Aio010214.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- Sall1
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000010.1:2434963-2449841[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5 2.7e+02 3.0 0.3 2 23 6 27 5 27 0.95 2 13 0.18 14 7.1 2.7 1 23 1014 1037 1014 1037 0.93 3 13 8.2e-06 0.00063 20.7 2.5 2 23 1141 1162 1140 1162 0.97 4 13 0.0073 0.56 11.5 2.2 1 23 1168 1190 1168 1190 0.98 5 13 0.0067 0.51 11.6 3.4 2 23 1197 1218 1196 1219 0.95 6 13 0.23 17 6.8 2.2 5 23 1232 1250 1230 1250 0.97 7 13 0.00036 0.027 15.6 1.9 2 23 1256 1278 1255 1278 0.96 8 13 0.015 1.1 10.5 0.1 2 23 1295 1315 1294 1315 0.97 9 13 8.8e-05 0.0067 17.5 0.5 1 20 1321 1340 1321 1343 0.92 10 13 0.00091 0.069 14.3 1.5 1 23 1351 1373 1351 1373 0.98 11 13 0.0095 0.73 11.1 7.0 1 23 1379 1401 1379 1401 0.98 12 13 1e-05 0.00077 20.5 1.4 1 23 1407 1431 1407 1431 0.97 13 13 0.00038 0.029 15.5 4.3 1 23 1437 1459 1437 1460 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGCTGGTGCAGTGCCCCGTTTGCACGCTTTATCTCCACAATGGGATGACTTTGGAATCCCATTTGGAAACTCACCCCAAAGATCAGGTCATCAAGGCTCTTTGTAGTCTTGCATCAGGCAAAGGAAGTTATGCCAGTAGAACATCTTCACCTATACACTCTGAACGCTCATACAGGAGCAGGTCTCGCACTCCTGCTGTTGAGGACAAGTGGAATGGATCTCATCGGTCAGGTGAACATGATCGATACTGGAGACGAACACCTAGTAGAACTCCTAAGTCTACTTCATCCACAAATATCTCAAGAAATGGTACTCCAGATATGAAAATGGATGTAAAAATGGCTGATAGTATATCTATTGGCAGTAGTTCATCAAGTGGACAAAATTCTCTCTCATCATATGTTTTGAAACCAGACAAAATGCAGCCGACTTATCAGAATAGTCCCATATCAGATTTTGAACATGTGAGTGGTTTTTACCAAGATCCACATGAtgataaagaaattaaattttctcGGAGTGTAGAGTATAATCCTATGGATAGTGGCAATGGTGTTTACACTTATAATATGCCCAGCACTGGTACAGGGCTAAGGTATCCCAATCATAACAGTTTACTATCAAACATACCAGGTAAGAAGGGTTTTGTAAAGTTTGTACAGAAACcaaacaatgtttttattaaaagtgatGGAAGTGCTATGCAGTACTTGCCTGGGACTAAACCATTGCATTTGATGGTACCAGGTGCACAAACATTTGTTCAAAGAAATATGCAGAACAATATGATCATTCCTGCTGGTATATCACAGTCACAAATGCAAATAGACGCCAAAAGCATGTCTCCACAGTTGGCTCCAAATCAGTTTAATCAATTACCTGCTGCAACTTACACTCCGGGACTATCTACTGTAGTAACCCAAAACTCGCAAATTATATATAGAGAGATGCTACACAATGTAGAAGGTAAACCGTTTATTTCTAGTGTTCCTGCAGTAATTCCTACAGGTTCTGATAATGTTTCCAATTCTATTCAGTCGGGTTCAATGTATCAAAATTTAATGGTTATGGACCAGTATGGATCTTGTATGTATACAAATCCTCAGCAAGTTTTACCTAAACAGGACACTACAGGATTGTACACTGAATCTGGATCACTAGTGCCTAGCATGCATATGTCAAATACTTCAGTGCCCCCTATTAATGATGCTAAGACTTTGATAATTGAAGTTGGGCCTATGGCTGGTCCGGAACAAGTAGTTTCTTGTAGTGTTCAGGAAGAAAGCAATGTACCTGTTCCAAACTCCAGTGTAAAACCTGATGAATTTGAATCAGATGGCACGAAAATAGAACAAAAATGTGAGACACCTGTTACAACTAAAGGattaaaaattttaagtaatataaaagtaGAAGTTCCAGTACAGcataataagaatataattaatactattATGGACTTAACTGGTTCCAATGAGTCTGATAGTctcaaaaaagaagaaaatctaGAATCACCTGAAAAAATGATGTGTacttttgaagaaaaaaaagaaatccttACTCTTGAAAACATACAACCATCTACttctactaataataatatagtatctGATGCATTTTCTGTAACAAACAGTGCTGTAAATGCTCCATCACAAACTGATTCTACGGTTAAGTCTTTAGATAACAAATTAGATGCAGACTTTAGTGACAGTTGCCCTGTGCCAGACCTCATATGTAATGAAAAGCCGTCAATATCACCATGCAGTGAATTATCAGAGAGTGGAGAAAACTCCACAGACCGCACAACGGTATGTCCAAAAGTAGAGTCAAGTAATAGTCAATTGTGTGAGACTATAGAGACGGTTGAGAAGAAAGTAAAATTGCCCACTAAACCAAATAAGCTAAATTTATTAAGACTGAACAAcatatatgtgaaaaaaaacaaaaaagttttaaaaattaaaaatgcaaagCAGAAGCCTGAAAAAAGTTTGAATAAGATTGAGCTGGAGCCAATACCTTCGTCTTCTACAAAATTACCAGAGAACTTTGCTATAAACAGAGCCCACCAAACAGAAACAGAGACTCAAGAAGAGCATGAATGTTCAATGTTGCATTCAATTTCAGTGGAAGAGATCAAGCAAAGCGATagttatatagtaaattatgaTAAAAGTCATTACCATGCTAGTTCAGAGGGGCAAGCTATGGATATTGAGCCATTACCACAGCCTCAGTCACATACAGATGAGTTTACAACTGACATTGATATGGTGCAAGTAAAAGAAGAGATCAATACCAGTAATGAGAGTGGCATTACTAGTGAAATTACTACTTCTGAACGTATTTTAACCCCATTAGAAACCTTAAGACCGATTAGTGCTGTTTCTTACAACACAGTGCCACCTGGTGAATTCGATGATGAATCTAATCATAGAGAGCTACTAGATCTTGAAGCTGCATCTAAAACCAAACAGTTTGTGAGCATGATGAATGAAAACTATTTCGGAGATAATATATATGCCGACTATTTTACTCCTGATCGCGTAGAAGCATTTGGTAATGATAGAGACACCACAGCACAAAAGGATGGGATGTATGGATTGTGGGGGGAAACATCACAGAAAGAAAATGAATTTATCTTACCTAATTTCATACATGAAAGTTACAAAATTGTGGAGAGTAATGATGCTGCATACCCTGAGGTGGATGAAGAGAGACATGTAGATAGAGATGGTGATGGTTGTGAGAAGGACAGTAAAGCTGAAGTGTTAAGTGAAAGCCGGAGCGAATGTGAGGCACCTTTGAATATTTGTGCCGATGAGCGCATGCCTCCACGGGGTGAGCTAAGTGGACAAGAGAGCAATGGAGATATGGAGTCTTCTTGGAATGGGATTTATCCAGAAGTGACGGCGACTGAGCCTTATGACCTGATGGCGCGCGAGAGTTGGGTCTCTGACGGGTCTGACATGGATGCCACTGAGAAGAGGGAACCtttGGAGGAAGAAATTAATTTTTCCAAAAGCCGCACGCACACGTGCATCCACTGTAGTGTCAAGTTCTCATCTGCGAAGGAACTGCGTTTGCACAAGAACGTTGCGCATGCACCGGCCACCTGCTCCATCACAAAGACTACCTACAGCCGGATGGTGACAGCCAGGGCTATCAAAAAGGAGGAGGAAGTCAAAACTGATGATAACCTTTTGTCATGCAACATGATGGCGATAGACACGAAGGAGTCTATAAGGACAACAATACTCCAAGCCTACGACATGGAAGAGGCGAAAGCGAAGATCGAAGGGCTGATCAAGCAGGAAACGAAGCGGAGACGGAAGGACTTCGTCTGCCCCACGTGCAAGGTGGACCAGATCACTGATGCTGCCTTCCACGCGCATCTCAAGATCCATCCGCTCGAGTGCCTGACGTGCGGGAAGTGCTTCTTCAGACGCTCGAACTTGGCGCTACACATTAAGACGCATTTaggtattaaaaattacaaATGTGAGATATGCGAGAAGCGGTTCCTGACCCGGCAGAAGCTCGCAGACCACCACAACGTGCACACAGGCCGCGCTCCCATCAAGTGTACCCTCTGCGACGACACCTTCCGCAGATACTCTAACATGGTGCAGCACAGGAACCGTCACCACCTGCAGAAGCGCATGAAGGTGCGCGACTACGTGTGCCACTGCGGCGGCGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACCAGGAGACGCACGACGAGAGGCCCAAGTCGTGCCCGTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGGCACATGCGCCGCACGCACAACCAGTACCACCTCGCCGACCGGCTCAAGGGCAAGGTGGACAACGTGCCCTGCCCCATATGCAAACAGGTGTACCTCAGGCCAAACCTACGCACGCACCTGCAGACGCACAGCGGCAAGCGGCCCTACGTGTGTGTCATCTGCAACAAGGGCTTCACCACCAAGTGGAACTTGAAGCTACATCGCTGGACCCACATGAGCAGGTCAGCCAAACCCTTCAAATGCCATCTGTGCAAGGGCGCCTTCATACGGCAGACCGAGTTCATATCCCACATGAACGCTCACAAGTCAGTGAGACCCTACACCTGTAACTACTGCGGCTGCCAGTTCATCAGACGCTACAACTGCCAACGGCATGTGAGGGAACACGAAATGGAAAAGAAGTTTGTGTGCAAAGTGCCCGAGTGCGGCAAGTCGTTCCATAGGAGCTACTACCTTTCGGAACACATGAAAGTGCATAGCGGAGTGAGGCCGTTCGCCTGCAATATCTGTGGTAAAACCTCAAGCAATAAGTCTAatcataataaacatattaaaatacatcaCGCGCGGGAGCCCGTGGCCACCGAAGCGTAA
- Protein Sequence
- MDSLVQCPVCTLYLHNGMTLESHLETHPKDQVIKALCSLASGKGSYASRTSSPIHSERSYRSRSRTPAVEDKWNGSHRSGEHDRYWRRTPSRTPKSTSSTNISRNGTPDMKMDVKMADSISIGSSSSSGQNSLSSYVLKPDKMQPTYQNSPISDFEHVSGFYQDPHDDKEIKFSRSVEYNPMDSGNGVYTYNMPSTGTGLRYPNHNSLLSNIPGKKGFVKFVQKPNNVFIKSDGSAMQYLPGTKPLHLMVPGAQTFVQRNMQNNMIIPAGISQSQMQIDAKSMSPQLAPNQFNQLPAATYTPGLSTVVTQNSQIIYREMLHNVEGKPFISSVPAVIPTGSDNVSNSIQSGSMYQNLMVMDQYGSCMYTNPQQVLPKQDTTGLYTESGSLVPSMHMSNTSVPPINDAKTLIIEVGPMAGPEQVVSCSVQEESNVPVPNSSVKPDEFESDGTKIEQKCETPVTTKGLKILSNIKVEVPVQHNKNIINTIMDLTGSNESDSLKKEENLESPEKMMCTFEEKKEILTLENIQPSTSTNNNIVSDAFSVTNSAVNAPSQTDSTVKSLDNKLDADFSDSCPVPDLICNEKPSISPCSELSESGENSTDRTTVCPKVESSNSQLCETIETVEKKVKLPTKPNKLNLLRLNNIYVKKNKKVLKIKNAKQKPEKSLNKIELEPIPSSSTKLPENFAINRAHQTETETQEEHECSMLHSISVEEIKQSDSYIVNYDKSHYHASSEGQAMDIEPLPQPQSHTDEFTTDIDMVQVKEEINTSNESGITSEITTSERILTPLETLRPISAVSYNTVPPGEFDDESNHRELLDLEAASKTKQFVSMMNENYFGDNIYADYFTPDRVEAFGNDRDTTAQKDGMYGLWGETSQKENEFILPNFIHESYKIVESNDAAYPEVDEERHVDRDGDGCEKDSKAEVLSESRSECEAPLNICADERMPPRGELSGQESNGDMESSWNGIYPEVTATEPYDLMARESWVSDGSDMDATEKREPLEEEINFSKSRTHTCIHCSVKFSSAKELRLHKNVAHAPATCSITKTTYSRMVTARAIKKEEEVKTDDNLLSCNMMAIDTKESIRTTILQAYDMEEAKAKIEGLIKQETKRRRKDFVCPTCKVDQITDAAFHAHLKIHPLECLTCGKCFFRRSNLALHIKTHLGIKNYKCEICEKRFLTRQKLADHHNVHTGRAPIKCTLCDDTFRRYSNMVQHRNRHHLQKRMKVRDYVCHCGGVFHSRAKLRWHQETHDERPKSCPYCSDKFVHAASLTRHMRRTHNQYHLADRLKGKVDNVPCPICKQVYLRPNLRTHLQTHSGKRPYVCVICNKGFTTKWNLKLHRWTHMSRSAKPFKCHLCKGAFIRQTEFISHMNAHKSVRPYTCNYCGCQFIRRYNCQRHVREHEMEKKFVCKVPECGKSFHRSYYLSEHMKVHSGVRPFACNICGKTSSNKSNHNKHIKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -