Basic Information

Insect: Baccha elongata
Gene Symbol: -
Assembly: GCA_951217065.1
Location: OX578272.1:118955032-118957995[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 23 7.3 3.6 2 21 264 283 263 286 0.94

2 10 3.9 8.2e+02 2.4 0.1 6 23 295 312 295 312 0.96

3 10 1.5e-05 0.0032 19.4 1.0 1 23 318 340 318 340 0.99

4 10 7.8e-06 0.0016 20.4 3.8 1 23 348 370 348 370 0.98

5 10 3.7e-06 0.00079 21.4 1.3 1 23 378 401 378 401 0.96

6 10 0.0024 0.5 12.6 0.3 3 23 409 429 408 429 0.96

7 10 4.6e-05 0.0097 17.9 0.4 2 23 438 460 437 460 0.95

8 10 0.00069 0.15 14.2 0.1 1 23 467 490 467 490 0.92

9 10 5.6e-07 0.00012 24.0 0.9 1 23 496 518 496 518 0.98

10 10 1.4e-05 0.0029 19.6 5.0 1 23 524 547 524 547 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	23	7.3	3.6	2	21	264	283	263	286	0.94
2	10	3.9	8.2e+02	2.4	0.1	6	23	295	312	295	312	0.96
3	10	1.5e-05	0.0032	19.4	1.0	1	23	318	340	318	340	0.99
4	10	7.8e-06	0.0016	20.4	3.8	1	23	348	370	348	370	0.98
5	10	3.7e-06	0.00079	21.4	1.3	1	23	378	401	378	401	0.96
6	10	0.0024	0.5	12.6	0.3	3	23	409	429	408	429	0.96
7	10	4.6e-05	0.0097	17.9	0.4	2	23	438	460	437	460	0.95
8	10	0.00069	0.15	14.2	0.1	1	23	467	490	467	490	0.92
9	10	5.6e-07	0.00012	24.0	0.9	1	23	496	518	496	518	0.98
10	10	1.4e-05	0.0029	19.6	5.0	1	23	524	547	524	547	0.98

Sequence Information

Coding Sequence: atgcttTGTATTTTGTGTGTAAATTTTCCGGATCAAATAATCGACATATTTAGTGAAGAAGGATTTACTCTGAATGTTTGCAGCATAATTGATAAACATTTTTGGATTCAgccAAATAAAAACGATGAAAATGCTAGATACATTTGTGGATCCTGCTGGAATGCACTGTATTCATTTCACAAATTCTATGAACAAGTCGAAGAGGCGCACTTAAATTTGTCTTTGACTGCAGATATTGCCCAGGAGGATTTAAAACCAGGTCAAGATGAGTCTACTGTTGAAGTAGAAATTCAGCtggtagaaaaaaattattccaatgaTGATTTTCCAAATACAGCTGTTAAATTGGAGCTAAAAGAAGATACAGAAATCTGCTTGCCATCATTTGAAAATACTCCTGACATCGAAACAAAGATTGACGTTGTGACCCTTCTACAGCAAGATTCACTGGACTCTAGCGACACAGATGACTCAGAAATTCCACTAGCAAACTATACAAAGACACACTTGAAAAAAAGACTTCTTGAAAAGAAGAACAATTCAACTTCCAGCAACGACGATCAGGAATCATTAGCTGAATGGCACGAAATTAAGGATGACGAACCAGATAGCGATTTTGAAGTTAACCTAAAAACGACGcctgaaagaaaaaatactGGGAAAAAACGTGGTCGACCGCTTAAAGGAACTCCCAAAAATACAACTCCCAAGCGAATTACTGCGGAACaactaaagaaaaaacaactatcGCGTCAGTACGACGATATTATACAAAAGCATATGAAGCTGACGTGTAGTATTTGTCAATTATCTTTGACAAACTTTTTTGCTCTTAAAAAGCACTACCGTTGCAAGCACAACGAGCGCggatattttttgtgttgtggcAAGAAATTCCTTAAACGCGGGGTACTCGTCGATCATATTTACACTCATTTGAATCCGGAGCATTTTAAATGTGACAAATGTGACAAAGTTCTTGCTGATCGAAGATGTTTAGAAGTTCACATGAACATACACAGTGAGGAAAAACAGCGCATCTATCAGTGTGAACAGTGCAACaaaagtttctttaaaaagCCCTTGCTGACGCGTCACATGCATATACACATTCCCAAGGAGGAGCGAAAATTCCACTGTGAGGAATGCGATAAGTTtTTTCCATCTAATTATACTTTGCGGGCTCATATAAACAATGTCCACCAAAATGCATATGCAAAATTCTGCGAACAGTGCGGAAAGTCGATACGCGGGCGAGAAGCATTCCAAAGGCATTTGCTAGAACACGCTGGCGTACCAATCCCCCTTGTACAATGTGACAAGTGTGGGGCTAAGCTGAAAAACAAATATGGCCTCAAGAGGCATATGAATGCAATGCATGCGGATACAAGTGTACCACATGTTTGCAACATGTGTGGCAAAGTAGCACCCAATGCCCCTGCACTTCAAAGACATTACGATTATGTGCATAGGTGTGAGCGTAATCACAAGTGTCCCATGTGTGATAAGGCATTTAAGAAAGCTGCAGGGTTGAAGgAACACATGACAACCCACACTGGAGAAGTCCTCTATACATGTCCACATTGTCCCAAAACATTTAACTCGAACGCTAACATGCATTCTCATCGTAAAAAAATGCATCGCAAAGAATGGGAAGAGAATAGGAGACATCCTCATATGGGAGCCACTACAAATGCTACCGAAACCGAGGAAAACAACCAGTAA
Protein Sequence: MLCILCVNFPDQIIDIFSEEGFTLNVCSIIDKHFWIQPNKNDENARYICGSCWNALYSFHKFYEQVEEAHLNLSLTADIAQEDLKPGQDESTVEVEIQLVEKNYSNDDFPNTAVKLELKEDTEICLPSFENTPDIETKIDVVTLLQQDSLDSSDTDDSEIPLANYTKTHLKKRLLEKKNNSTSSNDDQESLAEWHEIKDDEPDSDFEVNLKTTPERKNTGKKRGRPLKGTPKNTTPKRITAEQLKKKQLSRQYDDIIQKHMKLTCSICQLSLTNFFALKKHYRCKHNERGYFLCCGKKFLKRGVLVDHIYTHLNPEHFKCDKCDKVLADRRCLEVHMNIHSEEKQRIYQCEQCNKSFFKKPLLTRHMHIHIPKEERKFHCEECDKFFPSNYTLRAHINNVHQNAYAKFCEQCGKSIRGREAFQRHLLEHAGVPIPLVQCDKCGAKLKNKYGLKRHMNAMHADTSVPHVCNMCGKVAPNAPALQRHYDYVHRCERNHKCPMCDKAFKKAAGLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRHPHMGATTNATETEENNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00894204;
90% Identity: -
80% Identity: -