Aio005673.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Automeris io
Gene Symbol
-
Assembly
GCA_036320925.1
Location
JAUDJH010000005.1:11468930-11483511[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00054 0.041 15.0 3.0 1 23 302 324 302 324 0.99
2 12 0.0071 0.54 11.5 4.3 1 23 332 355 332 355 0.94
3 12 0.68 52 5.3 0.3 1 23 359 382 359 382 0.92
4 12 0.0034 0.26 12.5 1.8 1 23 457 479 457 479 0.99
5 12 0.00038 0.029 15.5 1.6 2 23 488 510 487 510 0.96
6 12 3.7 2.8e+02 2.9 4.2 1 23 514 536 514 536 0.98
7 12 0.0005 0.038 15.1 1.4 1 23 541 564 541 564 0.97
8 12 0.6 46 5.4 1.6 3 23 570 591 569 591 0.86
9 12 0.63 48 5.4 0.1 3 23 685 706 683 706 0.88
10 12 3.6e-06 0.00028 21.9 1.2 1 23 715 737 715 737 0.98
11 12 5.6e-05 0.0043 18.1 0.8 1 23 743 765 743 765 0.97
12 12 6.1e-06 0.00046 21.2 2.6 1 23 771 794 771 794 0.98

Sequence Information

Coding Sequence
ATGTTAGAACTGAAAGTTTGTTTAGTATGTCTTACTGCAGACGTGAAGTTACATAGTCTAAAAGAAGGCAATTTGAGACGAGATTATAATTTGGTATCCGGTCTTCATACTCGATCAGAAAATGGTTTGCCGGagtttttatgtgtattttgtGTAGCATACATACGACGTTATGTTAAATTTCGTGAGAGATGTCAAAGAACACACTTTGCTTTACAAGAATTATTACAGAGAAGTAAACAAataaaaaaatcacatttatcATCTTTTGATAAGAAAACATTTGGTATATTGCCCCAACTATCATACATGGTCTCTCAAAGACTATATTATGAACAAGTTAAATTTCAATGGGTAAAACACAACAGGCTTCCTGTTACAACTGGGGATCAAATACCCATTGCCCACTACAGTACTTTAACAAATCAGGATACATTTGTTGATATAGCTGTATGGAACAGTTCCGATGCTGAAAACATTGTTAAAAGTGAAGAAGATGATGTAAATTGTGTTAATAATAGAGGTCATGCAAATAATTTTGTAGAACCGTCCACACAGGCAATTCAAATAAATACAGACAATAATGTAGCAACTAGTGATGATTATTTTGAAGAATCTCATTTTGATGACTATACTGAATTTGAAGATCATAATGATGCTACAGAGGTTGAAGAACATAAAGAAAATACTGAAATTGAACATCATATAGATAATACTGTAACTGGAAACTGTAATGATGTTAAtatgattgaagaaaataaTGACAATTTGACAGACACATTTAGAAGAGATAATGAAGTGGATGGGTCTAAACTTGAAGAGGAATATGCTAGTATATTTCCAATTTCAGTGAAGGAGGCCAAAGCAGCATTGGAAGTTTACAAAATGTTTAGTAATGGAAAATACAAATGTGATGTTTgtcataaacaatacaaaaatgaAGAAAGGTTAACCGTACATTCCAGAATGCATGATAAACACACAAGTGGTAATTATCATTGTAAGCTCTGTGATTACTTTTACAAAACGGAATTTTTACTCCAAACTCATATGACTGAAAAGCATATGTACAAATATGTGTGTAGGAAGTGCCCAGAAGTCAGTTTTGATAgaACATCAGCTAAGCAACATTACATATGGTCACATCTTCAGAAAGGTCAAAAGAAGAACGCTAACTGGTACGAAACGCGGCCAAGTTGGCTCAGCGGGAAAGGTGGAAAGAGAGTAAAAGGAGTGGTCACATTGCGGCCGGTTAGAAAGATGAAGAACTTACCTGAAGACTTTTTAATATACAGTCCGATCGGTCACGAGGAGCAGTATCAGTTGGTAGAAGACAGGAAGAAGACTAGCAACTACACAGATTCAATGTTTAAGTGTGAGTTGTGCTTTAAAGGATTTCGCGAAGTAGGCACTTACGACAAACATATGAAGAAACACAATCCGGAATATTCTGGAAACCTGCAGTGTGATATGTGCAAACTATACTTCAAAGATCAGAGGAAACTGTACAAACATATGAACATATCGCATCTCTTCAAATACTCTTGCCGATTATGCAgctttttttgtgttaatagAGGTCAGGCTCATGCACACTATAGGTGGCATAAAAACGTAACATATCCCTGTCAGTACtgcgaaaaaatatttaaGAAATTATCGACTCGTCTAACGCACATAAGGATAAAACATCCCTCTACAAATATCTGCAACTTATGCGGGCACAGCTTTGTCAGTGAAACTGGCTTATACTGTCACAAGCAGATAGCGCATAGTTTAGAGGAGCGAGAAATGAGCAAGTCGGTGCCTGTTAACACTACCGATCCTTGTTACTGCGCAGAGTGCGGCGTGTATTTCCTCAACGATATCGCCTTTGCTACGCACCTCGGCAGCTCTAGCAAACATGCCTCCGTAAACCTTTCAATAAATCCGGGTCGCAAGCACGAGCTGATACATAAGAGGGAGAACGAAGACGTGAAGAAGAGGGGGCGGCCGCGGGCGGGAGGCGCGCGTTCCGAGGTCGTCAACAACGGTGTCAGCACATCCACCAACTGCGAAgtgTGCGGTAAGTTCCTGGTGAACGACGTGCAAGCCCGCAAGCACTACGAGGCGGAGCACCCCGGCACCGACTACCTCAAGCGGTACATGTGTGACGTCTGCGGGCACACCACCAGgcAATACGCGAACTTGATGGTCCACATGCGTACCCACACGCACGAGAAACCGTACGAGTGTCCGCACTGCGACAGGCGGTTCAGCATGCCAAGCAATAGAGATCGACATCTCGTTGTACACACTGGCGAGAAACGGTACCAATGTCAACATTGTAACCGTCGCTTCACGCAGAGCAGTGCAGTCAAGCTTCACATACAGACGGTTCATCTGAAGATACCGTATGCGCCCTGGGATAAGAAGAACAGGAAGAGGCGTAAAGAGGTCGACGGCACTGTCGCGCCTGTCCCCACCGTGCTCACAGCCAACCCTGGCTACCTCCCCCCACAGCACAAGCTGCTGCTCGACACTCAGGGCGATTACCTCAACGCGTACATCTCCTATAACGACGACTGA
Protein Sequence
MLELKVCLVCLTADVKLHSLKEGNLRRDYNLVSGLHTRSENGLPEFLCVFCVAYIRRYVKFRERCQRTHFALQELLQRSKQIKKSHLSSFDKKTFGILPQLSYMVSQRLYYEQVKFQWVKHNRLPVTTGDQIPIAHYSTLTNQDTFVDIAVWNSSDAENIVKSEEDDVNCVNNRGHANNFVEPSTQAIQINTDNNVATSDDYFEESHFDDYTEFEDHNDATEVEEHKENTEIEHHIDNTVTGNCNDVNMIEENNDNLTDTFRRDNEVDGSKLEEEYASIFPISVKEAKAALEVYKMFSNGKYKCDVCHKQYKNEERLTVHSRMHDKHTSGNYHCKLCDYFYKTEFLLQTHMTEKHMYKYVCRKCPEVSFDRTSAKQHYIWSHLQKGQKKNANWYETRPSWLSGKGGKRVKGVVTLRPVRKMKNLPEDFLIYSPIGHEEQYQLVEDRKKTSNYTDSMFKCELCFKGFREVGTYDKHMKKHNPEYSGNLQCDMCKLYFKDQRKLYKHMNISHLFKYSCRLCSFFCVNRGQAHAHYRWHKNVTYPCQYCEKIFKKLSTRLTHIRIKHPSTNICNLCGHSFVSETGLYCHKQIAHSLEEREMSKSVPVNTTDPCYCAECGVYFLNDIAFATHLGSSSKHASVNLSINPGRKHELIHKRENEDVKKRGRPRAGGARSEVVNNGVSTSTNCEVCGKFLVNDVQARKHYEAEHPGTDYLKRYMCDVCGHTTRQYANLMVHMRTHTHEKPYECPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKEVDGTVAPVPTVLTANPGYLPPQHKLLLDTQGDYLNAYISYNDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-