Bcor028522.1
Basic Information
- Insect
- Bactrocera correcta
- Gene Symbol
- -
- Assembly
- GCA_027475135.1
- Location
- CM050323.1:123487991-123490075[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-09 3.2e-06 27.4 0.0 2 34 11 43 10 51 0.94 2 2 9.8 1.1e+04 -3.1 0.0 16 24 94 102 94 103 0.81
Sequence Information
- Coding Sequence
- ATGGCTCCTGGTAAGCATAAAAATTGGAATCCCGAGGACATGAAAAAGGCGATCACAGCGGTGCGATCTAATACCTGCGGTTATCTGAAAGCAGCTAAGATGTACAATGTCCCTAAGTCAACTTTAATAAGACTAGCGTTAAAGAAAGACACCGAAATCGAAAAGGGTCATAACACCGATGGAAATATCTCCGGTTCCTATAAAAAAAAGAAGCCTTCCAATCGTGGCAGGCCAGCAGGAAAGTCCACGTCCACATCTTCGCCTTATAAAAAATCTTTACAAATTTCGTTGGAGAAAGCATCGGAAAAAGAACCTCTAAGAAAAACCAACAGACGACAGGATATTGATTCGAATGAACCCAGCTCTTTCAAGGCAATTATCAAAAAACTAAATTTTGCAAAAGAAAAGTGTACAGAACCCAAAAAACACCAAGATAATTCTAGTCAACCCAGCACTTCCAAAACACTTATGAAATCAATAAATTCAGCAAGAGAAAAATGTTCAGGTAAATTAAGGAAAAAAAAGAAAACAAATTCCTCATCCTCTTCGGACTTGGATGACAATTACAGTGTCCGGAACGAATCTGACGGTGAAATTCTAGAATTTATCGGTCCGGTGAAATGTGTCTCTTGCAAAAATTGGAACCATGAGGAATGTGCTGGTTGTGAGCAAGATCTCTTTATATGCGACATGTGTACACAATAA
- Protein Sequence
- MAPGKHKNWNPEDMKKAITAVRSNTCGYLKAAKMYNVPKSTLIRLALKKDTEIEKGHNTDGNISGSYKKKKPSNRGRPAGKSTSTSSPYKKSLQISLEKASEKEPLRKTNRRQDIDSNEPSSFKAIIKKLNFAKEKCTEPKKHQDNSSQPSTSKTLMKSINSAREKCSGKLRKKKKTNSSSSSDLDDNYSVRNESDGEILEFIGPVKCVSCKNWNHEECAGCEQDLFICDMCTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -