Basic Information

Insect: Baccha elongata
Gene Symbol: grau_2
Assembly: GCA_951217065.1
Location: OX578272.1:118936669-118949776[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.042 8.9 8.6 0.2 3 23 213 234 212 234 0.98

2 17 0.078 16 7.8 1.1 6 23 243 260 243 260 0.97

3 17 5.4e-05 0.011 17.7 1.2 1 23 266 288 266 288 0.99

4 17 6.8e-05 0.014 17.4 5.4 1 23 295 317 295 317 0.96

5 17 0.022 4.6 9.5 5.2 2 23 325 347 324 347 0.95

6 17 0.00016 0.034 16.2 1.3 2 23 355 377 354 377 0.96

7 17 0.00023 0.048 15.8 0.1 2 23 385 407 385 407 0.94

8 17 0.81 1.7e+02 4.6 0.4 1 16 413 429 413 430 0.88

9 17 0.00034 0.071 15.2 0.4 3 23 671 692 670 692 0.97

10 17 0.2 41 6.5 1.0 6 23 701 718 701 718 0.99

11 17 6.1e-05 0.013 17.6 0.2 1 23 724 746 724 746 0.99

12 17 1.4e-05 0.0029 19.6 1.4 1 23 754 776 754 776 0.99

13 17 2.8e-05 0.0059 18.6 0.3 2 23 783 805 782 805 0.95

14 17 1.3e-06 0.00027 22.8 0.5 3 23 813 833 812 833 0.96

15 17 0.00046 0.097 14.8 0.4 2 23 842 864 841 864 0.95

16 17 0.0021 0.45 12.7 0.0 1 23 871 894 871 894 0.92

17 17 0.00091 0.19 13.9 0.3 1 17 900 916 900 917 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.042	8.9	8.6	0.2	3	23	213	234	212	234	0.98
2	17	0.078	16	7.8	1.1	6	23	243	260	243	260	0.97
3	17	5.4e-05	0.011	17.7	1.2	1	23	266	288	266	288	0.99
4	17	6.8e-05	0.014	17.4	5.4	1	23	295	317	295	317	0.96
5	17	0.022	4.6	9.5	5.2	2	23	325	347	324	347	0.95
6	17	0.00016	0.034	16.2	1.3	2	23	355	377	354	377	0.96
7	17	0.00023	0.048	15.8	0.1	2	23	385	407	385	407	0.94
8	17	0.81	1.7e+02	4.6	0.4	1	16	413	429	413	430	0.88
9	17	0.00034	0.071	15.2	0.4	3	23	671	692	670	692	0.97
10	17	0.2	41	6.5	1.0	6	23	701	718	701	718	0.99
11	17	6.1e-05	0.013	17.6	0.2	1	23	724	746	724	746	0.99
12	17	1.4e-05	0.0029	19.6	1.4	1	23	754	776	754	776	0.99
13	17	2.8e-05	0.0059	18.6	0.3	2	23	783	805	782	805	0.95
14	17	1.3e-06	0.00027	22.8	0.5	3	23	813	833	812	833	0.96
15	17	0.00046	0.097	14.8	0.4	2	23	842	864	841	864	0.95
16	17	0.0021	0.45	12.7	0.0	1	23	871	894	871	894	0.92
17	17	0.00091	0.19	13.9	0.3	1	17	900	916	900	917	0.93

Sequence Information

Coding Sequence: ATGCTGTGCATTCTCTGTCTATCGGTGTCGGGTCAAAATCAAATGCTTGACATCTTCGATCAAACTGGAATAAACCTTAACACGAGCGACATCATATCCAAACACTTTTGGTTACAGCCAAATGCAGACGATATCAATACCAGATTCATATGCTGTTTATGTTGGGAAACAGTAGAATCATTTCATAAATTCTATCAAACAATTGAAGAAGCCCATGTGAAATCCACTGATTATCTAAAACTTCCAATTATTGCAGAAAATAGCGATGAATCGAATAATATCGATACATTTTCAGATATATCTATGCcagtcataaaaaaagaacattctGAAGACACTAAATTTGAGTTGCCAGAAATTGTGACAGATATCAATACCACTGAAAACATTCAACCAATTCATAATTTGATAGAAATCAGTAAAACTGAACTAAACAATGCCAATGAATCCGAATCAGATGACGTTTCAATAGTCCAACATAAATACGAAGAGCAAGAAGACACCGACTCTGACAGTCACAATTCATCTAAAAACAAAGGCAAAGTTAAACTTTCCTCTGCACCAAGTAGGTTAGGTAAAATAGGAATTCCACGTAGAGAATATGATAACGTAATCAAAGAAAATATGGAATTGTTGTGTAATGACTGTAACGAGATTCTTGAAAATTTCGCCGACCTTAAAGAACACTTTAAAACAGCACATACAAAAGAAGGATATGCAACTTGCTGTGGTGCGAAATTTACTACCCGCTTTTCTTTAGTACATCATTTGTTACTACATAAAAACCCAGATTTATACAAGTGTCAAAAATGCGGTCGTGTTTGGGCCAACAAGAAAAGCCTTAAGCAACACATTAAATCGCATGATAATCAAGAACGCATTCACGATTGTACAAAATGCAAGAAAAGTTTTTCTACAATAAAGAAATtggaaaaacatttgaaaaccCACATCAAATTACAAATTGATTTAATATGTGAACAATGTGGTAAAGTTTGTCACAGCAGACAAGGTTTTAAATCACACCAAAAGCGAAAACATATGGGTTTGTTGAAAAAACTTCAGTGTCAAAAGTGTGACAAAAAATTGGCAGATTCATCAACTTTATACACTCATATGAAGTATCAACATCCAGTAACTACTGTTTTGAATGAATGTAATATCTGTGGAAAAATATCGCCGACTCCACGCGGATTGAAGCGGCATATAGAATATATGCACTCAATGCAACGTATCCATAAGTGTCATATTTGTGAGGATAAAGCATTCAAGACACCGCATAGGCTTAGGCCAAATGTAAAAGATGCAAATGCAAAAGTAATATGTGCACCTTGTTGGGCGCAGCTAAGTTCCTTTCATCAATTCTATTTGCAAGTTGAGGAAGCTCATGCGAATCATCTAAACGTAATTCCAGTTGCAGCATATGAGAATGAAGAGTTAAAGTTCGAAAATGTAATTGCCCAATTAGCTGAAGAAGTTGCAAATGGATTGGACTCGGAATTTTTGGATtcagATATCAAACAAGAAGTCAAAGAAGATACCGAACTTGGTCTGACTTCATTTGATTCTCAATCTGCAAATGATAATGAGGATCCAAAAAATACAACTCCTGAAACAGGATTTCAGTCAGTTTCTCATGAAGCTCCACCTGCGAGCTCGACTAGAAGTCGAAAGTCTGCAAATAAATCTCATACCACAGTTGGAGATTCTTTTAGTGAAGAAGACAAAACCTATGACACATTGGAAGTTGAAAGATCTAATTCAATAGATTGGCAAAATGAAAAAGATAATTCAGACAACACTGAGGAAGATAGTGATTATGAGGATAGCCcaacaaaatctaaaaagtcGAGGGAACCTTCAAAGCAAATTAAGAAGCGTGGTCGACCTAGAAAAGGTGAATGCAGAACTCGCCCTTGCAACAAACCACGCAACTCGGAGGAACAGAATCTGAAAAGAAAACGCATGATAGAATTTGATGAAATAATTGCCAAGAATATGAAACTTTTGTGTTCAATCTgccaagaaatatttattaatttttccgcTCTTAAGAGACACTTTCGTTCCGCACACAACGAATGTGGATATGTGGTTTGTTGTACTAAAAAGTTTCGCAAACGCGGTGTTCTGGTTGATCACATTTGTACTCATCAAAATCCAGAATATTTTAAGTGTGAACAATGTGGTAGAGTGTTGGCCAACAGAAAAGGTTTAGACAGTCACATGCTTACACATGATACagaaaaacaaagaatataTCAATGTGATCAGTGTACGTTGAGTTTTTACACCAGACCGCTGCTAACACGTCATTTGCAGACGCACATTTCAGAACGAAATATCAAGTGTCCTGAGTGTGACAAATTCTTCTCAACACAAGACATCCTACGCACTCATATAAACAATGTTCATAATGCTGCATACACAAGGATTTGCGATCAATGTGGAAAGTCTTTCCGCCGGCCGGATGCTTTTCGCCGTCATCAGTTGGAACATGATGGTATATCTCGGCCAATGGTTCCGTGTGAAAAATGCAATGTTAAACTAACGAGTAAATATGGTTTGAAAAGACATATGGAATCAATGCACCCCGAACAAAATATACAGCATGTGTGTGACGAATGTGGAAAGATTGCACCAAGTGCTGCTGCATTGCAGCGACATGTCACTTACATGCACAAAATGGAACGTAAATACAAGTGTCCAATGTGTGATAAGGCATTTAAAAAGAGTGGCGGACTTAAGACACTAGTCTTAACAAAGAATATTCGTGTGCGGGCATACAGAGAAACGATTTCTCTGTAA
Protein Sequence: MLCILCLSVSGQNQMLDIFDQTGINLNTSDIISKHFWLQPNADDINTRFICCLCWETVESFHKFYQTIEEAHVKSTDYLKLPIIAENSDESNNIDTFSDISMPVIKKEHSEDTKFELPEIVTDINTTENIQPIHNLIEISKTELNNANESESDDVSIVQHKYEEQEDTDSDSHNSSKNKGKVKLSSAPSRLGKIGIPRREYDNVIKENMELLCNDCNEILENFADLKEHFKTAHTKEGYATCCGAKFTTRFSLVHHLLLHKNPDLYKCQKCGRVWANKKSLKQHIKSHDNQERIHDCTKCKKSFSTIKKLEKHLKTHIKLQIDLICEQCGKVCHSRQGFKSHQKRKHMGLLKKLQCQKCDKKLADSSTLYTHMKYQHPVTTVLNECNICGKISPTPRGLKRHIEYMHSMQRIHKCHICEDKAFKTPHRLRPNVKDANAKVICAPCWAQLSSFHQFYLQVEEAHANHLNVIPVAAYENEELKFENVIAQLAEEVANGLDSEFLDSDIKQEVKEDTELGLTSFDSQSANDNEDPKNTTPETGFQSVSHEAPPASSTRSRKSANKSHTTVGDSFSEEDKTYDTLEVERSNSIDWQNEKDNSDNTEEDSDYEDSPTKSKKSREPSKQIKKRGRPRKGECRTRPCNKPRNSEEQNLKRKRMIEFDEIIAKNMKLLCSICQEIFINFSALKRHFRSAHNECGYVVCCTKKFRKRGVLVDHICTHQNPEYFKCEQCGRVLANRKGLDSHMLTHDTEKQRIYQCDQCTLSFYTRPLLTRHLQTHISERNIKCPECDKFFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGISRPMVPCEKCNVKLTSKYGLKRHMESMHPEQNIQHVCDECGKIAPSAAALQRHVTYMHKMERKYKCPMCDKAFKKSGGLKTLVLTKNIRVRAYRETISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -