Aio020504.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000022.1:10512633-10517851[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 0.22 12.7 1.4 2 23 200 222 199 222 0.97 2 13 0.29 22 6.4 1.8 1 23 228 250 228 250 0.97 3 13 0.046 3.5 8.9 3.0 2 23 257 278 257 278 0.93 4 13 0.043 3.3 9.0 0.1 3 19 285 301 284 303 0.96 5 13 0.12 9.1 7.6 1.7 2 23 368 389 367 389 0.97 6 13 1.3 1e+02 4.3 1.0 3 23 397 416 396 416 0.93 7 13 4.8e-07 3.6e-05 24.6 0.1 2 23 423 444 423 444 0.97 8 13 0.00045 0.034 15.3 2.4 1 23 458 480 458 480 0.97 9 13 0.00048 0.036 15.2 0.3 1 23 487 509 487 509 0.97 10 13 0.0059 0.45 11.8 1.6 2 23 515 536 514 536 0.95 11 13 6.2e-07 4.7e-05 24.3 1.5 1 23 542 564 542 564 0.98 12 13 2.1e-05 0.0016 19.5 3.7 1 23 570 592 570 592 0.98 13 13 0.0036 0.28 12.4 1.7 1 23 598 621 598 621 0.94
Sequence Information
- Coding Sequence
- atgaaaaaaaaattgtgcgtTGAGCAAACGAAAGTGCATTATTGTAGATTCTGTGCggagaaaaaacaaaataatgaacttttaattaattttaaattagacgACGACATCATCAAAGAAATAATTGATTTCACGAAAAACGTACAAATAGATTATTTGGACATATCGAATGAAAATAGCTTGCCAAAAACACTTTGCAATGGCTGTCTCAACAATATTAAAGCATTTAACAATTTTCTTTCTAAAGTCAAACAGTCAcaaattttactaaataatatttacaatattactaaAGAGGAAATAAACTTAGGACTCGAAAACAAAGATGAAGATGAGACTGAATCTAACAGTACATATGGACTGGAATATTTTGATGATACAAGTAACTACAGTGATGAAGTAGCTTCAACCAAATCACATTCAAAAACCTTTAGTAAGATACAAATACAAGAAACAATAGTTCCCTCAAAACGTATATTGCGCAGTCACAAAGTAACCGAGGATGATATTTCATCACAACCAACTGTAAAAAGAGTTAGAAAAGCTCAGATAATTCATGAAAAGGATGTTGATAATTCTTGGACAAACTACAATTGGCGCTGTAGGGACTGTGCTATTTCATTTGAGACAATGCATGCTCTTCGGACCCACAAAAGGACAGAACATAATTTATGTTTCAGGTTTCAATGCAAGGACTGTTCCTATAAAGTGCCACTATTTAATGATTTCATTGAACATGTGAGACATCACAGGCCAATACTAAGGAACTACTGCGAGTATTGTAATAAGAAGTTCACCACGACAGCCCAGTGCTTAGAACATACTGCTACGCACCTTGCAGGACGAGAAGCTTGCAAAGTGTGTGGAAAAATAATGAAAGACTCCAAAACACTGGAGAAgcataatgaatacaaaaagaGTAAATTTGCACGATATCCAGAAAAGGTAGAAGTTAAGCACACAACATTAGTTTTGGAAAATGGAATTGATGCCTCATGGGTGGACTATGACTGGTCTTGCAGAGTGTGTTGCCAGAGATTGCCAGATGTTGATGCATTGAGGAAACATTGCCAGGAAGTGCATAAGAAGTGCTTTGCAATGAAATGCATGGATTGCTCTATGCATATAAGGAATTATGAATCATTTGTGAAGCATGTTCGTATACATCGACCGTATTTAAAaaaattcTGCGAATActgtaataaaaacttaaaaggaatttatttaacTCAGCATGTAAAAACACATAAAAGTAAATCAAATAATAGATGCCCCGGCTGCGGACAGACGTTTAAAACTGCTGATAATTTAGAAGAACACATGATACAACACGCAACACCGACAGTAGCAGAGTCTCTGGTGGAAGGAGACTTCAATTGTAACGTGTGCAGGAAGTCTTTTCGATCACTGATAAGCTTCAGGGAGCATAAGAAAATCCATAACACACGAACGCGGGACTACACGTGTGATACTTGTGGAGCTACATATATGACTCTTAATACTTTGCGTGCTCACATAACGAACCACAAAAATAAACTTCTTGTCTGCAAAGTGTGCAAAAAAACCTTTTCCTGCAGAGCTCTACTCAGGATACATGTCACTATCCATTTAAGCAAAAAACGCTTTAAGTGCAACGACTGTGGCGCAGAATTTAATAGAAAAGACTGTTTAACACGCCACATGGCTGTTCACAGCGATGTCAGGCCCTTCAAATGTAAGGAGTGCGAAAAAACGTTCAGGTTCCAAAAAAATTTGTCAGTGCACTCTCGTCAACATACAGGCTTGAGACCGTATTCCTGTGAGTTCTGTGACAAGACTTTTATCGATGGTGGCAATTGCAACAAACATATGTTGGGGAAACACGGCGTTTCTCGGtcgaagaaaataaaaaaacagattcCAGTTGACGACGCTACTAACAAATGGGTCAATAAGTTGGTTTTTGGTGCATCAAAATGCATTTAG
- Protein Sequence
- MKKKLCVEQTKVHYCRFCAEKKQNNELLINFKLDDDIIKEIIDFTKNVQIDYLDISNENSLPKTLCNGCLNNIKAFNNFLSKVKQSQILLNNIYNITKEEINLGLENKDEDETESNSTYGLEYFDDTSNYSDEVASTKSHSKTFSKIQIQETIVPSKRILRSHKVTEDDISSQPTVKRVRKAQIIHEKDVDNSWTNYNWRCRDCAISFETMHALRTHKRTEHNLCFRFQCKDCSYKVPLFNDFIEHVRHHRPILRNYCEYCNKKFTTTAQCLEHTATHLAGREACKVCGKIMKDSKTLEKHNEYKKSKFARYPEKVEVKHTTLVLENGIDASWVDYDWSCRVCCQRLPDVDALRKHCQEVHKKCFAMKCMDCSMHIRNYESFVKHVRIHRPYLKKFCEYCNKNLKGIYLTQHVKTHKSKSNNRCPGCGQTFKTADNLEEHMIQHATPTVAESLVEGDFNCNVCRKSFRSLISFREHKKIHNTRTRDYTCDTCGATYMTLNTLRAHITNHKNKLLVCKVCKKTFSCRALLRIHVTIHLSKKRFKCNDCGAEFNRKDCLTRHMAVHSDVRPFKCKECEKTFRFQKNLSVHSRQHTGLRPYSCEFCDKTFIDGGNCNKHMLGKHGVSRSKKIKKQIPVDDATNKWVNKLVFGASKCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -