Belo046259.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- -
- Assembly
- GCA_951217065.1
- Location
- OX578273.1:86969188-86971656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.2 1.7e+03 1.4 0.1 3 10 64 73 63 83 0.76 2 14 0.0073 1.5 11.0 0.1 3 19 336 354 334 358 0.89 3 14 0.005 1.1 11.5 0.1 1 21 363 383 363 388 0.93 4 14 0.096 20 7.5 0.2 3 19 398 416 396 420 0.89 5 14 1.8e-05 0.0038 19.2 0.2 3 23 442 464 440 464 0.90 6 14 0.0002 0.042 15.9 1.3 1 23 470 493 470 493 0.95 7 14 0.00018 0.038 16.1 2.6 1 23 515 538 515 538 0.93 8 14 0.0012 0.26 13.5 1.3 3 23 563 584 562 584 0.94 9 14 2e-05 0.0042 19.1 1.8 1 23 606 629 606 629 0.95 10 14 0.056 12 8.2 0.2 3 23 638 661 636 661 0.92 11 14 0.0093 2 10.7 0.4 1 23 714 738 714 738 0.97 12 14 0.0098 2.1 10.6 0.3 5 20 743 758 742 760 0.91 13 14 9.7e-05 0.02 16.9 0.1 1 23 767 791 767 791 0.97 14 14 0.98 2.1e+02 4.3 2.7 5 23 800 818 797 818 0.95
Sequence Information
- Coding Sequence
- ATGGCTGAAGAAACAGGAATACAAAGAGCAGGGTCTCCTACCGCCATTAACGGCATAAGACTGATTCGCAATCGCAAACGCAAATATAATTATTCAACTAAACGTTCATATACCAAAATGactaaatcaaaaaacaaagcGATGGTCTTACCTTCACCAGATGCAACAGGCCCAAAAATACGGAAGGCATGTCCAACAAAAGGATGTGATAAGGCATTCggcaaaactttaaaaatacacTTATTGAAGAAACCTATTATTTCTGATAATCCTTCCTCTAAAAGACGTTTTACTCGAACTTCCTACGAATTAGCCCGTAACACTTGCACTGATTCTAAGGAAACCCTGACTGATACTGACCAGTGTCGAAAGAGACGCACTCGCAGTTTTACGAAACACTTTCCTATCAATTCCGAAGAAACAAAAACGGATACAGCACTTACTCTCGAAAGATTTCTAGAGGAGAAGAATGATGATTCAGAAATCAGTGATTTGGAATTCAATAAAACACCTTTATTATCCGATTTTTCACAAAACTTAGATGTTATTGAGAAAGAAAATATAGATGGGCTATTTCACCATTTTGAACAACAGCTCGAAgaggaagaaataaaaatcgaagtcgagctaaaagaaattaatatagaaCCCGAGAACCATATCGAGTCCAaggtagaagaaataaatgtCGAAACCGAGGCAGAAGAAATGCAAATTGAACCTGAAAAGCTTACCAAGTCCGAGGCAGAAGAAATACAAATTGAACCCGAGGAGCATATCGGGCCGAATGTAGAAGACATACAAATTGAAACTGAACCTTCTATACGTGCTTTCCATTTGTTACAAATGCCATTTTCTATGTCATATGCCATCTATAATTTCTCCACTCCAAATAAGTCGAATTCAACGTCGAATGAGAATCTTTATAATTGGAGAAAAACTGATCTGAATGATCACATACAAAACCTAGAAGAACCTGATGTACCAAAACAAACCATCTGGATGTGCTCCGTAGATGGATGtgaaaaagcttttgaccaaagAGAGAATCTTACACAACACTCGTGGACACATTTTGAAAAGCCATTTGAGTGTGACCAATGCCAGGAAAGATTTGAGAGTGAAACAAGTCTCGATAATCACATAGAAAAACTAGGAGTTCATAATTTACCAAAACAAACAATCTGGAACTGCTCCGTAGATGGCTGTAGAAAAGCTTTTAACTTGCAAGATGATCTCACACAACACTCGTGGACACATTCTAAAATGCCTCACTTACAAAAACTAGGTGTTTCTTATTTACCAAAGCAAACCACCTGGATGTGCTCTGTAGAAAGCTGTGGAAGGACTTTTAAACGACGTGTCGATCTTATCCGCCACATTCGGGCACACTCTGGTAAAAGGCCTTTCATGTGCAGCCAATGCGAGAAAAAGTTTGCGACAGAAAAACGCCTTCAAAGGCACATTTTAGAAAAACATAACCCGATATCAAAACCAACCAGTGGCTCCGTTGAAGGGTTTGGAAAAATTGTTTCCACACCTTATATGTGCAGCCAATGCGAAAAAAAGTTTGCGACAAAAAAACGCCTTCAAAgacacatttttgaaaaacataaccCGATATCGAAACCAATCAGTGGCTCCGTTGAAGGGGCTGGACAAATTCTTTCCACACCTTATAATATGTGCAGCCAATGCGAGAAAAAGTTTGCGACAGAAAAACGCCTTCAAAAACACATTTTAGAAAAACATAACCCGATATCAAAACCAATCAGTGGCTCCGTTGAAAGGCTTGGAAAAATTCTTTCGATACCTTATATGTGCAGCCAATGCGAAGAAAAGTTTTCGACTGAAGACCATCTGCAAAAACACATTTTAGAAAAACATAACCCTGAATCCAAACCAATCAGTTGCTCATTTGAAGGATGtggaaaaattatgaaaagtgTTGGGGGTCTCAAACGACATATTAAACTGAAACACATTGGCGAAAAATCGTTGggaaaagaaaatgttaaacaaGACTCTTCCTCACGGAAACACTCGAAAAGGACCGTTGCCGTCGGCAAATCCAAAAATAGGCTTAGGAGAAAAATCGTTCTGAAACCTCTTTTAGAAATgaatgcaaatgaaaaaaatttcaagtgcACAGTTGAGGGTTGTAACAgaacatttttaagaaaagcATGGCTTATAATGCACTCTAAAGTGCACTCTGGCGGCAAACAATGCAAACAGAGGTTTAGGAGAAAAGTTGCTCTGAAACGACACCTAACTATCCGTCCAAATGATGGAAATTTCATCTGCCCCGTAAAAGTATGTGGTAAGGTTTTACCGAATAAAACAGCACTTTCCCGACATCTAAAGATACACTCTGGCATTAAGCCATTCCAGTGTGAATGCAAGCAGAGATTCCTGAGAAGAGACAATATGAACAAACACAAAAGAGAGCACTGTAAATGGCAGTAA
- Protein Sequence
- MAEETGIQRAGSPTAINGIRLIRNRKRKYNYSTKRSYTKMTKSKNKAMVLPSPDATGPKIRKACPTKGCDKAFGKTLKIHLLKKPIISDNPSSKRRFTRTSYELARNTCTDSKETLTDTDQCRKRRTRSFTKHFPINSEETKTDTALTLERFLEEKNDDSEISDLEFNKTPLLSDFSQNLDVIEKENIDGLFHHFEQQLEEEEIKIEVELKEINIEPENHIESKVEEINVETEAEEMQIEPEKLTKSEAEEIQIEPEEHIGPNVEDIQIETEPSIRAFHLLQMPFSMSYAIYNFSTPNKSNSTSNENLYNWRKTDLNDHIQNLEEPDVPKQTIWMCSVDGCEKAFDQRENLTQHSWTHFEKPFECDQCQERFESETSLDNHIEKLGVHNLPKQTIWNCSVDGCRKAFNLQDDLTQHSWTHSKMPHLQKLGVSYLPKQTTWMCSVESCGRTFKRRVDLIRHIRAHSGKRPFMCSQCEKKFATEKRLQRHILEKHNPISKPTSGSVEGFGKIVSTPYMCSQCEKKFATKKRLQRHIFEKHNPISKPISGSVEGAGQILSTPYNMCSQCEKKFATEKRLQKHILEKHNPISKPISGSVERLGKILSIPYMCSQCEEKFSTEDHLQKHILEKHNPESKPISCSFEGCGKIMKSVGGLKRHIKLKHIGEKSLGKENVKQDSSSRKHSKRTVAVGKSKNRLRRKIVLKPLLEMNANEKNFKCTVEGCNRTFLRKAWLIMHSKVHSGGKQCKQRFRRKVALKRHLTIRPNDGNFICPVKVCGKVLPNKTALSRHLKIHSGIKPFQCECKQRFLRRDNMNKHKREHCKWQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -