Bros057070.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- lola
- Assembly
- GCA_032445375.1
- Location
- CM063645.1:62986353-63012303[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.099 27 7.9 1.6 1 21 71 91 71 92 0.96 2 13 0.00065 0.18 14.8 0.7 3 19 102 118 100 120 0.96 3 13 3e-05 0.0082 19.0 0.9 1 21 164 184 164 185 0.95 4 13 0.0034 0.92 12.5 2.1 3 23 195 216 193 216 0.97 5 13 1.7e-05 0.0047 19.8 0.9 1 21 244 264 244 265 0.97 6 13 0.0026 0.7 12.9 3.7 1 23 273 296 273 296 0.96 7 13 3.1e-05 0.0085 18.9 2.4 1 21 469 489 469 490 0.96 8 13 4.5e-06 0.0012 21.6 0.3 1 23 498 521 498 521 0.96 9 13 0.00037 0.099 15.6 2.8 1 21 584 604 584 605 0.95 10 13 1.3e-06 0.00037 23.2 0.8 3 23 615 636 613 636 0.97 11 13 0.0007 0.19 14.7 1.7 1 21 735 755 735 756 0.96 12 13 0.00016 0.042 16.7 0.7 1 21 835 855 835 856 0.96 13 13 0.0042 1.1 12.2 4.4 1 23 864 887 864 887 0.94
Sequence Information
- Coding Sequence
- ATGTTTGCGGTGCCCCTATCTTGTAGATGTGTGTTACTAGTCTTATTGTGTAGCTATCGGAACTACGTTCTCTCATCCTACCGTCTCGAGCTACTCGGACCGGCCGGGATCCCGCTCTGGGAGAACATCCTCAGGGCGGAGGGCCTGGACGGCTCCCTGTTCCTCCGGGGGCGCCGGCAGAGTGCCGCGGAGGGCTCCGGCGCTGGCCCGTTCGTCTGCCCCGGCTGCAGCAGGGTGTACCTGCACAAGTGCAGCCTGGGCAAGCACCAGCGTCTCGAGTGCGGCAAGGCGCCCCAGTTCGGCTGCCCCCGCTGCCCCCGCAAGTTCACCCAGAAGCAGAGCCTCAAGAGGCATGCATTTGACGCTCCGCTGTTGTCCACTCCAGAGCAGGCGGGCGTCACGCTCAGGAAGACAGTCTCGAGGCGAGCGGTGTTCTCGACGAGACGGCGGCCGGGCCGGGCCCGGGACGGGACGCCCGGGGGCTGCGACTTCGCCTGCCGCGACTGCGGGAAGACCTACTCCCTCAAGAAGAGCCTGCAGAAGCATCAGCGGCTCGAGTGCGGCAAGGAGCCGCAGTTCGGCTGCCCCTTCTGCCCGCTGAGGCTCACGCAGAAGCACAGCCTCAAGAGACACGTCCAGAGACAGCACGCCGTCTTCGACACACTCCCACGCTTGGTGAAGGTGGCGTTGCCGTGCGATGCCCGGGGGGAGCCGTCCGCCGGGACGGTCTTCAGCTGCCCCAACTGCCCGAAGACGTACAGCTACAAGAACAGCTTGCAGCTGCACATGCGCTTCAAGTGCGGCAAGGAGCCTCAGTTCTGCTGCCCGTACTGCCGGCTCAGGTACACCGAGCAGAAGAGTCTCAGGCGGCACGTCCTGAGGATGCACTCGGCGGAAGGCCAGTTCCCAGCGGTCTTCGTCTCTCCGGGCCGCTCAAGTGCCTGCTCTTGCATGAAGAGCTGCCGAAGCAACTGCGCATCAAGTGTGGTGAGGAACAGCGGTTCGGCTACCTTCACTTTCGTGTCGTGTGAAGTTCACGGACTGAGCCTCGAGGCACGTACTGAGGCAGCACGCTCATGCGAGCAGTGCATCCGTGTCTCGCTCGACGTTGCCACGATCTACTGTGCTTTTTCCATGTGTCTGCCATTGATGCACTTGCGTCTCGAGCGCGTCAGGGGGGCCCAGTTCCGCTGCCCCTTGCTGCCGGCTGAGGTTCACGCAGCTGCCGAGCCTCGTGAGGCACGCTCCCGTCGTCAGACTGTTTCCGTGAGCAGCGCGTCGTTTATAAACGTGCCGTGCCACATCTCGTGCTGCCACATGCAAGAGTACGAGATCACAAGGCGTTCGACGCTGCTGGCCGACAGTGGCCAAGGGCAGTTGGTGGATGCGTTCGGCAGGGCCGTCTTCATTTGCCCCGACTGCCCCAAGACCTACTTCCACAAGAACAACTTGCGGAAGCACCGGCGGTTCGAGTGCGGCAAGGAGCCCCAGTTCGCCTGCCCCGTCTGCGCCAGGCGGTTCTCCCAGAAGGCGAACCTCAAGAGGCACGTGCAGATACAGCACGCTCCTTTCGGCACGCTTCCAGCGGACGTGTTACTGTACGTAGTTAAGATGCTGGTCGTGTCTGTTTCAGAGCTAGAGGAGATTGCGTTCTTGGAGAGTGTTCCCGGTCGGGAAAGACACTTGAGGAAACGGCAGTCGCGCGAGGTTTTCCCTTGGGAGGCGCCGGAGGCTTCGGGCCAGGCCGTCTTCGCCTGCCCCAGCTGCCCCAAGACGTACACGTACAAGCACACGCTGCGCTACCACATGCGGCACGAGTGCGGCAAGACCCCGCAGTTCGGCTGCCCCGTCTGCGGCCAGACGTTCACGCAGAAGCAGAGCCTGAACAGGCACGTCCGGAAGCAGCATGCTCCCGCAGAGCTGTTCCAGGGCACATCCCGGGCAGCAGGTAACCTATTGGGGGTCCCTGCAGCCTGCGGCTGGTTTGTTGTGGAGCCTACTGCCCGGGACGACAACCAGCAAGCAGGAACACAATCCTCCTGCAAGCCCTCAGCTGTGCTGTTTCTCAGCGGAGAGGCTGGGTTTGACCCCTGGACCGACGCAGACTCGTCGAGGAGAGGATTGTTCCCTCTGGGGAGCCAGCGGTCGAAGTTCCCGTGGGAGGCCCAGGAAGAGGCCCCGGAAGAGTCGAGCCCAGGGGCCTTCCCCTGCCCACACTGCTACAAGCTGTACAGCTACAAGTCGAACCTGGGCAAGCACTTGCGCTTCGAGTGCGGCAAGGACCCTCAGTTCAAGTGCCCCGCCTGCCCGCGGCGCGCGTGGACCTGGCGACACGTGCTGTTACCGTGCGCTCGAATCCCGTCCTGCCTGCTGGACCGAAGTTCATCGCGGCCCGGTCTGTGGGCGGGCGACAACAGTACTGTCCGGCGGCGTGTGTGCGGGCCTAAAATATTTGACTTGTTCGGCGCGTGGCCGGACTCGGAGGCGCCGCCGACGCGGAGGTTCCAGTGCCCCAACTGCAGGAGCGCGTACAGCCGGCGCTCCAACCTCTCCCGCCACGTGAGGTACGAGTGCGGGCAGGAGGGCCGGTTCAAGTGCCCGCTGTGCCCGCACCGCTCCGCACGCCACAACAACCTGCAGAGGCACATCCACGCGCGGCACCTGGCCGCCTGCCTCGGCGCCGCGCCGTGA
- Protein Sequence
- MFAVPLSCRCVLLVLLCSYRNYVLSSYRLELLGPAGIPLWENILRAEGLDGSLFLRGRRQSAAEGSGAGPFVCPGCSRVYLHKCSLGKHQRLECGKAPQFGCPRCPRKFTQKQSLKRHAFDAPLLSTPEQAGVTLRKTVSRRAVFSTRRRPGRARDGTPGGCDFACRDCGKTYSLKKSLQKHQRLECGKEPQFGCPFCPLRLTQKHSLKRHVQRQHAVFDTLPRLVKVALPCDARGEPSAGTVFSCPNCPKTYSYKNSLQLHMRFKCGKEPQFCCPYCRLRYTEQKSLRRHVLRMHSAEGQFPAVFVSPGRSSACSCMKSCRSNCASSVVRNSGSATFTFVSCEVHGLSLEARTEAARSCEQCIRVSLDVATIYCAFSMCLPLMHLRLERVRGAQFRCPLLPAEVHAAAEPREARSRRQTVSVSSASFINVPCHISCCHMQEYEITRRSTLLADSGQGQLVDAFGRAVFICPDCPKTYFHKNNLRKHRRFECGKEPQFACPVCARRFSQKANLKRHVQIQHAPFGTLPADVLLYVVKMLVVSVSELEEIAFLESVPGRERHLRKRQSREVFPWEAPEASGQAVFACPSCPKTYTYKHTLRYHMRHECGKTPQFGCPVCGQTFTQKQSLNRHVRKQHAPAELFQGTSRAAGNLLGVPAACGWFVVEPTARDDNQQAGTQSSCKPSAVLFLSGEAGFDPWTDADSSRRGLFPLGSQRSKFPWEAQEEAPEESSPGAFPCPHCYKLYSYKSNLGKHLRFECGKDPQFKCPACPRRAWTWRHVLLPCARIPSCLLDRSSSRPGLWAGDNSTVRRRVCGPKIFDLFGAWPDSEAPPTRRFQCPNCRSAYSRRSNLSRHVRYECGQEGRFKCPLCPHRSARHNNLQRHIHARHLAACLGAAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -