Belo031681.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- -
- Assembly
- GCA_951217065.1
- Location
- OX578272.1:140717082-140719205[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.25 52 6.2 0.5 1 23 181 206 181 206 0.79 2 13 0.27 57 6.1 4.1 1 21 212 232 212 234 0.89 3 13 0.043 9 8.6 0.3 2 11 240 249 239 263 0.78 4 13 4.6 9.7e+02 2.2 0.1 2 11 269 278 269 292 0.81 5 13 0.023 4.9 9.4 5.4 2 23 299 320 298 320 0.96 6 13 1.7e-05 0.0036 19.3 0.1 1 23 326 348 326 348 0.98 7 13 0.0029 0.61 12.3 0.6 2 23 355 377 354 377 0.95 8 13 0.0035 0.74 12.0 0.3 2 23 385 407 384 407 0.94 9 13 1.3e-05 0.0027 19.7 0.3 1 23 445 467 445 467 0.99 10 13 0.00035 0.073 15.2 3.3 1 20 473 492 473 493 0.94 11 13 2.9e-05 0.0062 18.6 1.5 1 23 502 525 502 525 0.96 12 13 0.0041 0.86 11.8 0.4 1 23 531 553 531 553 0.95 13 13 4.1e-06 0.00085 21.3 2.0 1 23 559 582 559 583 0.95
Sequence Information
- Coding Sequence
- ATGAGTGTAGCAGAAAAGACTTGCAGAACTTGTGGCAAAACATTAGGACTGGAGGATGCACCAAGTCTCTGCTCCCTGTATAACGCTGTTGATTATCAGACTGAGATAGAAATGGCATTGGAAGAATTTGAAATATGGAATTTAAATATATCCCAAGACGATGGTTTACCACAGAAAATTTGTCTAACTTGTTTTGATAGTTTTTGCCAAATTCATAATTTTCGTTTGATGTGTGTCGAGGCACAGTTGAACTTTGCAGAAATGTGTACCGGTTTAGATATAATTATTAAAGATGAAGTATCCGACAAAGATTCATGCTATCCAGAAGATTACGATGGTGACCAGACAGTAACTGTTCAAGAACACTTTACATTTCCCGGCGATGAAtgtttgaaaagtgaaaaatcTAACAATGACCAATTTGAATACGTCAAAACAAGTGATGGAGGATTTAATACTGAATCAGATGAAGATCTTGAGACTATACCAAAACACGACAATCAGAATGAATTTGATGAAGATGTTCCTGAATTAAAACAATATCGATGTGAGTTCTGCATGAGATTCGTGAGTTTCGATGATCCTGATGATCTTAATAAACATTATAATGAGCTTCATTCTTCGGAGTTGCCTTACCCGTGCCCTAAGTGTGATATGTGCTTTGATAAATTAGCAAAACGAAACAGTCATGCTCGTTGTCATTTCGAAAAAACTCTGCAATGTGAAAAATGCGGTAAGAAATTCAAAGGAGACAAACAAATGATGGCACAGCATATGGCATATTATCACATTGACAAAGACCGAGAATGCCCTGTATGTCAACTAAAGTTTGAAAAGATCTCATTGAAAAAGTATTATTACCACATGTTATGGCATGATGAATCCAAACTGctcaaatgcaaattttgtgaCAAAAAGTTTATTCAATCTCCACACTTGGTGTGTCACGAAAAGACTCATCTATCAGAAGTCAAGTTTAAATGTGATGAATGTGGATTAGGATTTCAAAACCCTGGTCTTCTTAAAAACCATACTCTTATGCACGAGAGAAAAGAATTAGTTCAGTGTCCCGAGTGTCCTACAAGGTACTTTACTCGATCTGGTTTCAAGCTACATAATCAAAAAGTTCattatccagaaaaaaaaattttgcgttgtgaaatttgcaacaaaacttATCCGTTTGCATTTAAACTAGCtatacataataataaagttCACGGAGCGCCGCTTGAGCGTTCTCAAATGAATCGAACAATACGACCTATGACGGCTTCTGCGAAAAGACTCAAagtactaaaaaaaacaaataacaggAAGTATATAAAACCGTTTAAGTGTTCCAAATGTGATGAAGCGTTTGTGTTGGAAGTACAGTTACAAAGACACTTAAAAGTTCATGACGAGTACAGACCACATTCCTGTCATTTATGTACAAAAACGTTCAAACGGGAGGCTCACTTGAAATTGCACGTAGACTGTATTCACTTCAACAAAAAACCATTTAAGTGTACAATGTGCACGGCGGCCTTTGTGCAAAGAAGTCATTTAAGAGATCACATTACAATAAGACATgaagatataaaaaattacaaatgtgtAATATGCAGCAAAAGATTTGGAACATCTCAGATACTAAAGATGCATATGGTTGGACATTCAAGTGAAAGgccatttatttgcaaaatatgTAATAAGGGCTTTAAACAACAGTCAGTGCTGAGATctCACATGAACTGGAGCCATCATTGGAAAAACGAAGGTTGCCTCCCTGAAGAAACCACAACGGAAGTTTTACTTAaggaagaacaagaagaagaggATTATTCACAAATTCTATGA
- Protein Sequence
- MSVAEKTCRTCGKTLGLEDAPSLCSLYNAVDYQTEIEMALEEFEIWNLNISQDDGLPQKICLTCFDSFCQIHNFRLMCVEAQLNFAEMCTGLDIIIKDEVSDKDSCYPEDYDGDQTVTVQEHFTFPGDECLKSEKSNNDQFEYVKTSDGGFNTESDEDLETIPKHDNQNEFDEDVPELKQYRCEFCMRFVSFDDPDDLNKHYNELHSSELPYPCPKCDMCFDKLAKRNSHARCHFEKTLQCEKCGKKFKGDKQMMAQHMAYYHIDKDRECPVCQLKFEKISLKKYYYHMLWHDESKLLKCKFCDKKFIQSPHLVCHEKTHLSEVKFKCDECGLGFQNPGLLKNHTLMHERKELVQCPECPTRYFTRSGFKLHNQKVHYPEKKILRCEICNKTYPFAFKLAIHNNKVHGAPLERSQMNRTIRPMTASAKRLKVLKKTNNRKYIKPFKCSKCDEAFVLEVQLQRHLKVHDEYRPHSCHLCTKTFKREAHLKLHVDCIHFNKKPFKCTMCTAAFVQRSHLRDHITIRHEDIKNYKCVICSKRFGTSQILKMHMVGHSSERPFICKICNKGFKQQSVLRSHMNWSHHWKNEGCLPEETTTEVLLKEEQEEEDYSQIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -