Bros000720.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- CM063640.1:8280004-8285121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00014 0.038 16.9 1.5 1 23 115 137 115 137 0.94 2 12 2.1e-05 0.0058 19.5 1.7 1 23 143 165 143 165 0.98 3 12 0.00026 0.071 16.0 2.2 1 23 187 209 187 209 0.93 4 12 1.3e-05 0.0037 20.1 0.4 1 23 215 237 215 237 0.98 5 12 0.0035 0.95 12.5 0.7 2 23 259 280 258 280 0.96 6 12 1.2e-05 0.0032 20.3 0.5 3 23 290 310 288 310 0.94 7 12 0.00011 0.029 17.3 0.1 1 23 316 338 316 338 0.96 8 12 2.2e-06 0.00059 22.6 0.1 1 23 344 366 344 366 0.96 9 12 2.4e-05 0.0066 19.3 4.2 1 23 372 394 372 394 0.98 10 12 1.7e-05 0.0047 19.8 0.1 1 23 400 422 400 422 0.97 11 12 0.00056 0.15 15.0 3.5 1 23 428 450 428 450 0.95 12 12 6.9e-05 0.019 17.9 3.4 1 23 456 478 456 478 0.98
Sequence Information
- Coding Sequence
- ATGTCTCAGGGTGTTGAAGTCAAAGAAGAGGATGGATTAAGTAACAATCAACATAATTCTCCTCCAGATTTGAAGCCAAAGACTGCTGAGGAAAAATCGCAAATCTCCATTGATTTGGGAAAGGCACAGCTTTTTTGTGAAGTAAACATAGTAGAAAATGAGAACGCGGGTTCAGCGAACACAGATAATTCAGACGAGCAAGACAGCAGTGAATCGGATGACTCTGCTCACAATCGCGTGGTAACTGAAGACAAGTGTTTGGCAGACAGCACAGCTAAAGATGAAGCGGAGTACACAGAATCTGTTTTAACTCCTCGTCAAAATAATCCGAACAGAAGTTTGTTCTCGTGTAAATTTTGCCCTAAGTCGTTTGCGAAGCGTACGTACCTGAGACAGCACGAAGTGATCCACAGCGATAAGAAACCTCACACGTGTTCCGAGTGCAACAGCAACTTTGCTCGCTCCGGAGGTCTGCTGCGGCACATGAAGACGCATGGTAAAGTCACAAATTCGAACGGTGGTAAGAATGCTGGCGACGCCGACTGCAAGAGCAAGACGTTCAGTTGCGAGGTGTGCTCGAAAGTGTTCACGAAACACGTGTACCTGAAGCGACACTCGGTGATCCACAGCGACGAGCGCCCGTACGCGTGCCAGATGTGCGGCAGCACGTTCTCTCGCACGGGCGACCTCGGCAAGCACTTGCGGACGCACGCCGAGGACCGCGAGGGGGAGCGTGAACGGGTGGCGAGCGCGGGCGACGGGGACTCCTCGCTGGAGTGCACGGTGTGCTACAGGGCGTTCACGAAGGAGCTGTACCTGAGGCAGCACCGGGTGACGCACGTGCGCAAGGAGGCCAGCTCCCACCTCTGCGACGAGTGCGGCAAGGCGTTCAAGCAGCGCGGGGCGCTGACCCAGCACAAGGCCGTGCACTCGGCCGTCAAGTCCCACGTCTGCGCCGTGTGTGGCAAGGCCTTCGCGACGCCGGGCCGCCTGCGGGACCACGCCAAGCTGCACGCCGGCGTCCGGCCCTTCCTGTGCAACGTCTGCGGGAAGGCGTTCGCCTCCAAGGACGGGCTGCTGGCCCACGAGCGCACGCACACGGGGGAGAAGCCGTACTCGTGCGCACTGTGCCAGCGGTCGTTCACCACCTCGTCCAACTACAGGACGCACGTGCGGCACCACACTGAGGGCAAGCGCTACCCGTGCGACCTGTGTGGCGCGGCCTTCTTCACCAAGTCCGGCCTGGAGCGCCACCAGAGCCTGCACACGGGCGTGAAGCCCTTCCCCTGCGACATCTGCACCGTTTGTTTCTACACCAAGCGAGAACTCAACAGGCACAAACTGTTTCATCTGGGAAACAAGAAGTTCTCGTGCGATCAGTGTAACAAGTCCTACTACGAACGACAGCATCTCGTCATTCACCAGCGAACCCACACGGGTGAGCGGCCGTTCACATGCACCTGGCAGCAACACATGGCACAGACCGGAACTCCGACCCAGGGCCTCGGGAACATGAATCCGGTGCGTCGCGGTTGTGCTTCTTTGGTCCTTTTAAACCAGCACATTCGGGAGCAGGCCACGCCGGATTAG
- Protein Sequence
- MSQGVEVKEEDGLSNNQHNSPPDLKPKTAEEKSQISIDLGKAQLFCEVNIVENENAGSANTDNSDEQDSSESDDSAHNRVVTEDKCLADSTAKDEAEYTESVLTPRQNNPNRSLFSCKFCPKSFAKRTYLRQHEVIHSDKKPHTCSECNSNFARSGGLLRHMKTHGKVTNSNGGKNAGDADCKSKTFSCEVCSKVFTKHVYLKRHSVIHSDERPYACQMCGSTFSRTGDLGKHLRTHAEDREGERERVASAGDGDSSLECTVCYRAFTKELYLRQHRVTHVRKEASSHLCDECGKAFKQRGALTQHKAVHSAVKSHVCAVCGKAFATPGRLRDHAKLHAGVRPFLCNVCGKAFASKDGLLAHERTHTGEKPYSCALCQRSFTTSSNYRTHVRHHTEGKRYPCDLCGAAFFTKSGLERHQSLHTGVKPFPCDICTVCFYTKRELNRHKLFHLGNKKFSCDQCNKSYYERQHLVIHQRTHTGERPFTCTWQQHMAQTGTPTQGLGNMNPVRRGCASLVLLNQHIREQATPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -