Belo030104.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- grau_1
- Assembly
- GCA_951217065.1
- Location
- OX578272.1:113874041-113879700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.05 11 8.4 0.2 2 23 260 282 259 282 0.94 2 19 0.0025 0.52 12.5 1.3 1 19 314 332 314 337 0.96 3 19 0.0063 1.3 11.2 2.4 1 23 345 367 345 367 0.94 4 19 6.8e-06 0.0014 20.6 0.3 1 23 375 398 375 398 0.94 5 19 0.091 19 7.6 0.2 3 23 406 426 404 426 0.95 6 19 0.055 12 8.3 0.4 2 23 435 456 434 456 0.95 7 19 1.9e-05 0.004 19.2 0.1 1 23 461 484 461 484 0.97 8 19 6.7e-07 0.00014 23.7 2.9 1 23 490 512 490 512 0.98 9 19 4e-05 0.0084 18.2 6.2 1 23 518 541 518 541 0.98 10 19 0.82 1.7e+02 4.6 0.3 3 23 683 704 682 704 0.94 11 19 0.15 31 6.9 0.3 6 23 713 730 713 730 0.99 12 19 8.9e-07 0.00019 23.3 0.4 1 23 736 759 736 759 0.96 13 19 1.3e-05 0.0026 19.7 0.6 1 23 767 789 767 789 0.98 14 19 6.8e-07 0.00014 23.7 0.2 1 23 797 820 797 820 0.97 15 19 1.5 3.2e+02 3.7 0.1 3 23 828 848 827 848 0.93 16 19 0.1 21 7.4 0.7 2 23 857 879 856 879 0.95 17 19 0.13 27 7.1 3.0 1 23 887 910 887 910 0.95 18 19 1.2e-05 0.0024 19.8 4.7 1 23 916 938 916 938 0.98 19 19 0.00014 0.029 16.4 2.9 1 23 944 967 944 967 0.97
Sequence Information
- Coding Sequence
- ATGTTATGTCGATTGTGTTTAAGTAATTCAAAtgaaactttatttatattcaatgaAGACaacattcaaaaatatatatcaaaatttctgcaattgcagATATCGCCAGAAGATCCAGTTTCTCAGGTAATATGCTCTCGTTGTTGGCACCAATTggatagttttcaaaatttttgctACGAAATAGAGCAAGCACAAGAAACACTTAAGAAAACAGTATTCGCAGAGTCAAATCAGAATTCTTATCAGAATGAAAATGGACCATTAAATAAAGAAGATTTAGACGGTGAATTAAGTGATACTGAAGGtaacaCGAGTTGGCTTAAAGAAGAAAATCTGGCAGAATCTgatgatgATATTCGAGAAAGTAACGAAACGGCATACTGCTTAGGTGAAGAAATTGTTGcgtttaaattacaaaatgagCTTGCAACAAAATCTGAAACTATTTCTTCTGCAGTCCGTAGAATAACTCGACAGTCAACAAATCAAAAACAGGAGAtctacaaaattccaaaaaatgaACAGGTAAAAAGTAAACGCGGTCGacgcaaaaaaaatgaaaatgccgAGAAAGAAGCAATAACTGCCGAGAAGGAAGACAAacttgatttaaataaattaaacaacgaTCCAAACGCAAAAAGAAGACGTGGTcgacccagaaaaggtgaaaaAGTTGAACCAAAAGTTAAAAAGCCCAGGTCAGAGCAGTGTTCAAAAATGTTACAAACAGCTAAAGAATTCGatgaaattattcaaaaacatatgAACTTGTCGTGCAACATTTGCACCGTTAGGCTTATTGATTTTGCTGAATTAAAACGTCATTTTCGAGCCGTTCACCAATGCAGAGGATATGCTGTGTGTTGCAACAAGCGTTTATTCAAACGTGGTCTCGTTGTAGATCATATCAATGTGCATAATGATCCTGAGCATTTTAAATGTCCAAAATGCGGTAAAGTACTGGCTGATAGAATGTGTCTTCGAAATCACGACCTATTGTTCCACCAAACTGAAGAACTGAAAACATTTCAATGTGCATATTGCCCTAAAAAATATGCTAAACAATATTTACTGGATCATCACAGTGTGAAACACGTTCCACAAGATGAATGCACTTTTTTTTGCGCAGAATGTGGAAAAGGattcccCACAAATTCAACTCTAACAAAACATGTAAATCAAATCCATTCAACAGTATATGACAAAATGTGTGAAATCTGTGCGAAGCTTATTCGTGGTAAGGCTAATTTTGAGCGTCATATGGAAGAGCACGAGGGTATAGTACAGCCTCAGGTACAATGTGCAGAATGTGGTTCTTggttaaaagataaaaatagtCTTCGAAAGCACATGTACAAACATGATGGTAAAACTTACAACTGTGGTATATGTGGCAAAAATGCGCCGTCCAAGAGTGCACTGCAAAGTCATATGAGATATGTGCATGAAACATCGCGTATGTTTCATTGCACATATTGTGACAAGTCATTCAAAAAAGCAGTCAATTTGAAAgaACACATGGCAACTCATACTGGAGAAGTCCTCTACACATGCCCGCATTGCCCAAAAACCTTTAACTCAAAGGCCAATATGCACTCACATAGGAAAAAAAAGCATCGAGAAGAGTGGGAGGCGAACAGACGTTACAACAAAAAGGAATCTAACAGTGAAatacTACCCGAAGATCCAGTATCCAAAGTAATATGTGGTACTTGTTGGCagcaattaaataattttcagaACTTCTGCCTTCAAATAGCTGAAGCCCAGCAAAAACTCAACGAAGGACACACATCTAGTCAAAATGGTGTTGAACCTGATAAAACTACAAGTGAAGAATATAATAAAGAGAAGAACTTCAAAGacGTTACCTCCCAAAAAGTCGAAGACCAAGAAAAAGCCGATGCAAAAAGGAAGTGTGATGAAACcataaaaaatgaacaaaataatatgcCAGATAAGACAAGCAAGTCTGAAAAGAACTTAAAAGCAATTCAAACTAGAAATGATGTAATTATTCAGAAGCATATGAACCTTTTGTGTGATATTTGCTTTATCAAGCTTTCTGATTTTACCGAGCTAACACTACATTTTCAATCAATTCACCAACGCAAAGGTTATGCTGTTTGCTGCaataaaaaattcagaaaacgtTACTTAATTGTGGATCATATTAATGTACATAACAATCCTGAGTATTTCAAATGCACAGATTGTGGTAAGGTTCTATCTAACAGATCAGCCCTACAAAGACACGTTATTTCGTTTCATCAAATCGAAGAACTTAAAACATTTCAATGCACCTATTGTCCTGAGAAATTTCCCACGCAATATATGCTGAATCTTCATATTGTCAAACACGTTCCACAAAATGAATGTACTTTCATTTGTGACCAATGTGGTAAAGGattccctacaaactcaaatttaattattcatttaaaGCGAAACCACTCAACTGTCTACGACAAGATGTGTGAAATATGCGCAAAACTTATTAGAGGTACAGGAGCTTTTAAACGTCATATGGAAGAACATGAGGGTATTTTTCAGCCTCAAGTACAATGTACGGAATGTGATTCCtggtttaaaaacaaatatattctaCGAAGGCACATTAGCAGTCAACATAGTCAAAATGACGATAAAACACACACCTGTAATATTTGTGGCAAAAATATGCCATCGAAAAACTCACTTAATTGTCATATCAAAAATGTACATCAACCGTCGCGCATGTTTCATTGCACATATTGTGAtaagtcatttaaaaaaaacattaatttaaggGAACACTTGACAACTCACACTGGAGAAGTACTTTACTCATGTCCACACTGTCCAAAAACATTTAACGCAAAGGCCAACATGTATTCTCACCGCAAAAAAAATCATCCTCAAGAGTGGGAGGCAAATAAGCATTGTGCTAGAAAAAGTACCGATTAA
- Protein Sequence
- MLCRLCLSNSNETLFIFNEDNIQKYISKFLQLQISPEDPVSQVICSRCWHQLDSFQNFCYEIEQAQETLKKTVFAESNQNSYQNENGPLNKEDLDGELSDTEGNTSWLKEENLAESDDDIRESNETAYCLGEEIVAFKLQNELATKSETISSAVRRITRQSTNQKQEIYKIPKNEQVKSKRGRRKKNENAEKEAITAEKEDKLDLNKLNNDPNAKRRRGRPRKGEKVEPKVKKPRSEQCSKMLQTAKEFDEIIQKHMNLSCNICTVRLIDFAELKRHFRAVHQCRGYAVCCNKRLFKRGLVVDHINVHNDPEHFKCPKCGKVLADRMCLRNHDLLFHQTEELKTFQCAYCPKKYAKQYLLDHHSVKHVPQDECTFFCAECGKGFPTNSTLTKHVNQIHSTVYDKMCEICAKLIRGKANFERHMEEHEGIVQPQVQCAECGSWLKDKNSLRKHMYKHDGKTYNCGICGKNAPSKSALQSHMRYVHETSRMFHCTYCDKSFKKAVNLKEHMATHTGEVLYTCPHCPKTFNSKANMHSHRKKKHREEWEANRRYNKKESNSEILPEDPVSKVICGTCWQQLNNFQNFCLQIAEAQQKLNEGHTSSQNGVEPDKTTSEEYNKEKNFKDVTSQKVEDQEKADAKRKCDETIKNEQNNMPDKTSKSEKNLKAIQTRNDVIIQKHMNLLCDICFIKLSDFTELTLHFQSIHQRKGYAVCCNKKFRKRYLIVDHINVHNNPEYFKCTDCGKVLSNRSALQRHVISFHQIEELKTFQCTYCPEKFPTQYMLNLHIVKHVPQNECTFICDQCGKGFPTNSNLIIHLKRNHSTVYDKMCEICAKLIRGTGAFKRHMEEHEGIFQPQVQCTECDSWFKNKYILRRHISSQHSQNDDKTHTCNICGKNMPSKNSLNCHIKNVHQPSRMFHCTYCDKSFKKNINLREHLTTHTGEVLYSCPHCPKTFNAKANMYSHRKKNHPQEWEANKHCARKSTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -