Basic Information

Insect: Automeris io
Gene Symbol: -
Assembly: GCA_036320925.1
Location: JAUDJH010000024.1:8412824-8424016[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0051 0.39 12.0 1.2 1 23 320 342 320 342 0.98

2 12 8.6e-05 0.0066 17.5 1.4 2 23 350 371 349 371 0.95

3 12 0.14 11 7.4 2.1 1 23 375 397 375 397 0.97

4 12 0.00046 0.035 15.2 0.9 1 23 402 425 402 425 0.98

5 12 0.0011 0.083 14.1 0.2 1 23 429 452 429 452 0.94

6 12 0.012 0.91 10.8 0.4 2 21 470 489 470 499 0.93

7 12 3.4e-05 0.0026 18.8 1.8 3 23 504 525 504 525 0.98

8 12 0.24 19 6.7 0.7 2 23 545 567 545 567 0.97

9 12 2.5e-05 0.0019 19.2 1.1 1 23 578 600 578 600 0.97

10 12 0.00022 0.017 16.2 5.2 1 23 606 628 606 628 0.99

11 12 1.9 1.4e+02 3.9 5.5 1 21 634 654 634 656 0.93

12 12 5.5e-05 0.0042 18.1 0.2 1 23 662 685 662 685 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0051	0.39	12.0	1.2	1	23	320	342	320	342	0.98
2	12	8.6e-05	0.0066	17.5	1.4	2	23	350	371	349	371	0.95
3	12	0.14	11	7.4	2.1	1	23	375	397	375	397	0.97
4	12	0.00046	0.035	15.2	0.9	1	23	402	425	402	425	0.98
5	12	0.0011	0.083	14.1	0.2	1	23	429	452	429	452	0.94
6	12	0.012	0.91	10.8	0.4	2	21	470	489	470	499	0.93
7	12	3.4e-05	0.0026	18.8	1.8	3	23	504	525	504	525	0.98
8	12	0.24	19	6.7	0.7	2	23	545	567	545	567	0.97
9	12	2.5e-05	0.0019	19.2	1.1	1	23	578	600	578	600	0.97
10	12	0.00022	0.017	16.2	5.2	1	23	606	628	606	628	0.99
11	12	1.9	1.4e+02	3.9	5.5	1	21	634	654	634	656	0.93
12	12	5.5e-05	0.0042	18.1	0.2	1	23	662	685	662	685	0.98

Sequence Information

Coding Sequence: atGGGGGATTTAAAAGTGTGCAGAATATGTCTcaatatgaatattaaaatgtataacttGCAGAAAGATCCTTTAGGAAATTATTATGAAGCGATAATTGGAATAAACACTTTAAGCACTATGGAGTTACCACCGTTTGCTTGTTATGAATGTGCTGCATTGCTGAAAAAGTATTACTACTTCAGAGATAGATGTCTACGAGGGCAGGCAATTTTATATGGAATTCTACACATGAATGGAACGataacagagcaagaaatacAGCAAATAAACAGAGCTAGTTTACAAGTGACCTCCAACTACATTATTACTGAAGTCACAAAAGAGAATGTATTTTACCATAACTATGAAGATGAcaatactactactactactactattccactatactatactaataatattgaaGTAAAGATGGAACCCATTTTAGAGATGGACAATAACAAGATAAACATAGAATATAGTGATAAACAGGatgacaaaaacaaattaaacatagAAGTAAATGTTAAAGAAGAGGATTattttgatgctctttcagtgCTTCATTCCACAGATGATGATGAACCATTGTCGTTGCACAAAAGCAATAAagctaaaaaaactaaaaagaaGGATAAGAAGAAAGGGAGAAGAGAAAAGAGAATAAAATCAGATGACAAATCTAATGCAACAgaattatttaagaatattgATCAAACAACAGATGACACGTCTATACTTTCTGATGACTTGTTAGAAATGGTTCACGTGAAACGAAAACGAGGTAGACCTAGTAAGTCAGAACGCCTGCAGACTACCACAGTACAGAAACCAAGACGGACAACAAATACTGGTGGAGTTACGGTCGATGAAATAGACCTCGAAGACTATGTAGAGGTTGTGAAATTATCGCTGGAAGAGCAAATGGAGGAGATAAACAAGAGGAAACAGTCATCAAACTATTTGAACGCGCAGTTCCAATGCAATCTCTGTTACAAAGGTTTCATTGATACACGCGCTTGGCAGCACCACGTCGCCAAACATGACCCGAGCGCTGGGGATATAGAATGTCCGATTTGTAAGTTTCGCTTCAAAACCAAACGGACGCTGCAGAAGCACGCCTCCAACCACGAGATGAAATACGCATGTAAATCATGTTCATATGTCTCGAAAACCGCGACTCAAGCCAAACAGCATCACAGATGGCATAAAGGCGTTACGTATAAATGTCAATATTGCGATGAAGTTTCGACTAAATGGACCTCCTATCTCAGCCACGTGCGTATTAAACACCCGTCAGAATTTATTTGCGGTGTCTGTGGATACTCGTTTGTTAGCAAACTTGGTCTCACCATGCACAAAACTATGATGCACAAAGATGTGACTGATAAAATTGAAACAGATGACGGCAACGAAACTGGTCCATACTGTGAAGAATGTGATGTTAAATTTATATCGGTGGAGGCGTATAAAAGGCACATGGTCACATCTGTAAAGCATACCCAGACGACCCACTTtaaTAATGGGTGTCGTGTATGCGGTGAATCGTTCAAAAATTCGGAAGACTTGAGAATCCATCATCGCAAAGAGCACGCGAGGAAACGTCCCAAGAATTACGGCAGGAAACCCAATAATATGACCTGGCCAGCTAAATGTGAACATtgttCCGAAGAAATCCCGAATGCCCGCGAATACTGGACTCACTTTCGACGGGTGCACCCGGATAAAAATTATCCCATTCAGAAGGATCACATTTGTGACATTTGCGGCAAAAGTTTCAGGGGCAACGCTTTCCTCGTGTACCACACACGGACGCATTTCGAAGAGAAGGCCTTCAAGTGTTCGACTTGCGGGAAAGCCTTCCACAACAGGATCAATCTACACATGCACGAGAAGACCCACTCAGACGTGCGCCCTTACCCCTGCACCGTGTGCTTCAAAGCTTTCAAATGCAAGGGCGCTCTCGATCGGCATTTCCGTTGTCACACGGGTGTGAAGCCGTACGAATGCGAGGTGTGCGGCAAAGCGTTCGGGCAGTCGAACAGCCGCAAGCTCCACGTGAGGACGGTGCACCTGAAGCAACCGGCTCCGTACGTCAGCCGGTCCAGGCAGCAAAAGAAAAACAACACCCAGCTACAGAAAGAGTTCACACAAACCTACATCTACAACTAA
Protein Sequence: MGDLKVCRICLNMNIKMYNLQKDPLGNYYEAIIGINTLSTMELPPFACYECAALLKKYYYFRDRCLRGQAILYGILHMNGTITEQEIQQINRASLQVTSNYIITEVTKENVFYHNYEDDNTTTTTTIPLYYTNNIEVKMEPILEMDNNKINIEYSDKQDDKNKLNIEVNVKEEDYFDALSVLHSTDDDEPLSLHKSNKAKKTKKKDKKKGRREKRIKSDDKSNATELFKNIDQTTDDTSILSDDLLEMVHVKRKRGRPSKSERLQTTTVQKPRRTTNTGGVTVDEIDLEDYVEVVKLSLEEQMEEINKRKQSSNYLNAQFQCNLCYKGFIDTRAWQHHVAKHDPSAGDIECPICKFRFKTKRTLQKHASNHEMKYACKSCSYVSKTATQAKQHHRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLTMHKTMMHKDVTDKIETDDGNETGPYCEECDVKFISVEAYKRHMVTSVKHTQTTHFNNGCRVCGESFKNSEDLRIHHRKEHARKRPKNYGRKPNNMTWPAKCEHCSEEIPNAREYWTHFRRVHPDKNYPIQKDHICDICGKSFRGNAFLVYHTRTHFEEKAFKCSTCGKAFHNRINLHMHEKTHSDVRPYPCTVCFKAFKCKGALDRHFRCHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRSRQQKKNNTQLQKEFTQTYIYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -