAPPSNGAATLDEGGSSQQTDRYCSDCDIRFNNVKTYRAHKLHYCSSRRNEGQLTPKLEVSTANIIKPPVGAAAISPQTRTKTPTPAMVAAAAAAAAAAAASLQAPPPQPFLALPTNPILIIPCSLIRAASWIPGPLSSASASISNPDTTCYMLDNGNLKPLATALNMGGLNANNAANNNNVAASANIPQMPTVETPPVRQPSQPNNSDVLPVEKNAGRSSDRSETSTPKRKDGARESAPLDLSLRHHDQQRMDMETLLEASKENLSMDESGTVTPEQIVCAPSLPNSPSMSPSPKRRAISPRSSGAGSTSSMSPPVNVSTASLVAAAAASNMLDLPLRSMLPADLALKLSETNIMNPLLAKQNFELALKLSAAAAAAVNNSSPANVGNGSTHAELAAAAVAAATAKSSLLGMPVLSNPTSTGNSGNVGGGPNAAVQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEVGEGEAKVANTSPLGVGATASVETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGTAGAATVAAAAATAETGQLPLTKEKCGKCKTIHEIGLPCPPPPALQQTQNSAQHIAATSTLSAPNQNIYKCPVCDVVSLTATESRKHMETHGTVKAFRCSICRYKGNTLRGMRTHIRMHFDKKATDLNEEHYMSCILEDEGLEIPSMASTLNQEQLAQQIAAMQQQQHQLQLQAQQQQQQQQQQQQQIFNCDLCNYSSSYKGNVLRHMKLVHPHINIHSPSISPEANDLETADVAGLNGESGNFTIKSEPMDQAPNVSLTNSARLLDNNNTTILAATLTAPPPLNSLGPEQMPHIKTEPLDIGGDSQPATTPLPALNSPAIGPPPPLNAATDDNATVTANQKYCQTCDISFNYMKTYVAHKQYYCKNKLRRPEASESPSPNAGLMPISVASPNSLLLLQKNKENLQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00191670;
90% Identity: iTF_00191670;
80% Identity: -