Basic Information

Gene Symbol
nfxl1
Assembly
GCA_032445375.1
Location
CM063640.1:307021931-307083023[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.3 7e+04 -3.5 1.1 15 19 194 198 193 198 0.81
2 20 0.18 9.6e+03 -0.8 0.8 4 10 229 235 228 235 0.95
3 20 3.5e-08 0.0018 20.7 16.6 1 19 243 260 243 260 0.99
4 20 4.9e-09 0.00026 23.4 14.1 1 18 296 313 296 314 0.98
5 20 1.7 8.8e+04 -3.9 1.1 8 13 319 324 319 325 0.73
6 20 5.6e-07 0.03 16.8 13.7 1 19 349 367 343 367 0.86
7 20 3.9e-06 0.21 14.1 9.7 1 18 402 419 402 420 0.96
8 20 0.79 4.2e+04 -2.8 0.4 1 5 429 433 429 438 0.73
9 20 6.9e-07 0.037 16.5 18.1 1 18 454 471 454 472 0.97
10 20 1.6e-09 8.7e-05 24.9 14.8 1 19 481 499 481 499 0.99
11 20 2 1.1e+05 -4.3 1.7 15 18 528 532 527 533 0.66
12 20 7e-05 3.7 10.1 8.9 9 19 547 557 545 557 0.89
13 20 0.063 3.3e+03 0.7 4.7 4 12 569 577 560 577 0.87
14 20 1 5.4e+04 -3.2 5.3 14 18 606 610 606 611 0.92
15 20 0.28 1.5e+04 -1.4 0.4 4 10 645 651 644 651 0.92
16 20 1.2e-06 0.066 15.7 4.6 1 12 657 668 657 672 0.93
17 20 2.1e-06 0.11 15.0 15.8 4 18 699 713 697 714 0.92
18 20 2.5e-06 0.13 14.7 12.3 1 17 759 774 759 778 0.96
19 20 0.18 9.5e+03 -0.8 0.5 6 11 809 814 808 815 0.88
20 20 1.5 7.9e+04 -3.7 1.1 8 12 929 933 923 933 0.67

Sequence Information

Coding Sequence
ATGTACCCagtggGCGGGGAGATGGCGTGGCAGAGAGGCCGCGGCCGTGCCAGGCCGCTCGACGCGGTGGCCAAGGTGGTGGCGGAAGCGGAGGGAAACAAGCCCTCCCGGGCCGCGCAGAAGGGCAGGGGCCGTGCCGGAACAGCGGAGACGGAAGGTGGTGAGCCCTCCCGGGCCACGTCTGCGCAGCGCAGGTTCCAGGAGGCGCGCGCACAGCAGCAGGCGGCCATCCAGAAGCACGTCAAGACGGACTACGAGTcatcggaggaggaggaggatctGGAGAGCGAGGACGTGCTGGGTTCGGTGCTGCAGTCGTACGCGCAGCTGGGCGGTCGCAGTGATGACCTGGGCCGCACACAGAAGTTCCTGGAGGAGATGTTCGTGTCGGGGGCGGCCACGTGCCTCGTGTGCATCGCGTCCGTCAGGAGGGCAGACGCGATATGGAGCTGCGAGGGCTGCTACAGCTTCTTCCACCTGACGTGCGTGCAGCGCTGGGCCAAGGACAGTGTGGCGCACCAGCGACGTGCCCTCGAGGGCCTCCTGCGCGGCCATACAGCTCCTGCCTTCCGCTGGGCGTGCCCCAAGTGCCGGCGGGAGTACGAGGAAACCAGCGCACCGCAGCGCTACGTGTGCTTCTGCGGGCAGTCCCAGGACCCACCCCACCACCCCTGGCTGCTGCCCCACTCGTGTGGCGAGACGTGCGGCCGGCTACTGCAGCCCGAGTGTGGCCACCGCTGCCTTCTGCTGTGCCACCCAGGGCCGTGCCCGCCGTGCCCCAAGATGGTGTCCGTGCGCTGCCACTGCGGGCGCTCGGGCCCACGCATGCAGCGCTGCAGCCGCAAGGCGTGGGCCTGTGGCGGGAAGTGCGGGCGCACGCTGGGGTGCGGGCGACACCGCTGCGACCAGGCCTGCCATCCGGGGGAGTGCTCGCCCTGCGACCTCACCAGCCTCCAGGCCTGCCACTGCGGTGCCCGCTCCGAGCAGCGGCTGTGCGCCAGCCCGCGCTGGAGCTGTGACAAGGTTTGCGGGGAGCGGCTGGGGTGCGAGCGGCACAGCTGCGAGCGGGTTTGCCACGCGGGGGAGTGCGGAGCCTGCCCGCTGTCCGGTCCCCGCACCTGCCCCTGCGGTAAGACAGTGCACCGGCTCCCCTGCACGGAGACGGTGCCCCTGTGTGGCGACACCTGCGGGCGCACGCTGCTGTGTGGTCGACACGCTTGCTCTCGGCCGTGCCACCGCGACGCCTGCGGTTTGTGCCTGGAGGTGGTGACGCGGCCGTGCCGCTGTGGCCTGCACTCCAAGGAGCTGCCGTGCCAGAAGGAGTTCCTCTGTGACTCCAAGTGCAAACAGCTCAAGGACTGTGGCCGCCACCCATGCAACCGCAAGTGCTGCGATGGTAACTGCCCGCCGTGTGAGAAGGAGTGTGGGCGCACGCTGCGCTGTGGGAACCACAAGTGCGCGGGCGTGTGCCACCGTGGGCCGTGCTACCCCTGTCCACGCACGGTGCAGGTCAGCTGCCGCTGCGGGAAGACGAGCGTTGCAGTGCCGTGTGGCCGGGAGAGGAGGACGCGCCCCCCACGCTGCCCGCTCCCTTGCAAGCAGCCGCCGGACTGTCACCACGCCCGGCGGGAGAAGCACCGCTGCCACCCGGGCGACTGCCCCCCGTGCCGCCAGGTGTGCGGCCGTGTGCGTGCTGCCTGCCCCCACCTCTGCCCCGCGCCGTGCCACTCGGCCGTGCTGGTGCGCGTGGAGGCGGCACGGCGCCCGGCCGGGCCGTGGGAGGCGGTCTCTCCACAGCTGGAGGTGCGCGACCTGCCCTGCCCGCCGTGCGCGGTGAGTAGCGTGCGTCAGAGGGACAACAGGGTGCCGGTGCCAGTGACTTGCCCTGGTGGCCATGAAACCAGTGACCAGCCATGCTCTTCTGCTCGGCCGCACCCTTGCGGGCGTGTCTGCGGACGTGCTCTGCCATGCGGCAACCACAACTGCTCCAAGCCGTGCCACACCGTGTCGGGCGACACAGACTCGTCTCTGGCTGGGCCGGAGTGCGAGGCATGCGAGCAGGGCTGTGCCAAGCCACGCCCCGAGGGCTGCGCACACGCCTGCCCCGAGGCGTGCCACCCGGGGCCGTGCCCGCCGTGCGCGCAGATGGTGCGTCTGGGCTGCCACTGTGGCCTGGCACAGCCGTGGGTGCGCTGCGGGGAGTGGACCGGCGCCGCGCCCGAGCAGCGCCGTGCGCTGCAGAGCTGCCGGAACCAGTGCCCGcgcaagTACCCGTGCGGGCACCGCTGCCGGGAGGAGTGTCATCCGGGGGACTGCCCCAGCGCGGAGCTGTGCCGACGCAAGGTGAAGGTGCTCTGTGCGTGCCAGCGACTGCGTCGGGAGTTCTCCTGCGACGTGGCCCGCGCTGGCCTGGCCGTCGTGCCGTGCGACGACGCGTGCCACGCTCGCCAGCGCGAGCAGCTGCAGGTACGTGCACCCAGACACTGGCCATGGTTACTGGGGCGCGCTTTCGCAACAGGCCGCGTGGTGTGGCCGCACGTCTGGGTGGAAGGGGCGCGCGAGGCGGAGGAGTTGCGTCGCAAGGAGCAGGAGGCACGTCGCGACCAGGAAGAGCTGGAGCGCTTCCAGAGGAAGTTCCAGCCGCAGCGCAAGCGCCGGGACCGCGGGCCAGTGGAGGAGACGCGGGGGCGCCGCCTGCCCTCGCCCTACTGGCTGCTGCCGCTTGCAGCTCTCGCGGTCGCTGTCTACCTCGCCTGGGCCCTAAGTCacgagtgcggctggggccagtcgtgtcatcccgcgccgacccgacaccGGAAGCGTAGAGAAAGGTTGACAAGCcgcatcatcccgggccgactCGACACCCGAAtcgtcgagaagggcatcggcagcTCGCGGGATTCCCAATTGGTGCCaggtaacggcgccgaggcagggcgCCATGCGAGAAGCggcggggaggaggggggtaACGACAACCCTTGTAATCTGCCAGGCACGCGTGACATGTCTCACGTCAGCGGTGgtcgcatgacgtcagtggccgtgtga
Protein Sequence
MYPVGGEMAWQRGRGRARPLDAVAKVVAEAEGNKPSRAAQKGRGRAGTAETEGGEPSRATSAQRRFQEARAQQQAAIQKHVKTDYESSEEEEDLESEDVLGSVLQSYAQLGGRSDDLGRTQKFLEEMFVSGAATCLVCIASVRRADAIWSCEGCYSFFHLTCVQRWAKDSVAHQRRALEGLLRGHTAPAFRWACPKCRREYEETSAPQRYVCFCGQSQDPPHHPWLLPHSCGETCGRLLQPECGHRCLLLCHPGPCPPCPKMVSVRCHCGRSGPRMQRCSRKAWACGGKCGRTLGCGRHRCDQACHPGECSPCDLTSLQACHCGARSEQRLCASPRWSCDKVCGERLGCERHSCERVCHAGECGACPLSGPRTCPCGKTVHRLPCTETVPLCGDTCGRTLLCGRHACSRPCHRDACGLCLEVVTRPCRCGLHSKELPCQKEFLCDSKCKQLKDCGRHPCNRKCCDGNCPPCEKECGRTLRCGNHKCAGVCHRGPCYPCPRTVQVSCRCGKTSVAVPCGRERRTRPPRCPLPCKQPPDCHHARREKHRCHPGDCPPCRQVCGRVRAACPHLCPAPCHSAVLVRVEAARRPAGPWEAVSPQLEVRDLPCPPCAVSSVRQRDNRVPVPVTCPGGHETSDQPCSSARPHPCGRVCGRALPCGNHNCSKPCHTVSGDTDSSLAGPECEACEQGCAKPRPEGCAHACPEACHPGPCPPCAQMVRLGCHCGLAQPWVRCGEWTGAAPEQRRALQSCRNQCPRKYPCGHRCREECHPGDCPSAELCRRKVKVLCACQRLRREFSCDVARAGLAVVPCDDACHARQREQLQVRAPRHWPWLLGRAFATGRVVWPHVWVEGAREAEELRRKEQEARRDQEELERFQRKFQPQRKRRDRGPVEETRGRRLPSPYWLLPLAALAVAVYLAWALSHECGWGQSCHPAPTRHRKRRERLTSRIIPGRLDTRIVEKGIGSSRDSQLVPGNGAEAGRHARSGGEEGGNDNPCNLPGTRDMSHVSGGRMTSVAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-