Basic Information

Insect: Automeris io
Gene Symbol: -
Assembly: GCA_036320925.1
Location: JAUDJH010000005.1:377396-378481[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00055 0.042 15.0 0.4 2 21 104 123 103 124 0.94

2 9 5.7 4.3e+02 2.4 0.2 3 23 130 149 129 149 0.84

3 9 6.7e-05 0.0051 17.9 0.1 1 23 154 176 154 176 0.96

4 9 0.0022 0.17 13.1 0.7 3 23 182 202 180 202 0.90

5 9 0.0025 0.19 12.9 1.7 3 21 207 225 205 226 0.93

6 9 0.12 8.9 7.7 0.7 1 21 237 257 237 260 0.80

7 9 6.6e-05 0.005 17.9 1.4 1 23 266 288 266 288 0.98

8 9 6.8e-05 0.0051 17.9 0.7 1 23 295 317 295 317 0.98

9 9 0.00027 0.02 16.0 1.8 1 23 329 352 329 352 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00055	0.042	15.0	0.4	2	21	104	123	103	124	0.94
2	9	5.7	4.3e+02	2.4	0.2	3	23	130	149	129	149	0.84
3	9	6.7e-05	0.0051	17.9	0.1	1	23	154	176	154	176	0.96
4	9	0.0022	0.17	13.1	0.7	3	23	182	202	180	202	0.90
5	9	0.0025	0.19	12.9	1.7	3	21	207	225	205	226	0.93
6	9	0.12	8.9	7.7	0.7	1	21	237	257	237	260	0.80
7	9	6.6e-05	0.005	17.9	1.4	1	23	266	288	266	288	0.98
8	9	6.8e-05	0.0051	17.9	0.7	1	23	295	317	295	317	0.98
9	9	0.00027	0.02	16.0	1.8	1	23	329	352	329	352	0.97

Sequence Information

Coding Sequence: ATGGAGACGTCTGCTATTCTCCCAAATAAAACATGCAAGGAATGTCTCAAACATATCAAGGAATTCGTCCCATTCATTCAACTGTGTATGGAATCTATAAAACAGTGGAATAATATATCCATGTCTTTAAAAGACGTAAAAGTCCCTCAAAGGTCGAGAAGCATATACGTAATTGTTGATAACCAAATGCGGGTTTACACCTCGTCCAAATCATCAAGCAGCGCCAGAGATGCGTCGCGTAACTTTAGAAAGCTAAATATGAAAAGATACGAAGCAGCGAATTCAGGCCACGTAAAACAAGGAAAGATGGTGTGTCCAGAATGCCATACAAGCTTTAGTAAAGTTGTCCAATTTAAcacacacataaaaaatattgggAAGAAAATGTGCGTAAGATGTAATGCCGTTACAGACTTAAATGCGTATGCGAAACATCTGAAAAGCCATCAAACGGCGGTCTTCCCGTGTGAAATATGCCCTGAGGTATTCGGTAGAGAGTCTTCATTGAAGCTTCACTCTATAAAGCATAAAGATAAACACGCTTGCATCGAATGCAAGCTTACCTTCACGACTCCCACTAACCTTGCCGCGCATTTTATCAAGCACAAGCCCGTCATCTGTTCCGGCTGCAAAAGAAAGTTCTCGAACAAAATCTGCTTCCAACGCCACGGTCGCGATTGCCCGAACATCAACGAAAACTCGACGAAATATATCTGCGATTATTGCTCCAAGGAGTACAATAGAAGGAACGGGATAAAGTTTCATATAATTCAAAACCATTTGACGGGAAAACAGTACCAGTGTGAACAATGCGGGAAAAGGTTTCTTAACCGCGTCCATTTGGAAGAGCATGGGAACACACACGAGAAAGTTACAGACAGATATGTGTGTGAGAGTTGCGGCGCGAAATTTAGCTCGAGGAGAGGCTATGAAAGACACGTTAAGAAGCACAACAAGACATTACATAATGAGGGAAAATTGAAATATTCCTGTCCTATATGTAGGAAGATATATTATCAGAAGAAAAGCTTTGATAATCATTTGAAAATTAAACACGGTGATACGAATGGCATACCTGTTGTATAA
Protein Sequence: METSAILPNKTCKECLKHIKEFVPFIQLCMESIKQWNNISMSLKDVKVPQRSRSIYVIVDNQMRVYTSSKSSSSARDASRNFRKLNMKRYEAANSGHVKQGKMVCPECHTSFSKVVQFNTHIKNIGKKMCVRCNAVTDLNAYAKHLKSHQTAVFPCEICPEVFGRESSLKLHSIKHKDKHACIECKLTFTTPTNLAAHFIKHKPVICSGCKRKFSNKICFQRHGRDCPNINENSTKYICDYCSKEYNRRNGIKFHIIQNHLTGKQYQCEQCGKRFLNRVHLEEHGNTHEKVTDRYVCESCGAKFSSRRGYERHVKKHNKTLHNEGKLKYSCPICRKIYYQKKSFDNHLKIKHGDTNGIPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -