Bros054968.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- CM063645.1:34018220-34034782[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.7 1.8e+03 2.2 0.2 3 23 410 430 409 430 0.93 2 16 0.013 3.5 10.7 4.5 1 19 436 454 436 458 0.95 3 16 0.026 7.1 9.8 0.1 2 21 469 488 468 489 0.93 4 16 0.00024 0.066 16.1 0.4 1 23 492 514 492 514 0.94 5 16 3.5e-05 0.0096 18.8 0.4 2 23 521 543 520 543 0.95 6 16 0.00016 0.045 16.7 0.9 1 23 549 571 549 571 0.98 7 16 0.0053 1.4 11.9 0.8 1 23 577 599 577 599 0.98 8 16 6.5e-06 0.0018 21.1 5.4 1 23 605 627 605 627 0.98 9 16 1.7 4.6e+02 4.0 1.1 1 23 639 663 639 663 0.93 10 16 4.9e-06 0.0013 21.5 1.2 1 23 680 702 680 702 0.99 11 16 4.3e-05 0.012 18.5 0.9 1 23 708 730 708 730 0.98 12 16 4.3e-05 0.012 18.5 0.8 3 23 738 758 737 758 0.98 13 16 0.0037 1 12.4 1.9 1 23 764 786 764 786 0.97 14 16 0.00052 0.14 15.1 1.5 1 20 792 811 792 814 0.94 15 16 2e-07 5.4e-05 25.9 1.0 1 23 820 842 820 842 0.98 16 16 8.6e-05 0.023 17.6 4.7 1 23 848 870 848 870 0.96
Sequence Information
- Coding Sequence
- ATGTTCACTGGGCGACTACGCCACACCCATCTGCGACACATCAGGGGCGGCGTGGGACGCGGGGGAGGGGAAGGGATGAGCCGTCGCGCGCCGCGCCGCAGCGTGGAGGGAAAGTTAGTTGAGACCAGGCCGGCACGAGGAGTGGTCGCgtcactgaggagtcgtgcctcgagacaTCGCTGGGCATTAGGAGTTGTTGCAAGGCAGGCGCGAGGAGCGGTCACGTCACgagaggagtcgtgcctcgagacggtcgctGAGCTACTGTCGCAGGCGGGGATGGGACAGCCCCATGTACAGGGCCTTGTATCAATAAATCGGGTGTTCGTCGCGGACTGGTGGATATTAATTCTACATCTTAGCTTGTCCCTCCCTGGCCACACTGGCCGAAGCCCACTCTACCTAGTACATCTGAGCAGCCGGGCGTTGAGCGACGAGGAAGGGCGGGCGGAGCGACGACAACCTGAGAAGACATCTTCATATTCAAGAACCAGAAACATGTCAGTGCACGAAGATGCTGCAGATGAGAGTGACTCGCTCGTACAGCACGTGGTGATCGCTCAAAGTAAGACCGGCACAGTTCTCAGCTCTGGTAGCAGTGAGAGAACAACGAAAGAGCAGTCACTCAGCCACGGGGAGTTCGGCCGAAAAGACCCAGGACCGAGTCTCCACCCAGGGCGGTTGTGCCGCCTGTGtgccaggagaatggacagcATGGTGTACATATTCGGCAAGATCGGGCAGGCACACGGCATTGTCGAGAAGATCAACACCTCGCTGCCGGTCACGGTGCGCTGTGACGACGCGCTGCCGAAGCAGCTGTGTGAGGACTGTGTGCAGAAGCTGGACATCTGCCACGAGTTCGCCGAGGCGTGCGTCCGGGCAGAGCAAAAACTGAAGGCTCTCAGCAAGGCGCAACTGTTCATATCAGACGTAGTTGGGGAACGCAAGTATCTGACGGAAAATGTCACCAATGTCCCTGAGACGGGGAAGTTTGGCTGCCCGTTGTGCTGCTGTGGCCTCATGCTGGTGGAGGACTCAGATGCGCTGCAGTATTCTTCTTGCAGTTCTGCCAGCCACGAGCCTGTTCTAGTGACCAGCCACGAGCCTGTTCGAGTGACCAGTCCTCTGAGGCTCACCGTGGCGGACGTCTCCACCGGAGGTACTTACAGAGGGACGAGAGAAGTGCAAAAAGTCTACAATGAAGAAAAACCTTCGTCAGCAGCATGTCGAATATGTGGGGACATTTTTGACAGCTCGGAAGAATGCTTGGCTCACGCGAAGGTTCACTCCTTGGATGATTTTTTCCCGTGCAGTGTGTGCGACTTGTGTTTTTCCACCGAGTCGAGCTTCTCGCGCCACTGTGTCGAGCACCGTAGAAAGTGCTCATCTCCAGATGAGCTGCGCTGCCCGAGATGCGGCAGCGTGTTCGGCAACGCCAGGGCGATGGCCCGCCACATCTGCCGGCTGCTGTTCCGCTGCCCCGACTGCGGCAAGGCATTCCGCTCGGAGGCGCGCCTGGCGTTCCACCGGCGGCTGCACGGGGGGGCGAGCGCCACCACCTGCCGCCAGTGCGGCAAGGTGTTCGCTCGCGAGAACAACCTCTTCGAGCACGTGCGGCTGGTTCACCTGGGGGAGAAGGCGCACCGCTGCCCGCGTTGTGGGAAGACGTTCCAGCTGCGCGCGAGGCTGGTGGCACATCTGCGCGTGCACGCGGGGGAGCGGCCGTTCAGGTGCCGCGTGTGCGGGGGCAGGTTCCACGACAGTGCCACGCTGAAGGGCCACCTTGTCACGCACCTGGACGCCAAGCCCTTCCAGTGCGACAAGTGTGGTCGCTGCTTCTCGAGGAAAACTCTCTTCAAGCGCCATGTGCTCTCACACAACAACGATGCCAACCCTCCGTTGAGCAGGATGCACAAATGCAAGCTGTGCCCTGATCTAACGCTAGCGTCATACTCGAAACTTGTGAAACACAGGAAGGAAGCTCATCTTGCCGATACGTTCCTGGATCAGAATGAACGGCTGGGCACCAAACCTTTCACGTGTGAATACTGCGAGAAGTCGTTCGTGTATCGAGTGACGCTGATGTCGCACGTGCGCACGCACACCGGGGAGTTGCCGTTCGAGTGCGAGCTCTGCGAGAAGCGGTTCCCCCGGAAGCGCTCGCTCGACCTGCACAGGCGCGTTCACTCGGGCGACAGGCCGCACGGCTGCGCGACGTGTGGCAAGCGCTTCGCTCAGAGAGCACACCTGCGCGCCCACGAGCGCCTGCACACGGGGGAGAAGCCGTACGCTTGCGACGAGTGCGGCCGGAGGTTCCGTCTGAAGGAGGTCAGGAACGCGCACCACCGCAAGCACACCGGCGAGCGGCCCTTCAAGTGCGCCGTCTGCGAGAAGGCGTTCCGCACGTCCCACTCGTACAGCCAGCACATGTGGATCCACCAGGGCAAGAGGCCGTACGCGTGCCAGCACTGCGGGAAGGCCTTCCGGCGTTCCAACGGCCTCAAGGTACACATACGCATCCACACTGGCGAGAAACCCCACATGTGCGATGTCTGTGGAAAGTGTTTTGCCCAGAAGCAGGACATGAAAAAGCATAGGAATCTTCACGCAAATGGGAGACTGTAG
- Protein Sequence
- MFTGRLRHTHLRHIRGGVGRGGGEGMSRRAPRRSVEGKLVETRPARGVVASLRSRASRHRWALGVVARQARGAVTSREESCLETVAELLSQAGMGQPHVQGLVSINRVFVADWWILILHLSLSLPGHTGRSPLYLVHLSSRALSDEEGRAERRQPEKTSSYSRTRNMSVHEDAADESDSLVQHVVIAQSKTGTVLSSGSSERTTKEQSLSHGEFGRKDPGPSLHPGRLCRLCARRMDSMVYIFGKIGQAHGIVEKINTSLPVTVRCDDALPKQLCEDCVQKLDICHEFAEACVRAEQKLKALSKAQLFISDVVGERKYLTENVTNVPETGKFGCPLCCCGLMLVEDSDALQYSSCSSASHEPVLVTSHEPVRVTSPLRLTVADVSTGGTYRGTREVQKVYNEEKPSSAACRICGDIFDSSEECLAHAKVHSLDDFFPCSVCDLCFSTESSFSRHCVEHRRKCSSPDELRCPRCGSVFGNARAMARHICRLLFRCPDCGKAFRSEARLAFHRRLHGGASATTCRQCGKVFARENNLFEHVRLVHLGEKAHRCPRCGKTFQLRARLVAHLRVHAGERPFRCRVCGGRFHDSATLKGHLVTHLDAKPFQCDKCGRCFSRKTLFKRHVLSHNNDANPPLSRMHKCKLCPDLTLASYSKLVKHRKEAHLADTFLDQNERLGTKPFTCEYCEKSFVYRVTLMSHVRTHTGELPFECELCEKRFPRKRSLDLHRRVHSGDRPHGCATCGKRFAQRAHLRAHERLHTGEKPYACDECGRRFRLKEVRNAHHRKHTGERPFKCAVCEKAFRTSHSYSQHMWIHQGKRPYACQHCGKAFRRSNGLKVHIRIHTGEKPHMCDVCGKCFAQKQDMKKHRNLHANGRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -