Bros001077.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- ken
- Assembly
- GCA_032445375.1
- Location
- CM063640.1:12853049-12867786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.04 11 9.2 2.1 1 23 171 192 171 192 0.98 2 13 7.6e-08 2.1e-05 27.2 2.1 1 23 198 221 198 221 0.97 3 13 0.0014 0.37 13.8 1.5 1 23 227 249 227 249 0.96 4 13 0.00061 0.17 14.9 3.4 2 20 256 274 255 277 0.89 5 13 0.14 38 7.4 4.1 3 23 285 305 284 305 0.92 6 13 2.9e-05 0.008 19.0 1.3 1 23 548 571 548 571 0.97 7 13 0.00042 0.11 15.4 4.3 1 23 720 742 720 742 0.98 8 13 2.2e-05 0.0059 19.4 1.0 1 23 748 771 748 771 0.96 9 13 0.0017 0.45 13.5 0.5 1 23 777 799 777 799 0.97 10 13 0.00032 0.086 15.8 4.5 2 23 806 827 805 827 0.94 11 13 0.0058 1.6 11.8 0.4 1 23 833 855 833 855 0.95 12 13 0.00039 0.1 15.5 2.5 1 23 861 883 861 883 0.95 13 13 3.5e-07 9.5e-05 25.1 2.6 1 23 889 911 889 911 0.98
Sequence Information
- Coding Sequence
- ATGTATAAGGTGGCCATAATTTGTAGGGAGACATTTCACCTGATCAACACTTTATCTTGCAGGTGGTCAGCATCTCCGACCTGCGCACAAGACAACATTAAACTGGAGTATCCCACCGTAGATGCTGACACACTGTCCCGTAAGGTAGCTTGTGGTCTGAAGCACGGCGCAATGTCTCCCGCTTGCGTTTCTGTGCAGCGGCACACACGGTACGTGCGTCAGAGCCGGTCTGCCGCGGTGGTCAAGCCGGAGTTGAACTTCTACACTAGCTCTTGCGCTGGGGTGGTGGCTGCAGACCAGTATGTGCTGAAACAAGAGAAAGATTCTCAGGGTGGTCTGGACGTAGAACACGGAGAGTTGACCGATGTGTCGAGTCCCCTGGCAGCGAAGGAATCTAAGAGGGGTTGGCACAAGCGAGAACTCAAACTCTTGTTCGGCGCGATGGACGGACGGCACGCCGACGTTTGCGACGTGGACTCCAGCAAGGTAGTGGTTGACGGCAGAACGTTGTACCGCTGTTTCGAGTGCGGCAAACACTTGGGACGGTCCACGTTTGCCAGCCACTTGCGCATTCACACCGGCGAGAAACCGTTCACGTGCCACGTGTGCGGGAAACAGTTCCGCACCTCGAGCTTGCTGAACCGCCACATCCGCGAAGTGCACGAGGGCGTTAAGGAACATCCGTGCGACGTTTGTGGCAGAAGGTTTGCGTCCAAGAAATCCAGGAACGAACATCGTGTCACGCACACGGGCGAAAGGCAGTGCGTGTGCCACTTGTGCGGCAAAGCATTCAAAACCAAAGCGTCGCTCTTCGTGCACAACGTCTTCCATTCGGATAACTTCCCGCACGGGTGCCTGCATTGCAGCCAGCGATTTCGAAGACGCCAGCAGTTGAACGACCACGAAGGTCACCACGTGACCTGGTCCCAAGCCTACCTCTGGCGAGTGCTAGCCGTGCGAAGGCTGGCCTCTCGGAGGCAGGCAGCGTCGGTAGTGGTcgcaggggagggaggggtcacTGCATCGCAGGGGTCCCGCGCGGCATTGAAAATTATTCGTTCAACACCGTTAGATGCACGAGAGATCCGCAAACACGCAACCTCTAACGAGGCAGAGAACTATGACCCTAGCGGAGACTCCGAAGATGAAGATGGTGACTTTGAAGGCAGCTGGGAAGGCTCAAACTCAGATTTCGAAAGCAGTTCTGTCTGGCCTCCCAACATTCATTCCTACTGCAAGGTCGAGATTTCGGAGGGACTGGATCCGCTCGCAGAAGACGATCGGGCGCTCCTCGACCGCTGGGAGGTCGAGCAGCTGAAGATGCCGAACGGTCGCTCAAAGCCCCGTGCTCGAGCCAAGCCACATATCATTGAATTGGAGTCCTATGACGACCCGTTTGAAACCAAAGATAGCGACACAAACACATTTGTTTGCCATGTCTGTGGTGTTAACATTGCCGGAGATGTCGAGGACGTCGACGAACATTTAAAATCTCACGATCAACCGAGAGAAAATGACGATATTGGTGGAATTGAACTGTACGGTGATGATGAAAATTTTGACAGGGATGTAGATGTTGACTCATCGGTAGAAGAACTTGATAGTAGTCTTGATGATTCTGATGTCAAAGAAATTACAGAGTTCTATTGTGAAGTTTGCGGGGAGTGCTTTGAAAATAATGGTGATCTGACATTGCACAAGAAAAGAGATCATGATGCTCCCAGCCCACGAGTAATCAGTGTTAACCACCAGGGTAGCTTGCGAGTACGAGGCGATGTGGGAGAGGCTGTGCCAGAGCTGTGGACGCGAGCAGTAATGACCGCACGATTTGCTTGCAGGTGGCCGGCGACTCTGTCAGAAACACCGCAGCCAAAGGAGGAATATTTCCCTCACTCGGTCCTCATCAAGTCGGAGGTTTCGTTCGCCGAGGACGATTGTCCCATGTGCCCGCAGTGCTGTGCGACGATGGTGTCCAACGGTGAACTTGCCACCCACCTGTTGGCCATCCACTCGAACGTGGCCTACCACTGTTACGGCGACGCCCCGTCGGTGGACGAAGACGGAGACAGCAGTTACATGTCGAGGCACACCCGGGCGCCGGGAAGCTCCGTCGTGGACGGGAACGAGGCCAGAGTCACGGTGGGCCGGCGGTCGCCGCACCGCTGCGACCAGTGCAGCCGACACTACCCGTCGAGGTACCTGCTGGAGCGCCACCTGCGCGTGCACACGGGCGAGAAGCCCTTCACCTGCCACGTGTGCGGCAAGCAGTTCCGCATCGCGGTGCAGCTGAGCCGGCACCTGCGCGACGTGCACGAGGGCGTCAAGAACCACCCGTGCGACATCTGCGGGCGCCGGTTCGCCAGCGCCCAGTCGCGGGACGACCACCGGCGCGTGCACACGGGCGAGCGGCCATGCGTGTGCCACCTGTGCGGCAAGGCGTTCAAGACGAAGGCATCGCTGTTCGTGCACAGCAAGTTCCACGCGGACGTGTTCCCGCACGAGTGCGCGCGCTGCGGCCGTGCGTTCCGAATGCGCCAGCAGCTGGACGTTCACGTGCTGCTGCACACGGGGGAGAAGCCCCACGCCTGCCGCTTCTGCGGGAAGAGCTTCCGGCTGAGCAAGACGCTGAAGGACCACCTGCTCATCCACACCAACCGCAACACCTACGAGTGCCCCCAGTGCGGGAAGCACTTCTCCCAGCAGCGGTACTTGAAGAACCACCTCAGAGCCCACAAGAGGTCGGGCCTCTCCTCGAGGAACGACGCTCCAGAATAG
- Protein Sequence
- MYKVAIICRETFHLINTLSCRWSASPTCAQDNIKLEYPTVDADTLSRKVACGLKHGAMSPACVSVQRHTRYVRQSRSAAVVKPELNFYTSSCAGVVAADQYVLKQEKDSQGGLDVEHGELTDVSSPLAAKESKRGWHKRELKLLFGAMDGRHADVCDVDSSKVVVDGRTLYRCFECGKHLGRSTFASHLRIHTGEKPFTCHVCGKQFRTSSLLNRHIREVHEGVKEHPCDVCGRRFASKKSRNEHRVTHTGERQCVCHLCGKAFKTKASLFVHNVFHSDNFPHGCLHCSQRFRRRQQLNDHEGHHVTWSQAYLWRVLAVRRLASRRQAASVVVAGEGGVTASQGSRAALKIIRSTPLDAREIRKHATSNEAENYDPSGDSEDEDGDFEGSWEGSNSDFESSSVWPPNIHSYCKVEISEGLDPLAEDDRALLDRWEVEQLKMPNGRSKPRARAKPHIIELESYDDPFETKDSDTNTFVCHVCGVNIAGDVEDVDEHLKSHDQPRENDDIGGIELYGDDENFDRDVDVDSSVEELDSSLDDSDVKEITEFYCEVCGECFENNGDLTLHKKRDHDAPSPRVISVNHQGSLRVRGDVGEAVPELWTRAVMTARFACRWPATLSETPQPKEEYFPHSVLIKSEVSFAEDDCPMCPQCCATMVSNGELATHLLAIHSNVAYHCYGDAPSVDEDGDSSYMSRHTRAPGSSVVDGNEARVTVGRRSPHRCDQCSRHYPSRYLLERHLRVHTGEKPFTCHVCGKQFRIAVQLSRHLRDVHEGVKNHPCDICGRRFASAQSRDDHRRVHTGERPCVCHLCGKAFKTKASLFVHSKFHADVFPHECARCGRAFRMRQQLDVHVLLHTGEKPHACRFCGKSFRLSKTLKDHLLIHTNRNTYECPQCGKHFSQQRYLKNHLRAHKRSGLSSRNDAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -