Basic Information

Gene Symbol
retn
Assembly
GCA_951217065.1
Location
OX578272.1:98341281-98386306[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.2 8.2e+03 -1.1 0.0 41 65 96 121 91 130 0.76
2 2 3.2e-26 2.1e-22 81.0 0.0 2 89 265 350 264 350 0.96

Sequence Information

Coding Sequence
ATGATATTTGGCTACCGAATCGTTAGAAAGTATGGACAAATTATTGGTCAACAGGACCCTTTAAAGtccaACGACGAACACTCTGAGGACGACATGAGAGACTGTGAATCAATGGATGACGAAAACGCCAGCCGATTAAACGCCTCAATGGTCAATGGAATGACTATGGAGTACGTAGGAATGGGAGGTGGCAGGAGCCCCGAACAACACAATTCAGAAATTCCAATGAGTCACCATCATGCACAATTCGCTTCGAATCATCCGCTTGGTGCGCTGGGGAACTTTATGAGCATGGGCGGTTTGCATAGCATGCCAAACTTGCAGCAACAGCACAACGATGTGCTGGAGAAATTGAAAATGCAAGTCCGCGATATGAAAGTAGGTTTAATGGATCAAGAGTACCCACCACATGGTAACTTCGGCTCAAATGTCATTCCAACCCCCATCAATACGGCATTCACAATCCCGCCAACTTCACACAATTCATTCAATCACTCCCCGGAGAATTTATCCCAACAGTCACCTCAGCCACAGCAGCAAAATATGCTTTCGTCAACGcaccaacagcagcagcatTCACAGCAGTCGCAATCACAAACAATTTCCCAATCGATGTCAAATAGTTTCTCCTTCACGTCTCCCTCAGCTCCAAGCACAAAAGACGTAAATCCAGCATCTAATTCATCAACGTCCAGCGAAACATCAAATTCCTCACAACAAAACAATGGTTGGAGTTTTGAAGAACAGTACAAACAAGTTCGACAGCTCTATGAAATCAATGATGACCCTAAACGTAAGGAGTTCCTTGATGATTTGTTTTCGTTCATGCAGAAAcgagGTACACCCATCAATCGTTTACCTATCATGGCAAAATCTGTTCTTGATTTGTACGAGCTGTACAACTTGGTCATTGCACGGGGTGGCCTCGTCGATGTGATTAACAAGAAATTGTGGCAGGAGATCATCAAAGGGCTGCATCTGCCATCGAGCATAACGAGTGCAGCGTTTACATTGCGCACACAGTACATGAAGTATCTATATCCATACGAatgtgaaaagaaaaacttgagtTCACCATCTGAACTACAGGCTGCGATCGATGGCAATCGCCGAGAGGGACGTCGTTCCAGCTACGGTCAATTTGAGGCAATGCACAACCAGATGCAAATGtcTCCAATGGGAAGAAGTAATCTCCCCGGTGCAATGCAACAAATGTCCCCACTCGCTTTGGTAACACATAGCAATCCACAAGCGGTAGCTGCAGCAGCCGCACACCACAGACTGATGGCACCATCATTTGGTCAGGTGCAGGTCCCCAACTTGGTTCAACATGAAATTGAACAACGCATGATGGAGTATTTAAAATTGATTCAAGCAAAAAAGGAACAACCCCGCCCCAGATCTCAAAGTCCAGAAACTACAACCCGCGATGCTTTAAATGCACTCGAAATGTCTCGTGTAGCTTTATGGTCAATGTACCACAACAACACAAGTCCACCAGCTTCTGTTAATACTTCACCACAGGGAGTTGAACCACAACGTGAGGCGCTAAACCTTTCGGACTCACCACCAAATATTGCTATTAAACGAGAGCGAGAAAGAGAAACTTCAGAATTGGGCGCAAATTCGGATAGAGAAGATTTCCATCAACCACCACCGGCTAAACGAGGATTCACACCTAATATGTATGTTCCTGCAGTTCGGAGTAATTTTCATGAGGAAAATAATCACAACGTTGAAGATACTCACCACACATCGGCTATTACATCTCTGGACCAATTGGAGCTACAAAACCATGATATGACAACGAAAAAGCATACCGAAATAAATGGTCATCTTTCGCCGGTGATAGAGTCTTCACctaaaaaacttaattcaagTTATATCAGCAACGAAGAAAACGACAGCGTTCAACAAAGCCGGCTGCAGGTCAAGCTAGATAAGGAATCTAATCATGTTATAACGAATGCAGAGTTGTCACTCCTTTCGGGGATGCAGTTTAAATTGTCTCGAAAATCTACCGGCACCAATGGAGAACAACAACTCGTAGTCAACCTGGAACTTAATGGAATTAATTACGAAGGTGTACTTATAGCCAATCCTACCTTAGCTCAAAATACGGTTTCAACTACAAATGCATCAACACCATCCCTTCCAGTACCACTCCCAGCCAGTCTTATTTCAAATGGAACAAGTGATGTCCAGAAAAAACATCGCATAGATGAAAGACCGATGCATCTCATACAACCCTAA
Protein Sequence
MIFGYRIVRKYGQIIGQQDPLKSNDEHSEDDMRDCESMDDENASRLNASMVNGMTMEYVGMGGGRSPEQHNSEIPMSHHHAQFASNHPLGALGNFMSMGGLHSMPNLQQQHNDVLEKLKMQVRDMKVGLMDQEYPPHGNFGSNVIPTPINTAFTIPPTSHNSFNHSPENLSQQSPQPQQQNMLSSTHQQQQHSQQSQSQTISQSMSNSFSFTSPSAPSTKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPSELQAAIDGNRREGRRSSYGQFEAMHNQMQMSPMGRSNLPGAMQQMSPLALVTHSNPQAVAAAAAHHRLMAPSFGQVQVPNLVQHEIEQRMMEYLKLIQAKKEQPRPRSQSPETTTRDALNALEMSRVALWSMYHNNTSPPASVNTSPQGVEPQREALNLSDSPPNIAIKRERERETSELGANSDREDFHQPPPAKRGFTPNMYVPAVRSNFHEENNHNVEDTHHTSAITSLDQLELQNHDMTTKKHTEINGHLSPVIESSPKKLNSSYISNEENDSVQQSRLQVKLDKESNHVITNAELSLLSGMQFKLSRKSTGTNGEQQLVVNLELNGINYEGVLIANPTLAQNTVSTTNASTPSLPVPLPASLISNGTSDVQKKHRIDERPMHLIQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00314926;
90% Identity
-
80% Identity
-