Bros100350.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- JASMSR010000011.1:14172313-14190575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 3.4e-05 0.0092 18.8 1.5 1 23 10 32 10 32 0.96 2 35 0.00021 0.057 16.3 0.5 1 23 38 60 38 60 0.98 3 35 0.00028 0.077 15.9 0.2 2 23 67 88 66 88 0.95 4 35 0.033 8.9 9.4 6.1 1 23 94 117 94 117 0.97 5 35 2e-05 0.0053 19.6 1.2 2 23 126 147 125 147 0.97 6 35 1.9e-05 0.0052 19.6 0.5 1 23 153 175 153 175 0.95 7 35 3.1e-07 8.4e-05 25.3 1.9 2 23 182 203 181 203 0.97 8 35 4.8e-06 0.0013 21.5 4.0 1 23 209 231 209 231 0.98 9 35 0.00079 0.22 14.5 1.5 3 23 241 262 239 262 0.94 10 35 0.00011 0.031 17.2 2.7 2 23 273 294 272 294 0.97 11 35 0.00088 0.24 14.4 1.8 1 23 300 322 300 322 0.95 12 35 2.2e-06 0.0006 22.6 2.3 2 23 329 350 329 350 0.97 13 35 1e-05 0.0028 20.5 0.5 1 23 356 378 356 378 0.97 14 35 0.00024 0.066 16.1 5.4 1 23 387 409 385 409 0.97 15 35 0.13 37 7.5 4.1 2 23 416 437 415 437 0.97 16 35 0.00011 0.031 17.2 1.8 1 23 443 465 443 465 0.98 17 35 0.0064 1.7 11.7 0.9 1 23 471 493 471 493 0.98 18 35 0.031 8.3 9.5 0.1 1 23 499 521 499 521 0.92 19 35 7.8e-06 0.0021 20.8 0.6 3 23 529 550 527 550 0.96 20 35 0.00078 0.21 14.5 0.5 1 23 560 582 560 582 0.93 21 35 0.00031 0.085 15.8 0.5 1 23 589 611 589 611 0.95 22 35 0.0072 2 11.5 5.8 1 23 617 639 617 639 0.96 23 35 1.6e-05 0.0044 19.9 0.2 1 23 645 667 645 667 0.97 24 35 1.4 3.8e+02 4.3 0.2 1 13 673 685 673 687 0.91 25 35 0.00023 0.063 16.2 1.2 1 23 709 731 709 731 0.97 26 35 0.016 4.2 10.5 4.0 2 23 738 759 737 759 0.98 27 35 8e-06 0.0022 20.8 1.5 1 23 765 787 765 787 0.98 28 35 0.00093 0.25 14.3 1.3 1 23 793 815 793 815 0.98 29 35 8.5e-05 0.023 17.6 1.1 1 23 821 843 821 843 0.98 30 35 0.00056 0.15 15.0 0.7 1 23 849 872 849 872 0.97 31 35 0.00013 0.035 17.0 2.2 1 23 882 905 882 905 0.91 32 35 2.5e-05 0.0068 19.3 0.1 1 23 912 934 912 934 0.95 33 35 0.00027 0.073 16.0 0.6 1 23 940 962 940 962 0.97 34 35 3.2e-06 0.00087 22.0 0.4 1 23 968 990 968 990 0.97 35 35 0.0014 0.39 13.7 1.8 1 23 996 1018 996 1018 0.99
Sequence Information
- Coding Sequence
- ATGAAGACTCATGCCACGGAAAGACGTCACGCTTGTGAAGTTTGTTTCAAGGCATTCAAGCTGTTGTCGCAATTGAGCAAGCACATGCGGGTACATAGCGGTGAGAAAAAGTACACGTGTAACATGTGCGGGTATTCCACGGCCTATAAAGCGTATCTCGAGATACACGAGAAGAGACACCTGGGCTTCTTCAGGGTCAAGTGCGACATCTGCGGAAAAGGTTTTTTCTCCAACTGGGAGCTGAAGGAACATTCGGCAAAGCACAGCGGGGAAAGGAGCTTCAGGTGCGACCATTGTGACTGTGCCTACTTTTACAAAAACAACCTCGTGCAACACAAGAAAATACGCCATCCTGAGCAAAAAGTGAAACTCAACCAGTGCGACACGTGTGGCAAAGTTTTCGTCCACAGGAAATCGCTGTTGCAGCACATAGCTTCGCACACGGGGGAGAACCTTTTCCTGTGTGACGTGTGTGGCAAATCCGTCACCACGAAGGACTCTTTCAAAGTGCACTGGCGCTCCCACAGCGGGGAGAAGCCCCTGGTGTGCAACGTGTGCGGCAAGGCGTTCAGCAGCCGCTGCAACCTGCGCATTCACCAGCGCACCCACACGGGAGAGCGGCCGTACACTTGCGAGCACTGCGGGAAGACGTTCACCCAGCGCACCACGCTCGTCATCCACAAGCGCTACCACACGGGCGACCGGCCCTACGACTGTCTCTGTGACGTTTGCGGCAAGTCTTTCTCGTACACGCGCTACCTGGCGGCCCACAAGAAGGCAAACCACCCGGACGCACAGAACCCCGCCCGGGTCAACAAGTGCAGCACTTGCGGGAAAGTTTTCGCCCACAAGAAGTCCCTGTCGCTTCACGCGAAATCGCACACGGGGGAGAACATCTTCTTGTGCGATATTTGCGGCAAGGCGCTGACGAACAAGGAGCATCTGAAATTCCACCGGCGCATCCACACGGGGGAGAAGCCCAACGTGTGCGACGTCTGCGGCAAGGCGTTCAGCAAGAGCTGCAACCTGAAGCTGCACCAGCGCACCCACACGGGAGAGCGGCCGTATGCGTGTGACGCTTGCGGCAAGTCCTTCTCGCAGCGCTCCACTCTCGTCATCCACAAACGCTACCACACAGGGCAGAGGCCGTACGAGTGCCACCCATGTCCTGTTTGCAACAAGAAGTTCAGCAGTAAAAGGCAGCAGACGTACCACTTGCGTACTCATGCCGTGCCGATAGCGTTGCAGTGCGAACATTGCGATGCCGTGTGCCTGTCCAAGAAGTATTTAAGAAGCCACCTGCAGAAACACGTCAAAGAGAGACCGTACGTTTGCGACGTCTGCAGCAAGTCTTACAAGCGGCCGTGCGAACTCGTGACGCACAAGAAAATTCACACGGAAGCGAAGAGTTTCGTTTGCTCTCTGTGCGGCTACGCGACCATGTACAGGGCCTCCTTCGCGAAGCACAGGAAGAGACACTTGCGAGACTTCCCGTACAGCTGCGACGTCTGCGGGAAAGGCTTCTTCGAGAAGAGAGCGGCGGAGGTCCACGGGAACTTGCACCTGGGCAGCAAGCCGTATTGGTGCTCCGTGTGCGGCAAGACCTTCTCCCAGGAGAGCAACATGGTGAAGCACCAGAAGCAGCTGCATCCAGCCGCGGGAGACAGCGTGAAGGTGCACGCGTGCGAGCTCTGCGGCAAGACGTTCCCGTACAGGAAGACGTACCTGGCGCACCTGGCCGGCCACAGGGGCGAGAGGCGGGTGTTCCTGTGCGACGTGTGCGGGAAGGGCTTGACGAGCCGCACCTCCCTGCGCCAGCACCGCCTCATGCACGACGGGGACCGCCCGTTCAGCTGCGACAGCTGCGGGAAGAGCTTCAACCGGCGCTGCAGCCTGGTGGTCCACTGCCGCTCGCACACGGGCGAGAAGCCGTATGCGTGCGACGAGTGCGGCAAGCGCTTCGCCCAGAGCAGCCCGCTGGTGATACACAAGCGGTACCACTCGGGCGAGCGGCCCTACACGTGTCTCATTTGCAACACTGGATTCGTGTCCAAGACGGGATCTGCAAGGAAACCGCAGGCTAAGCTCAAGTCCCAGAAAAGAAAGTCGGAACATGCCGGACCTCACGTATGTCCGGTTTGCGACAAGAAATTCAACAGCGAAGCAAACCTGTACTTCCACGTGCGGACTCACACGGTGTCGATAGCAGTGCAGTGCGAgcactgcgacacagtgtgcctGACGGAGAAGCTGCTGAAAAGCCACATGAAGACCCACTCCCAGGAGCGGCCGTTCGTCTGCGACGTGTGCAGCAAGACCTACAAGCGCTCCTACGAGCTGATCAAACACAAGAAGATTCACGCGGGGGTGAAAAATTTCAAGTGTTCGCTGTGCGACTACGTCACGACCTACAAGGCGTACTTGGAGATGCATGAGAAGCGGCACCTGAGGGACTTCAAGCACCGCTGCGACCTGTGCGGCAAGGGCTACTACACGAACACGGCGCTGGAGAACCACAGGAACGTCCACACGGGCCACCGGCCGTACCAGTGCTCGGTCTGCGGCAAGGCGTTCCTGTACAAGTACAACATGGTGGCCCACAAGAGGCAGCTGCACCCCGACTCGGACGACGGCGCGCGGGCGCACGAGTGCGAGGTCTGCGGCAAGACGTTCTCGTACAAGAAGTCGCTGCTGCTGCACCACGCGGCGTCCCACCGGGGGGAGGGCCGGGCATTCCTGTGCGACGTGTGCGGCAAGGCGCTGACCAGCAACGCCTCGCTGCAGGCCCACCGCCGCGTGCACACGGGCGACCGGCCGTTCGCCTGCGACAGCTGCGGCAAGCTGTTCGGCAAGCGCGGCACGCTGCGCGTCCACCGCCGCACGCACACGGGCGAGAAGCCGTACGCCTGCGACGAGTGCGGCAAGCGCTTCACACAGAGGCCGTCGCTGGTGGTGCACAGGCGCTACCACTCAGGCGAGCGTCCCTACAGGTGCCACATCTGCAACACGGGGTACGTGTCCAAGACGATACTCACAGCGCACCAGAGGAACCACGCTCCCTGA
- Protein Sequence
- MKTHATERRHACEVCFKAFKLLSQLSKHMRVHSGEKKYTCNMCGYSTAYKAYLEIHEKRHLGFFRVKCDICGKGFFSNWELKEHSAKHSGERSFRCDHCDCAYFYKNNLVQHKKIRHPEQKVKLNQCDTCGKVFVHRKSLLQHIASHTGENLFLCDVCGKSVTTKDSFKVHWRSHSGEKPLVCNVCGKAFSSRCNLRIHQRTHTGERPYTCEHCGKTFTQRTTLVIHKRYHTGDRPYDCLCDVCGKSFSYTRYLAAHKKANHPDAQNPARVNKCSTCGKVFAHKKSLSLHAKSHTGENIFLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKSCNLKLHQRTHTGERPYACDACGKSFSQRSTLVIHKRYHTGQRPYECHPCPVCNKKFSSKRQQTYHLRTHAVPIALQCEHCDAVCLSKKYLRSHLQKHVKERPYVCDVCSKSYKRPCELVTHKKIHTEAKSFVCSLCGYATMYRASFAKHRKRHLRDFPYSCDVCGKGFFEKRAAEVHGNLHLGSKPYWCSVCGKTFSQESNMVKHQKQLHPAAGDSVKVHACELCGKTFPYRKTYLAHLAGHRGERRVFLCDVCGKGLTSRTSLRQHRLMHDGDRPFSCDSCGKSFNRRCSLVVHCRSHTGEKPYACDECGKRFAQSSPLVIHKRYHSGERPYTCLICNTGFVSKTGSARKPQAKLKSQKRKSEHAGPHVCPVCDKKFNSEANLYFHVRTHTVSIAVQCEHCDTVCLTEKLLKSHMKTHSQERPFVCDVCSKTYKRSYELIKHKKIHAGVKNFKCSLCDYVTTYKAYLEMHEKRHLRDFKHRCDLCGKGYYTNTALENHRNVHTGHRPYQCSVCGKAFLYKYNMVAHKRQLHPDSDDGARAHECEVCGKTFSYKKSLLLHHAASHRGEGRAFLCDVCGKALTSNASLQAHRRVHTGDRPFACDSCGKLFGKRGTLRVHRRTHTGEKPYACDECGKRFTQRPSLVVHRRYHSGERPYRCHICNTGYVSKTILTAHQRNHAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -