Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-12 1.4e-09 40.0 0.0 3 45 74 117 72 117 0.94

2 4 2.6e-10 3.4e-07 32.3 0.0 1 34 126 159 126 166 0.90

3 4 1.6e-13 2.1e-10 42.6 0.0 2 45 182 226 181 226 0.96

4 4 2.3e-15 3e-12 48.5 0.1 1 41 233 274 233 277 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-12	1.4e-09	40.0	0.0	3	45	74	117	72	117	0.94
2	4	2.6e-10	3.4e-07	32.3	0.0	1	34	126	159	126	166	0.90
3	4	1.6e-13	2.1e-10	42.6	0.0	2	45	182	226	181	226	0.96
4	4	2.3e-15	3e-12	48.5	0.1	1	41	233	274	233	277	0.92

Coding Sequence: ATGTGTTTTTGTTGGGAAACAGCTGCAAGAGGAACCGTCAACTTCACACCGCTGCTGGTGACGGTGTCAAGCCTTGGGCCTACTATTGGTAGAGCTGGCCACTCCCGTGGCTACGCAACGCAGGAGTTGAGCCGGCCCGCAAGTCTCGAACACGGTGAGACCGGTGTTGAGATGACAACAGCTCTGTCGAGCTGCCTtggtCCCAAGACGTGGTCCAGCGAGGACATGGAGCTGGCACTGGACTCCCTGCGCCACCACAAGATGTCTCTGTCCGAGGCCTGCACCACGTACGGCATCCCCGCGACCACTCTGTGGCAGCGAGCGCACCGCTCGGGCATCCACACTTCCAGGAAGGAAGGCTGGAATAAGAACTGGTCGGAGGAGGACATGAAGAGCGCTCTCGAGGCCTTGCGGACGGGCTCCATGTCCGTCAAGAAGGCCAGCAAGACGTATGGCATCCCGAGCGGTCGACTGTATAAGATCGCCCACGAGGAAGGGATACGCCTGGCAGCGTCCTTCTGCACGGCGCCCACGGCCTGGACCTCGGACGACCTGGAGCGCGCCCTGGAGGCCATCCGCACGGACAGGACCTCCGTGCAGCGCGCGTCCACGGAGTTCGGCATCCCCCTGGGCACGCTGTACGGGCGGTGCCGGCGCGAGGGCATCGAGCTGTCCCGCGGCAACCCCACGCCCTGGTCGGAGGACGCGATGGCCGTGGCGCTGGAGGCGGTGAGCTCGGGCGAGATGAGCGTGCGCCTGGCCGCGCAGATGTTCAACGTGCCGTACTCGTCGCTGTACGGGCGCTTCAAGCGCTCCAAGCAGGAGCTGCGAGGGGACGACGCGGGCCGGTTCTCCCCCCCGGCCTCGCCCCCGCCCCAGCCTTCCTAG
Protein Sequence: MCFCWETAARGTVNFTPLLVTVSSLGPTIGRAGHSRGYATQELSRPASLEHGETGVEMTTALSSCLGPKTWSSEDMELALDSLRHHKMSLSEACTTYGIPATTLWQRAHRSGIHTSRKEGWNKNWSEEDMKSALEALRTGSMSVKKASKTYGIPSGRLYKIAHEEGIRLAASFCTAPTAWTSDDLERALEAIRTDRTSVQRASTEFGIPLGTLYGRCRREGIELSRGNPTPWSEDAMAVALEAVSSGEMSVRLAAQMFNVPYSSLYGRFKRSKQELRGDDAGRFSPPASPPPQPS

Sequence clustering based on sequence similarity using MMseqs2