Basic Information

Insect: Baccha elongata
Gene Symbol: -
Assembly: GCA_951217065.1
Location: OX578272.1:49177223-49180433[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0019 0.39 12.9 0.3 1 23 116 139 116 139 0.95

2 14 8.1e-05 0.017 17.2 0.4 3 23 146 167 145 167 0.94

3 14 3e-05 0.0064 18.5 2.2 2 23 178 200 178 200 0.96

4 14 0.00058 0.12 14.5 2.8 2 23 249 271 248 271 0.94

5 14 0.00056 0.12 14.5 3.8 3 23 418 438 416 438 0.97

6 14 1.6e-06 0.00034 22.5 2.1 1 23 444 466 444 466 0.98

7 14 0.0013 0.28 13.3 3.4 1 23 472 494 472 495 0.96

8 14 3.8e-07 8e-05 24.5 1.1 2 23 508 529 508 529 0.97

9 14 0.0049 1 11.6 0.7 2 23 535 556 534 556 0.97

10 14 2.9e-06 0.00062 21.7 1.8 1 23 562 584 562 584 0.96

11 14 0.00019 0.039 16.0 3.1 1 21 590 610 590 612 0.94

12 14 8.2e-07 0.00017 23.4 0.8 1 23 618 640 618 640 0.96

13 14 8.6e-07 0.00018 23.4 1.5 1 23 646 668 646 668 0.99

14 14 2.1e-05 0.0045 19.0 0.3 1 23 673 696 673 696 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0019	0.39	12.9	0.3	1	23	116	139	116	139	0.95
2	14	8.1e-05	0.017	17.2	0.4	3	23	146	167	145	167	0.94
3	14	3e-05	0.0064	18.5	2.2	2	23	178	200	178	200	0.96
4	14	0.00058	0.12	14.5	2.8	2	23	249	271	248	271	0.94
5	14	0.00056	0.12	14.5	3.8	3	23	418	438	416	438	0.97
6	14	1.6e-06	0.00034	22.5	2.1	1	23	444	466	444	466	0.98
7	14	0.0013	0.28	13.3	3.4	1	23	472	494	472	495	0.96
8	14	3.8e-07	8e-05	24.5	1.1	2	23	508	529	508	529	0.97
9	14	0.0049	1	11.6	0.7	2	23	535	556	534	556	0.97
10	14	2.9e-06	0.00062	21.7	1.8	1	23	562	584	562	584	0.96
11	14	0.00019	0.039	16.0	3.1	1	21	590	610	590	612	0.94
12	14	8.2e-07	0.00017	23.4	0.8	1	23	618	640	618	640	0.96
13	14	8.6e-07	0.00018	23.4	1.5	1	23	646	668	646	668	0.99
14	14	2.1e-05	0.0045	19.0	0.3	1	23	673	696	673	696	0.91

Sequence Information

Coding Sequence: ATGGAGTACGACATCGAAAAAATGTGTAGGGTTTGCCTAAAAACCAATTTAGATACAGTATTATTGTTTGAAGAACCAAAGAAAGTCGGTGGGGTCAGTATTTGTGACATGATTTCAGAACTAACTATTTACCAGGTCCGCCGGCATGATGATTTCCCACATCTTATTTGTTATGAATGCATCGAACGAGTGGAAAGTGCTTATGGCTTCAAAAGGGACTTTGAGCAATCTCAACGTAAAATTATTACATACCTGGATTCAGTCAATAAATACCAAGTCCTGTCGGGTGAAATGAAGTTTACACAGACTGAGGAAAAAAGCACACAGACTATAGATTCCACTTTGTATCCCTGTGAAAAGTGCGATCAGAAATTTATCAAATATGAACGATTGCGGGAACACCGTGCAGTCGCACACAAAGGATCCGCCAACTTATGTCGGATATGCAACAAAACATTCAATCGCTTGGCAGGTTTAAAAAGTCACATGAGTGCGGCTCATCCAGAAATTGGTTATCACAATTCATCCAATGAATGTTatgtttgtaataaaatttttacgcGCAGAGATCACGTTACTCGTCACCTACGAAATGTTCACAAAATTGAATCCTCTGGAGTTGGAATCCAAATGGAATCAACAAAGATCGACGAAGAtggaaatttttcaaatctaATAACGGAAGACGAAGAATGCATGGAGGATAGTTTAGTGAATAATAAAGACAAGCATAAACAACAGATCGAATGTCTTGTTTGTTACAAACATTTTTCGAGCAATAATAGCCTTCATCGACATATGGAAAATGTGCATCAACTAGATCCTTCTCATATTCTAAAGCAGGAACTAAATGACGAAATGGATACTTTTTCAAGTGAAATGGAAATGCTTTCTGAACCTGACGCATTTAAAAGCTTCACAAATAAAgatgacgaagaagaagaagaagaagaagactaTTATGACAATGAAGAGGATAACAATGGTGAAGTTACAGACTCAGAGGAAGATGGAGCCATAAATACTAGTACTGAGTTTGTCGCAGCAAATAGTTTCATCAAACATGAAGAAGAATCTgctgatgtaaaaaaaaaacaacaagcagATGTGAGCacagttaaaataaaagaagaaaaggcAGAAATAAACATTACCGAAAATATTTATATCGCACCTAAAATACAAGATCGTGGAGTTGGATCGAATTCTACTTTTGATTGTTTTCATAGAATAGATGATGGCAAATTTGGATGtaatttgtgtgaaaaaacgtTCAAGTCATCTTATCACGTTAAAAGACATTTCTTATCACACACACAGGAAAAAGCATTCCCATGTACAATATGCGAgatgcggttcagtagagctgatCATCTTAAAAATCACATGACCAAGCATAATCCAGTAAAGCCATTTCAATGTGATAGCTGCACAGCGAGTTATGGTCGTGCAGATCATCTTAAACGTCACAAAGAAATGCACCATCCAATCGATGGGAATAATAGCCAAATCAAAACTGAAGTTTGCGAATACTGTAATAAGTCATATAGTACTAAAGCATATCTACAAAAGCATATGCTAAAGCATTTAGAGAAATGTtggaaatgtaaaatttgttcCGTTGAGTGTGAATCTAGTGAAGCTCTTAAGGATCATGTTAAATCGCATAACAAAGACAAGCCATTTCTGTGTTCGGAATGTGGTTTGTGTTTTCCAAGGAAAAATTATCTTATTATTCATATGCGAAGGCACAATGGAGAACGACCGTACAAATGTCAGTATTGCGAGAAGGGCTTTCCCCGTTCAACTGACCTAAAAGCGCATGAAAagtgtCATACGGGAgagaaaacacatttttgtaaCGTATGTGGCAAAGGATTTCCGCGCCCATATAAATTGTCTGTACATATGAGGATTCATACGGGTGAAAAACCATATCAGTGTATGTATTGTCCGAAGGCTTTTGCTCAATGCAACGATTTGAAAGCGCATATTCGAAGACACACCGGAGAGCGCTTTAGGTGCGATATATGTGGGGCtggttttattcaaaaatacaatttgaCTCAACACAAATCTGATGCACATGGAATCCTTCCCGAGTCACGTCTAGGTCGAGTGACTAAAATTCAAACTGGGGAACCACCTGCAGAGGTAATGTCCGATATTATGAATGGTTCTGATGGGAAAATGCAATTGGGACTGACAACGAATTTGTTATTTCGTGGTGTGGCGCTTCATTAA
Protein Sequence: MEYDIEKMCRVCLKTNLDTVLLFEEPKKVGGVSICDMISELTIYQVRRHDDFPHLICYECIERVESAYGFKRDFEQSQRKIITYLDSVNKYQVLSGEMKFTQTEEKSTQTIDSTLYPCEKCDQKFIKYERLREHRAVAHKGSANLCRICNKTFNRLAGLKSHMSAAHPEIGYHNSSNECYVCNKIFTRRDHVTRHLRNVHKIESSGVGIQMESTKIDEDGNFSNLITEDEECMEDSLVNNKDKHKQQIECLVCYKHFSSNNSLHRHMENVHQLDPSHILKQELNDEMDTFSSEMEMLSEPDAFKSFTNKDDEEEEEEEDYYDNEEDNNGEVTDSEEDGAINTSTEFVAANSFIKHEEESADVKKKQQADVSTVKIKEEKAEINITENIYIAPKIQDRGVGSNSTFDCFHRIDDGKFGCNLCEKTFKSSYHVKRHFLSHTQEKAFPCTICEMRFSRADHLKNHMTKHNPVKPFQCDSCTASYGRADHLKRHKEMHHPIDGNNSQIKTEVCEYCNKSYSTKAYLQKHMLKHLEKCWKCKICSVECESSEALKDHVKSHNKDKPFLCSECGLCFPRKNYLIIHMRRHNGERPYKCQYCEKGFPRSTDLKAHEKCHTGEKTHFCNVCGKGFPRPYKLSVHMRIHTGEKPYQCMYCPKAFAQCNDLKAHIRRHTGERFRCDICGAGFIQKYNLTQHKSDAHGILPESRLGRVTKIQTGEPPAEVMSDIMNGSDGKMQLGLTTNLLFRGVALH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -