Basic Information

Insect: Baccha elongata
Gene Symbol: Bcl11a_1
Assembly: GCA_951217065.1
Location: OX578273.1:14850724-14861669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0002 0.043 15.9 2.4 1 23 250 272 250 272 0.98

2 19 5.1e-08 1.1e-05 27.3 1.7 1 23 277 299 277 299 0.99

3 19 0.00094 0.2 13.8 0.1 3 23 316 335 315 335 0.98

4 19 5.1e-06 0.0011 21.0 0.4 1 23 341 363 341 363 0.99

5 19 7.1e-07 0.00015 23.6 1.1 3 23 371 391 369 391 0.96

6 19 1.2e-06 0.00026 22.9 1.0 1 23 397 419 397 419 0.99

7 19 0.0061 1.3 11.3 0.3 1 23 425 449 425 449 0.92

8 19 2.3e-05 0.0049 18.9 0.8 1 23 576 598 576 598 0.97

9 19 0.019 4 9.7 0.4 3 23 615 634 614 634 0.86

10 19 0.21 44 6.4 1.6 3 21 642 660 640 662 0.94

11 19 9e-07 0.00019 23.3 0.6 1 23 668 690 668 690 0.96

12 19 2.8e-06 0.00059 21.8 1.0 1 23 696 718 696 718 0.99

13 19 0.00013 0.028 16.5 0.1 1 23 724 748 724 748 0.91

14 19 2.7e-05 0.0057 18.7 4.9 1 23 851 874 851 874 0.95

15 19 0.0008 0.17 14.0 0.1 3 23 889 908 888 908 0.97

16 19 1.4e-05 0.003 19.6 2.3 1 23 914 936 914 936 0.99

17 19 2e-05 0.0042 19.1 0.6 1 23 942 964 942 964 0.98

18 19 2.3e-05 0.0048 18.9 1.6 1 23 970 992 970 992 0.99

19 19 0.0038 0.81 11.9 0.2 1 23 998 1022 998 1022 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0002	0.043	15.9	2.4	1	23	250	272	250	272	0.98
2	19	5.1e-08	1.1e-05	27.3	1.7	1	23	277	299	277	299	0.99
3	19	0.00094	0.2	13.8	0.1	3	23	316	335	315	335	0.98
4	19	5.1e-06	0.0011	21.0	0.4	1	23	341	363	341	363	0.99
5	19	7.1e-07	0.00015	23.6	1.1	3	23	371	391	369	391	0.96
6	19	1.2e-06	0.00026	22.9	1.0	1	23	397	419	397	419	0.99
7	19	0.0061	1.3	11.3	0.3	1	23	425	449	425	449	0.92
8	19	2.3e-05	0.0049	18.9	0.8	1	23	576	598	576	598	0.97
9	19	0.019	4	9.7	0.4	3	23	615	634	614	634	0.86
10	19	0.21	44	6.4	1.6	3	21	642	660	640	662	0.94
11	19	9e-07	0.00019	23.3	0.6	1	23	668	690	668	690	0.96
12	19	2.8e-06	0.00059	21.8	1.0	1	23	696	718	696	718	0.99
13	19	0.00013	0.028	16.5	0.1	1	23	724	748	724	748	0.91
14	19	2.7e-05	0.0057	18.7	4.9	1	23	851	874	851	874	0.95
15	19	0.0008	0.17	14.0	0.1	3	23	889	908	888	908	0.97
16	19	1.4e-05	0.003	19.6	2.3	1	23	914	936	914	936	0.99
17	19	2e-05	0.0042	19.1	0.6	1	23	942	964	942	964	0.98
18	19	2.3e-05	0.0048	18.9	1.6	1	23	970	992	970	992	0.99
19	19	0.0038	0.81	11.9	0.2	1	23	998	1022	998	1022	0.91

Sequence Information

Coding Sequence: atggaagaaACTATTTATTTGGACCATTTAACTTGTCGAACATGTTTAAGCAATAATAATGATGGTTCAAATTCTCTTTTCGATTGCGTTGAATACgaaacaaatattgaattaacaaagaTCCTGTGGAGAttttcaaaagttgtgATTTcttcaaatgaaattaaaaaacctACTCGTATTTGTATGCCCTGCACGGAAAGACTTCTTGAGGCATATGATTTTTTGATCAAAGTTGAAGATAGTGAGAAAAAACTCCAAGAATACTTTGAAAGTCGAGAGAAATTCGAAGAATTGCAGGAGGACCAGGAGTTGGTTCAAACTATTGAAGATGCTGCAGAGGAGGAGTTTCAAATAGTTGGGGATATATTGGAAGAACCATCCCAAGAAGAATACGATTTTAATAATGTTGTTGCTGTGGAATTGCAAGAAAATCAAGTCGGTACAAGTGAAGTAAAAACTGCATGTTTACGACTAGAACCGGAGTCTTTGATTGTTCCTGATAATGAATTTATTCAACAAATTGGAGTTATTAAAGCCGAAGAATCATCTGGTCAATATGAAACATCAGTTGAGGATAAAATCTTAGATAATGTATCAATCAAATCAGAAACAGAAGAGCAAGCATCAATGGAAGTTGAACAACTTGATGAAATTAATTGtgAATTCTATCTGCAAGaggattatgaaaaaaaaattgaagaacaaaataatCAGCAAACTGATAATACCAATGAAGAAAACACTTTTCAATGCTCTAAATGTCAAAGATTCTTTGACAAAAGAGATGCCTTACTGCGCCATGAGAAATCTCATTTAGCCAATTCCTTTCAATGCAGTCAATGCGATAGAAATTTCACCCGTAAAGACAATCTTGTCCGACATATGATAACACACAAAGAAGTTGGCGAAGGTCAAAGAAAGCATAAATATAAACATGGTCTATGTCCATTCTGTGGTGAGAGTTTTCCTCAAGCTAGTCTAATAATTCACATACGGCGACACACTGGTGAAAAGCCCTATAAATGCGACATATGTGACAAAGGATACCCACGCTCTCAGGACCTAATGATACATAAGCGATCACACACTGGTGAAAAACCACACTTGTGTAATACCTGTGGAAAGGCATTTTCGCGTCCGAATAAACTGGCCCGACACATTCGAGTGCACACTGGTGAACGTCCGTATAAGTGTACGCAATGCAGCAAAGCATTCGCACAATCGAACGATTTGAATCTTCACATTCGTCGACACACGGGTGAGAAACCTTACAAATGTGGTATTTGTTACGAAGGCTTCATAAATGGAACAGCTTTGAAGAACCATCGAAAGTCAGCAAAGCATTTTAGCATAGAAGATCAGCGGCCAGATCGTTATGAAAAAATTCGTGTTACAAACCCTCATCGACCTTGTTGGAGGACAAAACTGAATGGACATGAGTCTGCATCTTCGCAGAAGGACGAAGAATCAATATCTAAAAATATCGAAAGCTTAGAAGAAGCTTTAGATCCTTGGGAAAATAATGAAGAATCGAATGAAAATGATGACAACATCTCCGTCAAATCAAATAACTCTTTATTAACACCAATTCTTGATCCAGAAGTGTCGAATTGTAAAACCGAATTTCAAACAAACCAACTTGACGAATGCGGGGATATAGAAAAAAATCCTGAAACAATATTGGAGCAAAACGACGAAAAGAATGAATCCGAACGTCATAATTATGCATGCAATCAGTGTGATCGAACTTACGCTCGTAAAAAAAATCTCGACAAACATGTTAAAGCACACAAAGATCTCGAGGAAGGTATTAGAAAGCCTCCAGAAAAGTTTGGCATTTGTCCACATTGTGGTGAGAATTTCCCTCAAAAAAGCTTACCCGTTCATATTCGACGACATACTGGTGAAAAACCCTTTGGATGTGACCAGTGCGAAATGCGATATGTCCGTCGTCAAGATCTTATTGTACATAAACGTTGTCACACTGGTGAGAAGCCACACATCTGTTTGACTTGCGGAAAAGCATTCTCACGTGCAAATCAACTTGTACGACATATAAGAGTGCATACTGGCGAACGGCCCTACAAGTGCAATCGATGTGACCGAGGATTTGCGCAGAGGAACGATTTGAATCTACATATTCGTCGACATACCGGTGAAAAACCATATGAATGTGGCATATGTGGTGAATCCTTCATAAATGGGACAACCCTTAAAAATCACCGCAAAATTGCAGATCATTATGAAGAAGAGAGACGAGATCGATTTGAGAAAATTCGTGTAACCAATCCTAGGCGAACATACCGGGCAACTCCATTGCCtaagcaaccgcaagtaccgTTTGTGCTAATTATAGTTACAGAAAAAGTTATCAACTGTGAAGAGAACGTCGACAAGTTAGAAACGTTAGCTATAGATTTCCAGGAAGAAGCTGGTGAAACACAAATCAGTTCGAGTGATTGGAATGATGAcccagaaaaaaatttagaattaatccaggaaatattacaaaaGTCTAGAAGTGAAAATccatcaaaaaaacaaacatttccatGTGAGCATTGTGGTCatagttttaaaagaaaagcGAACTATTTACGACATCAGCTTCAGAAACATCCGGAAGGGAAAATAAATACCAATGAAGATAAGTACGGTATTTGCCCCTACTGCGGTGAAAGTTATGCTAAATCAAGTTTGTCCTTACATATTCGTCGACATACCGGTGAAAAACGTTACAAATGCGATATGTGCGAAAAAGCATTTGTAGAATTACATGATCTTAAACGACACAAGCGCATGCATACCGGTGAGAAGCCGTATGTTTGTTTGACATGTGGCATGGCTTTCACCCAACAAAGTAGACTAACCCGCCACAAACTAGTGCACACTGGTGAACGTCCTTACAAATGTGATCGATGTGACAGCGCATTTACCCAAAATAATACATTAAAACTACATATTCGACGTCATACCGGTGAAAGGCCGTACGTGTGCGGTGTGTGCGATCAGGGATTTATTTCTGGGACGCTattaagaaaacataaaaagatGGAGTCGCATTATGAAGATATACATAAAGGTGGTCTTGAAAAGACGAGCCAATCGAAACCGACTTGTTCAAAGCCCAACCATAATGGTGAAGACGAAATTAAAGTTACTGATAGAGATTAG
Protein Sequence: MEETIYLDHLTCRTCLSNNNDGSNSLFDCVEYETNIELTKILWRFSKVVISSNEIKKPTRICMPCTERLLEAYDFLIKVEDSEKKLQEYFESREKFEELQEDQELVQTIEDAAEEEFQIVGDILEEPSQEEYDFNNVVAVELQENQVGTSEVKTACLRLEPESLIVPDNEFIQQIGVIKAEESSGQYETSVEDKILDNVSIKSETEEQASMEVEQLDEINCEFYLQEDYEKKIEEQNNQQTDNTNEENTFQCSKCQRFFDKRDALLRHEKSHLANSFQCSQCDRNFTRKDNLVRHMITHKEVGEGQRKHKYKHGLCPFCGESFPQASLIIHIRRHTGEKPYKCDICDKGYPRSQDLMIHKRSHTGEKPHLCNTCGKAFSRPNKLARHIRVHTGERPYKCTQCSKAFAQSNDLNLHIRRHTGEKPYKCGICYEGFINGTALKNHRKSAKHFSIEDQRPDRYEKIRVTNPHRPCWRTKLNGHESASSQKDEESISKNIESLEEALDPWENNEESNENDDNISVKSNNSLLTPILDPEVSNCKTEFQTNQLDECGDIEKNPETILEQNDEKNESERHNYACNQCDRTYARKKNLDKHVKAHKDLEEGIRKPPEKFGICPHCGENFPQKSLPVHIRRHTGEKPFGCDQCEMRYVRRQDLIVHKRCHTGEKPHICLTCGKAFSRANQLVRHIRVHTGERPYKCNRCDRGFAQRNDLNLHIRRHTGEKPYECGICGESFINGTTLKNHRKIADHYEEERRDRFEKIRVTNPRRTYRATPLPKQPQVPFVLIIVTEKVINCEENVDKLETLAIDFQEEAGETQISSSDWNDDPEKNLELIQEILQKSRSENPSKKQTFPCEHCGHSFKRKANYLRHQLQKHPEGKINTNEDKYGICPYCGESYAKSSLSLHIRRHTGEKRYKCDMCEKAFVELHDLKRHKRMHTGEKPYVCLTCGMAFTQQSRLTRHKLVHTGERPYKCDRCDSAFTQNNTLKLHIRRHTGERPYVCGVCDQGFISGTLLRKHKKMESHYEDIHKGGLEKTSQSKPTCSKPNHNGEDEIKVTDRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -