Aio005347.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Automeris io
Gene Symbol
RTase
Assembly
GCA_036320925.1
Location
JAUDJH010000005.1:5203330-5212875[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0017 0.13 13.5 0.1 1 23 749 771 749 771 0.95
2 10 0.13 10 7.5 0.2 3 23 796 817 794 817 0.92
3 10 0.0012 0.088 14.0 0.7 2 23 839 860 838 860 0.95
4 10 0.1 7.6 7.9 1.4 2 23 865 886 864 886 0.96
5 10 2 1.5e+02 3.8 0.9 5 23 896 915 894 915 0.81
6 10 0.08 6.1 8.2 0.9 1 23 921 944 921 944 0.96
7 10 0.0002 0.015 16.4 1.2 1 23 950 973 950 973 0.97
8 10 3.7e-05 0.0028 18.7 1.4 1 23 979 1001 979 1001 0.98
9 10 8.7e-07 6.7e-05 23.8 0.5 1 23 1007 1029 1007 1029 0.99
10 10 4.3e-06 0.00033 21.6 0.4 3 23 1037 1058 1035 1058 0.97

Sequence Information

Coding Sequence
ATGGGTGATTTTAACTGCCACCATCAGATGTGGGGTTCTCACCACACTGATATATATGCTGCTTCCTTGGTAGATATGCTTGATAGTGTAAATTTATGTGTGATCAATGATGGTTCTCCCACCCGCCGAGTCTACCCATCCCAAAATCGTAAGAGTGCAGTTGATATAACTGTATGCTCTCCCTCCCTTGCATCTTTGCTCTCCTGGGAGGTAATTACTGACTCCCATGGGAGTGATCATTATCCCATTATCATCACTCTCCCTGTTAGATCTCCTTCTAATCACAAACCCTTATCTACTAACACATTCAACTTACGCAAAGCAGATTGGTCATCATTCGCTGATTCCGTGGACTTTCATTTGGACCAGGCTCTCCCTCTTAACAGTGAGAACATCATACAAAGTTATGATTCCTTTGTATCCCTCTTACTCTCTTCAGCCAATGCTCATatcccaaaaaagaaaaaaaccctCCATTATAAGTCTTCCCCCCCTTGGTGGGATGATGAATGCACAGAGGCTGTCCGAGAAAGAAAGGAGGCTGAAAAAAGATACAATTCATCAATGTCTATGGATAATTTCCTTGCTTACAAACAGGTAGCGGCACGTACTAGAAGACTCCtgtctttaaaaaagaaaaatgggtGGATTactttttgtgaaaatttatcTCCTCTCACTCCACAGTCCATAATATGGAAACAAATTAAAAGATACAGGGGTGCTTACAACTGCATTAACATTCCTTCCAATGATGCTTCTGTTTGGCTGCATGAATTCAGTAATAAAATCTCTCCACCTTATGTTCCTCACTATGACTCTCTTCCAAAAGAAGGCTCCCCCATATCCTCTCCTCTATGTCAACCATCATTATCATGGTTAGATTCCAATTTCACTTGGGATGAATTACATCATGTCCTTAATAATTTGTGTGACTCTTCGCCTGGGGAGGATTGTATCCCCTATTCATTCCTATCTAGATGCAATAATAAAGCTAAACTATTTttccttgaaataattaattatttttatacatatagtattgtCCCAAAGACTTGGAAGTCCCAATTAGTTATTCCCATTCTTAAACAAGGAAAAGACCCGACCAACTTTTCATCCTATAGACCAATAGCTTTATCTTCTACGTTATCCAAAGTCATGGAACATATGATTAAAAACCGTCTTGAATGGCACATGGAAAATAATATGCTTCTTGCTAAGTCACAGACAGGATTTAGGAAAAGTATGAGTACTCTGGATAACTTAAGCATCTTAACAACTGACATCCGTcttgcttttaaaaaaaaggagatcCTTGTTGGGGTCTTTTTAGACATAGAATGTGCTTACGACAACGTCCTTCTTCCGGTGCTCAGGAATAAACTTATTCAGCTGAATGTCCCTGTGAAGATGACAAGCTTCATAAGCAACCTACTTATGGAAAGATCACTATCCGGAGTCTGGTGGGGATCCCatcctttttctcaaaaactcCTGTATAATGCCATCATCCGGAGCCATCTCGACTACGGGACATTCCTTCTAGATCCCTGTAACAAAGCCGCTTTATaCTCTAAAAGCTGCTTACAGTCTCTACTCTCCTTCCCCTTCCGCTCTAGAGCAAGACATCCGGTCCTTTTGAATATTAGAGAAGAACTATTGAATTGTTCCGTTTTGGGTCTGAACATCACTCTCGCCTGGATACCAAGTCACTGTGGCATAATAGGTAACGAATCCGTAGACTCATGTGCCAAAGCAGCAGTACGGTTGGGATCAATGGATCATTACAGGGTCTATTCTGAAGATTTATGTACACTAGCTAAAGCCGGATTACGTAAAGCGTGGCAAAGCGATTGGATTGTTTCAAAAGCCCGAAAGGACGGAGAGCCCGAGGACAGGCTAATATGTGCCACCTGCGTCACTCGACTTCGTGAGGCCACTGCTTTTAGGAAACAAGTGCTGGATTGTGAACAGAAGCTGCTACAAACAACCATGAACATGGATTTTGCAGACAGTGACAAAAATGGGCTGAAGAATGAATCAGAAGTGAAAAAGGAAATACAAGATGATGCAGGACTGATCCCAGAGAGTGATGTGGGGGAAGAGTATGCGGACTATATGGATGATGGTACAGAAGTGGAATCTCAGCAACCAGTACTAGATACCGAAGATAAATCGTTCCTAAATACAGCAACCTTAGTCGAGAACTCCTATGTCTGTCCATTCGACTCACAATTCAGTGACTACATCTGCATATACTGCAGACAGGTCTTTGTACAACCCGATGAACTGAGAGAACATACTTTGACACACTCCCCGGACACGTACAAGGACATAGTCGCCACATACAAGAAGCTATTGCAGCTAGACTTGTATAGATTGGACTGCAGATTATGTCCGAAGAGTCTGAATAATGTACAGTCCTTAAAGGAACACCTGACGTTGGATCATGGGAAAATATTTCATGACACATTGACAGATTTCCTAGGATTTAGATTAACGTTTAAGAATTTAAGTTGTACGGAGTGTGGGGCGGGTTTTAACTTCTTCCATGCTTTAAAGAAGCACATGGCAGAACATTTCGGGACGTGCATTTGCGATGTGTGCGGGGCGCATTACTTTGAAGAACGGATGCtgGTAGTCCATCAGAAGACCCACCAAAAAGTCGAACGAAGCTTCCCGTGCCACTGCGGGAAAATATTCAAATCCAAACAAGGGAGATACCTCCACGAAGCGAAGATACACAAGAAAGAACCGGTTTACCAGTGCAGCAAGTGCGAGGGAGAATTTTTCTCTTACTCTCTACGGTCTAAACATATGATGGAGGCACACGGGGACAGGAGATCATTCCCCTGCGAGCGGTGCGATCGCGCCTACGTGAGTCGGAAGTCTCTCAGGGAGCACACCAGGCGGTTCCATCTGAAGGTGCTCAAGCACCAGTGCGAGGTGTGCGACAAACGGTTCTACCTGCCGTCGCGGTTGAAAGAGCACATGGCGACACACACGGGCGAGAGGAATTATCGCTGTGAGTACTGCGGCAAGAGCTACCCGAGGCTTCGAGGCCTAAACGTCCACATGCAATCGCACAGCGCCGACAAGCGGTATGGCTGCCCCGTGTGCAGCGCTTCCTTCACGCAGAACGTCAACCTGAGGAATCATATGCGGAGGCAGCATCAGAGCCTCGAGGTGGACTACCAGGAACAATAA
Protein Sequence
MGDFNCHHQMWGSHHTDIYAASLVDMLDSVNLCVINDGSPTRRVYPSQNRKSAVDITVCSPSLASLLSWEVITDSHGSDHYPIIITLPVRSPSNHKPLSTNTFNLRKADWSSFADSVDFHLDQALPLNSENIIQSYDSFVSLLLSSANAHIPKKKKTLHYKSSPPWWDDECTEAVRERKEAEKRYNSSMSMDNFLAYKQVAARTRRLLSLKKKNGWITFCENLSPLTPQSIIWKQIKRYRGAYNCINIPSNDASVWLHEFSNKISPPYVPHYDSLPKEGSPISSPLCQPSLSWLDSNFTWDELHHVLNNLCDSSPGEDCIPYSFLSRCNNKAKLFFLEIINYFYTYSIVPKTWKSQLVIPILKQGKDPTNFSSYRPIALSSTLSKVMEHMIKNRLEWHMENNMLLAKSQTGFRKSMSTLDNLSILTTDIRLAFKKKEILVGVFLDIECAYDNVLLPVLRNKLIQLNVPVKMTSFISNLLMERSLSGVWWGSHPFSQKLLYNAIIRSHLDYGTFLLDPCNKAALYSKSCLQSLLSFPFRSRARHPVLLNIREELLNCSVLGLNITLAWIPSHCGIIGNESVDSCAKAAVRLGSMDHYRVYSEDLCTLAKAGLRKAWQSDWIVSKARKDGEPEDRLICATCVTRLREATAFRKQVLDCEQKLLQTTMNMDFADSDKNGLKNESEVKKEIQDDAGLIPESDVGEEYADYMDDGTEVESQQPVLDTEDKSFLNTATLVENSYVCPFDSQFSDYICIYCRQVFVQPDELREHTLTHSPDTYKDIVATYKKLLQLDLYRLDCRLCPKSLNNVQSLKEHLTLDHGKIFHDTLTDFLGFRLTFKNLSCTECGAGFNFFHALKKHMAEHFGTCICDVCGAHYFEERMLVVHQKTHQKVERSFPCHCGKIFKSKQGRYLHEAKIHKKEPVYQCSKCEGEFFSYSLRSKHMMEAHGDRRSFPCERCDRAYVSRKSLREHTRRFHLKVLKHQCEVCDKRFYLPSRLKEHMATHTGERNYRCEYCGKSYPRLRGLNVHMQSHSADKRYGCPVCSASFTQNVNLRNHMRRQHQSLEVDYQEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-