Aio021571.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000024.1:8440879-8461057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00048 0.036 15.2 0.6 1 23 318 341 318 341 0.98 2 10 1 80 4.7 1.3 1 23 373 395 373 395 0.95 3 10 0.84 64 5.0 0.2 1 22 427 448 427 450 0.79 4 10 0.04 3.1 9.1 0.2 2 21 468 487 467 492 0.92 5 10 2.9e-05 0.0022 19.0 0.3 2 23 518 540 518 540 0.96 6 10 0.13 10 7.5 1.4 2 23 564 586 563 586 0.97 7 10 0.00028 0.021 15.9 0.0 3 23 598 618 596 618 0.96 8 10 6.6e-05 0.005 17.9 1.8 1 23 624 646 624 646 0.98 9 10 0.0003 0.023 15.8 3.3 1 23 652 675 652 675 0.97 10 10 4.1e-06 0.00031 21.7 0.2 1 23 681 704 681 704 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGACAAAAATTTGCAGAATTTGTCTTGCGATGGATGTTAAAATGTTTGACTTGCGAAAACAacccttaataaaatatttggaacAGATTATTGGAGCAGatAGTACGAGCATGGAGGAGCTTCCACCATTTGCATGTTTCGAGTGTGCTGCGCTGATGGAAAAGTATTATAACTTCAGTGAAAAATGCCTTCAAACAGAGactattttatatgaaattctGTATAAAGATGGAATGATAACAAAACAACAAGTTCAACAAATAAACCGGGATAGTTTAAAGGTAACTAACAATACTATACATAACATATCACAAGATGAAgttattcatcataattatgaTGAAGAAAAGTTTACTGAAATCACTGAGGAATCAGATGATTTAGAGAATGACAACAGCAAGGTTAAAATGGAAGAGACTGATGAACAAGTAAATTATTTGGATGATGTCTCTGAGCCACTATTCTTGGATATTCAACAAACagaattgataaaaaatgaaGATGTAAATATCATAGAAGAAATAGATGAAATAGATGTGAATGATATGAATTTAGATGACAATGATATGAATTTTGATGACAATGATATGAAATTAGATGACAATTCAATGGATTCCTTAGAGAATATTGAAtttaaagAAGATTCTTCAATTATAACCGTGAAGTCGGGAAATGTAAAATATGTTCTGAAGCCAGTTGTTAGaaagataattataaatccAACCAAGTTACCTGAATCAACTAAATCGAAACCAAAAGGAGGTGAGCTTAAGAGTTCAGATACTCCACGCAAAGCAAAgaccgaaaaaaaaattgttaaaagtgATGATCCATTTGACGATATACCTCTGGAAGAATATACAACTGCTATTAAATTTACTATGGAGGAACAAATAGAAGAGTTCGATAAGAGAAGAAAGTCTACTCACTACCAGAATTCTATATACAAATGCACCCTATGTTATATACGATTTCCTAATAATGCGGCTTTGGACCGTCACGTGAAGAGATACCATGATCCGAGACCTGGCTATGTGGAATGTCCAATTTGCAAGTATCAAATCATTAGCAAATACTCAACCCGCCACGCTCTCAGGCATGAATTAAGATACAAGTGCAAATCGTGTCCGCATGTGTCTACTACTATAGACAAGGCGAAATTGCATGAGAAATGGCATAGAGGTGTGACGTATACGTGTAAACACTGCGGGGATGTTAAAAAGCGATGGACCTCGCACCTCAGCCACCTTCGTATAAAACACCCTTCAGAATTTATTTGCGAAATTTGTGGAAACTCGTTCCTTAGCCTCCGCGGCGTAAGGCAGCACAAGGGCAGAATTCACGGTAAACTATctGATAAAATCGATACTGACGAAGGCAAAGATACCGGGACATACTGTGAAACGTGCAATATAAAGTTCACATCGGCGGAGGCCTTCGACACACACATCGCGAGCTCTATTAAACACACACAACCTGAGAACAGCTTGAGCAAAGAGATCATGACCAGCCCTAACAGGTGGAGACCGAAGAGGATGTCCAGAGTGTGTCGCTACTGCGGTGAATCCTTCAAAACTATAGACGACATGAGAACTCATCAGCGCGTTGCACACTTAAAGGAATCCGACATGAGGGAGATTTATAAGACGTACTCCCTCTTGAAGAAAATGACCTGGCCAACGAAATGCGATCATtGTTCACAAGAAATCTCTAATATCCGCGACTATTGGATTCATTTGAGACGTACGCACCCTGATATCGAACCTAAACCGAAGAATATTATTTGTGAGATGTGCGGGGAAGGATTCtcgAATATGAGTCTACTTGGCTACCATCAGCGCGTGCATTTGAGAGAGTTGGGCTTCAAATGTCCCACTTGTGAGAAGTCGTTCTACAGCAATATGGCGCTGCAGATGCACAAGAGCAAACATTGCGTCAAGCGCTGCTACCCTTGCACGCTGTGCTCGAAGACTTTCACGCTCAGGGGCAATTACTTGAAACATTTAAGACTGTGTCACAAAGGCATAAGGCAGCACAAATGCGAAATTTGCGGAAAGGCATTTGGGGAGTCGGCAAATTTGAGGATCCACGTTATGACTGTGCACTGCAAGCAACCATATGAGAAACGTATCAGAATCAAAAAGAACCAAGACGTAATTCCGAAAAGAAGATCTACAGCACTAgcgacaaaaaataaatattaa
- Protein Sequence
- MEETKICRICLAMDVKMFDLRKQPLIKYLEQIIGADSTSMEELPPFACFECAALMEKYYNFSEKCLQTETILYEILYKDGMITKQQVQQINRDSLKVTNNTIHNISQDEVIHHNYDEEKFTEITEESDDLENDNSKVKMEETDEQVNYLDDVSEPLFLDIQQTELIKNEDVNIIEEIDEIDVNDMNLDDNDMNFDDNDMKLDDNSMDSLENIEFKEDSSIITVKSGNVKYVLKPVVRKIIINPTKLPESTKSKPKGGELKSSDTPRKAKTEKKIVKSDDPFDDIPLEEYTTAIKFTMEEQIEEFDKRRKSTHYQNSIYKCTLCYIRFPNNAALDRHVKRYHDPRPGYVECPICKYQIISKYSTRHALRHELRYKCKSCPHVSTTIDKAKLHEKWHRGVTYTCKHCGDVKKRWTSHLSHLRIKHPSEFICEICGNSFLSLRGVRQHKGRIHGKLSDKIDTDEGKDTGTYCETCNIKFTSAEAFDTHIASSIKHTQPENSLSKEIMTSPNRWRPKRMSRVCRYCGESFKTIDDMRTHQRVAHLKESDMREIYKTYSLLKKMTWPTKCDHCSQEISNIRDYWIHLRRTHPDIEPKPKNIICEMCGEGFSNMSLLGYHQRVHLRELGFKCPTCEKSFYSNMALQMHKSKHCVKRCYPCTLCSKTFTLRGNYLKHLRLCHKGIRQHKCEICGKAFGESANLRIHVMTVHCKQPYEKRIRIKKNQDVIPKRRSTALATKNKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -