Basic Information

Insect: Automeris io
Gene Symbol: -
Assembly: GCA_036320925.1
Location: JAUDJH010000022.1:10563182-10582877[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00016 0.012 16.7 1.3 1 23 296 319 296 319 0.97

2 9 0.014 1.1 10.6 1.0 2 23 327 348 326 348 0.96

3 9 8.1 6.1e+02 1.9 6.4 1 19 352 370 352 374 0.90

4 9 0.0002 0.015 16.4 1.7 2 23 380 401 380 401 0.98

5 9 0.0019 0.15 13.3 1.0 3 23 407 428 405 428 0.95

6 9 0.19 15 7.0 0.4 3 20 444 461 442 463 0.93

7 9 0.00046 0.035 15.2 1.9 2 23 494 516 493 516 0.93

8 9 4.3e-05 0.0033 18.5 1.2 1 23 568 590 568 590 0.99

9 9 8.6e-06 0.00065 20.7 0.8 2 23 597 619 596 619 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00016	0.012	16.7	1.3	1	23	296	319	296	319	0.97
2	9	0.014	1.1	10.6	1.0	2	23	327	348	326	348	0.96
3	9	8.1	6.1e+02	1.9	6.4	1	19	352	370	352	374	0.90
4	9	0.0002	0.015	16.4	1.7	2	23	380	401	380	401	0.98
5	9	0.0019	0.15	13.3	1.0	3	23	407	428	405	428	0.95
6	9	0.19	15	7.0	0.4	3	20	444	461	442	463	0.93
7	9	0.00046	0.035	15.2	1.9	2	23	494	516	493	516	0.93
8	9	4.3e-05	0.0033	18.5	1.2	1	23	568	590	568	590	0.99
9	9	8.6e-06	0.00065	20.7	0.8	2	23	597	619	596	619	0.97

Sequence Information

Coding Sequence: atgccTGAGCTTAAACTTTGCCGTGTGTGTTTACGGACTACTgtcaaaatgtataaatatgataaatataaattaaagcttTATTACGAAGAAATTCTCGCTGTAGAAATTAATCAGTATGATAATCTGCCCAAATACTTCTGTTATGAATGTGCAACTCTTCTACATAAATTCCACAAGTTTAAGGAGAAGTGCCAAGCAGGAGAAATGGCACTGAAAGAGGTCCTGTGGAAGGGAAAAATACCACTTGATGGCGTATCCAAATTAAAAAGAAGAAATTTAAATCTCCATCCTCAACTAGCTATAGTAACTGCAAGTCCTAATGTCAGAACATATATAGAAAAGCACAAGAATCTATTAAAACctaaaataagaattaaaagcTTGCAAGAACCTGATCCTCCTCAACAAGAAATTGTAAATGTGCAAGTGGATATTCAGGTAGAATCAGCTAAAGACAATGAAGATAATTTCGAACCTGACTTTGATGTCAGTACTGAAACTGATATAAAAATCACAGATGTTAATGAAGAAGATAAACCTTCAGAAGCTCCGGTTTTAGATGATATTGATTGTGATGATAATGATACTTGTAATGATGAAGCAGCATGTGAGGAACCTTATGATGAAGTAAAAGAAATTAGTGATGATTTTAAAGATGAGGAAAACATAATTACGCAAgaagataaaaagaaaacaaatgttgattttaaattaattaaaaagaagaaaatcattATATCAGACGCAAATAGATTTAAATCTAGAGTGAAGAAGACTCAAGAGTTGGACTCAAGGAATTGGCAGAAGTTTAATTTGTCGGAAGAGGAGGCAGTTAAAGAATTTCAGGAAAGAGCTCTGGATCCTAAGTATGTAAATGCTGTGTACAAATGCACTGGATGCTTGAAGGGCTTCTCCAAAGAGGATATGATGAAGAGACATATAAAATTAAGGCACAGCGAGTCAAACGGTTCCGTGGAATGCAGATTCTGCCGTATCAGATTCAAGTGGAAATCCCTTCTCAGTCGACACATCCGAGAGCACTACAACAAGTACAAATGCTTGCGTTGCGACCTCACATTCTGCAGAGAgACTTCGGCGCATCATCATGATCAATACCACAACGGAGTCATTAGAACGTGCGAGTACTGCGGCGATGTATTCAcGCATCCGTCGACATATTACACGCACTTACGCAAGCATAGGAGCAAACATTTGTGCACGCTCTGCGGGGAATCATTTGTCAGTGAGTTCGGGCTGTACATGCATCGCAGGGTTAAACACATCATGGACAGCGAGAAACAGGACAAACCCGAAGAAACCACGTTCTGCGAGCGTTGCGATGTCAAATTCGAAACGAGGAAAGCTTATGAGGAACATCTAATACATTCTGCGATGCATTCCGGTACAGAAGAGACACCTGCTATGATGAACTTCAAGGCAGGCTCCGTCACGCGCAGGGCGCCTAGAAAGCAGACATCGTGCAAAATTTGTAATAAGAATTTCTCAACCCTGGTCGCGTACACGAAACACCACCAGGCGGAGCACCCTGAGGCTCCGCTGCCGCTCTCCGCCAGTGGGAAACCCAACTCCTCATTCTACGCGGCGCAGAGCCAGAAGCAGGTCTGCGAGATTTGCGGAGCCTTGCTCGCGCCAAACAGTATCTACAGTCACATGAACACACACACGCGGCAGCGGCAATACACCTGCACGACGTGCGGCATGCAATTCAACGCCAAGGGCACGCTGCAGAGGCACTACCTCacCCACACAGGTGAAAAGCCGGTTGAATGCACTCTCTGCGATAAACGTTTCACGCAGCAGGCCAGCATGAAACTGCATTACAGAACTATACATCTCAAGCAACCCTATCCGAAACGaaatagaaagaaaaagaatgAAGAGCAAGAGGAAGGAACCTTGTTATCAGAGTTTTACCACAATAATGATGGTTCGGATGATATGCCTTTAGACAGATGGAGAACTCTCAGGCTGTAA
Protein Sequence: MPELKLCRVCLRTTVKMYKYDKYKLKLYYEEILAVEINQYDNLPKYFCYECATLLHKFHKFKEKCQAGEMALKEVLWKGKIPLDGVSKLKRRNLNLHPQLAIVTASPNVRTYIEKHKNLLKPKIRIKSLQEPDPPQQEIVNVQVDIQVESAKDNEDNFEPDFDVSTETDIKITDVNEEDKPSEAPVLDDIDCDDNDTCNDEAACEEPYDEVKEISDDFKDEENIITQEDKKKTNVDFKLIKKKKIIISDANRFKSRVKKTQELDSRNWQKFNLSEEEAVKEFQERALDPKYVNAVYKCTGCLKGFSKEDMMKRHIKLRHSESNGSVECRFCRIRFKWKSLLSRHIREHYNKYKCLRCDLTFCRETSAHHHDQYHNGVIRTCEYCGDVFTHPSTYYTHLRKHRSKHLCTLCGESFVSEFGLYMHRRVKHIMDSEKQDKPEETTFCERCDVKFETRKAYEEHLIHSAMHSGTEETPAMMNFKAGSVTRRAPRKQTSCKICNKNFSTLVAYTKHHQAEHPEAPLPLSASGKPNSSFYAAQSQKQVCEICGALLAPNSIYSHMNTHTRQRQYTCTTCGMQFNAKGTLQRHYLTHTGEKPVECTLCDKRFTQQASMKLHYRTIHLKQPYPKRNRKKKNEEQEEGTLLSEFYHNNDGSDDMPLDRWRTLRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -