Bros100344.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- JASMSR010000011.1:14088361-14094380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.29 14.1 1.4 1 23 21 43 21 43 0.95 2 13 0.00078 0.21 14.5 1.0 2 23 50 71 49 71 0.96 3 13 1.3e-06 0.00037 23.2 0.4 1 23 77 99 77 99 0.94 4 13 0.014 3.8 10.6 3.4 3 23 110 129 109 129 0.97 5 13 4.6e-07 0.00012 24.7 0.4 1 23 134 156 134 156 0.98 6 13 1.1e-06 0.00029 23.6 2.5 1 23 162 184 162 184 0.96 7 13 1.6e-08 4.3e-06 29.3 1.2 1 23 190 212 190 212 0.98 8 13 6.9 1.9e+03 2.1 0.3 1 11 218 228 218 237 0.79 9 13 1.8e-07 5e-05 26.0 2.2 1 23 243 265 243 265 0.98 10 13 2e-05 0.0053 19.6 0.2 1 23 270 292 270 292 0.99 11 13 1.5e-06 0.00042 23.1 4.4 1 23 298 320 298 320 0.97 12 13 1.3e-06 0.00037 23.2 5.1 1 23 326 348 326 348 0.98 13 13 0.043 12 9.1 1.9 1 23 354 376 354 377 0.93
Sequence Information
- Coding Sequence
- ATGTTCACTTCTTACGCCAAGCTTTACACGCACAGGATCATTCACCGTAAAAGTAAAGATCACACGTGCGATGTTTGCGGGTTGTCTTTCTACTACAAAACGCTTCTCGACAACCATAAAATACTGCATTCGAAACAGTTCAAATTATACTGTGAAGTCTGTAACAAGGGATTTCGGGCCAAGTGTTTGTTAGAGGAGCACAGGAACGTCCACTCGGGCAAGCGGCCGTTCCAGTGCGATGTGTGCGGCAAGTCGTTCGCGATGAAGAGTAACCTGGCCAACCACAAGGTGCAGCACAGGCCGGGCTACGCCCCGTCCCGACGCCTGTGCGAGACGTGCGGCAAGACCGTGAAGCGCACCCACTACCTGAACCACATGCGCAGGCACAGGAACGAAACCTACCAGTGCGACGTGTGCGGCAAGTCCGTCACCTCGAAGAGCTCGCTCCGGACGCACGTGAAGGCCCACTCGGACGACAAGCCGTACCTCTGCGACTTCTGCGACAAGAGGTTCACCAGCAGCAGCTACCTGAGGCAGCACCGCCGCGTGCACACGGGCGAGAAGCCGTACGAGTGCCAGCAGTGCGGGAAGAGCTTCTCGCAGCGCTCCACGCTCACCATTCACATCAGGAACCACACCGGGGAGAAGCCGTATTCCTGCGAGCTGTGCGCAAAGGATTTTGCGGAGTTCGAGGAGCACAAGGTGGTTCACACGGGTCTGAGGCCCCACCAGTGCGACGTCTGCGGGAAGACCTTCAGCAAGCGAGGCTACCTCTCGGCACACATGCGCTACCACAACGCCACGACGTACGTGTGCGACGTTTGCGGCAAGGCCATCGCGAAGAAGAACTCGCTGATGACGCACCTGCGCAAGCACGCGGGGGACAAGCCCCACGTGTGCGACTACTGCGGGAAGGGGTTCTGCTCGTCCAGCTACTTGAAGCTGCACCGCCGCGTCCACACGGGCGAGAAGCCGCACCGCTGCCTGCACTGCGGCAAGAGCTTCTCGCAGCGCTCCACGCTCACCATCCACGTGCGGAACCACACGGGCGAGAAGCCCTTCGCCTGCGACGTGTGCGGCAGAGCGTTCGTCTGCGGCAACCAGCTCAACAACCACAAGAAGGCCCACCACAGGTCGTTCGCGGAGGGAGTCGTCTGA
- Protein Sequence
- MFTSYAKLYTHRIIHRKSKDHTCDVCGLSFYYKTLLDNHKILHSKQFKLYCEVCNKGFRAKCLLEEHRNVHSGKRPFQCDVCGKSFAMKSNLANHKVQHRPGYAPSRRLCETCGKTVKRTHYLNHMRRHRNETYQCDVCGKSVTSKSSLRTHVKAHSDDKPYLCDFCDKRFTSSSYLRQHRRVHTGEKPYECQQCGKSFSQRSTLTIHIRNHTGEKPYSCELCAKDFAEFEEHKVVHTGLRPHQCDVCGKTFSKRGYLSAHMRYHNATTYVCDVCGKAIAKKNSLMTHLRKHAGDKPHVCDYCGKGFCSSSYLKLHRRVHTGEKPHRCLHCGKSFSQRSTLTIHVRNHTGEKPFACDVCGRAFVCGNQLNNHKKAHHRSFAEGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -