Aio016278.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- ZFX
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000017.1:386116-402718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0094 0.72 11.1 0.9 1 23 277 300 277 300 0.92 2 13 0.0075 0.57 11.4 3.5 1 23 306 329 306 329 0.97 3 13 0.012 0.88 10.8 4.1 1 23 423 447 423 447 0.84 4 13 0.0022 0.17 13.1 0.1 3 23 511 532 510 532 0.92 5 13 0.0023 0.17 13.1 3.9 1 23 571 593 571 593 0.98 6 13 0.99 76 4.8 0.2 1 23 600 622 600 622 0.93 7 13 0.6 45 5.4 0.3 1 23 626 648 626 648 0.93 8 13 0.0085 0.65 11.3 0.6 1 23 653 676 653 676 0.97 9 13 0.00015 0.011 16.8 0.2 1 23 680 703 680 703 0.97 10 13 0.00076 0.058 14.6 1.8 3 23 746 766 745 766 0.98 11 13 1e-07 7.7e-06 26.8 0.4 1 23 772 794 772 794 0.99 12 13 9.9e-06 0.00076 20.5 0.6 1 23 800 822 800 822 0.98 13 13 2e-06 0.00015 22.7 2.0 1 23 828 851 828 851 0.97
Sequence Information
- Coding Sequence
- ATGTGGTCCGAGACAGAAAATGTAGACCTTACATGTCAAGGCGACGTAAAAAGCGAGTTAATGTCGTGCCGGGGTTGTCTCGGAGCGGGGCGTTTGTACAACGTGCATCAGTACGGGCTAGCGGAGCCTTACAGACAACTTGTTGGCGTTGAGATAAGAGAGAAGAGTGGCTTGCCACAGCACCTGTGCCACATGTGCAAGGCCCTTGTGATCAAGTGGACAGTGTTCCGGGAAAGGTGTCGACGCTCAGAGATGTTACTGCAGAGCCTCGCTGTCGTCAATCCTGTGATATTGACTGAGGACATCTCAAGCATAGACAGATATGCCCAAAAACTAGTTCCCAGTTACACACAAACAGAACCATACATAACCGATTCAAGAGAGATAGAAGACATTATAGAATATAAAGTAGAGATGAATGTAGATGAAAATAGTGATACAGGTTTTAATTATGAGAATGATCCAAACCTTGATGTTAATGAAGACCGGAAAGTGGATATATGTTTGTTAAATACAGCCACTGATTCAGCCAATAAAGAGAACAAACAGGAGACTGAAATGAGAGTGGGTGAGAAGCGAAAAAGAGTTAAAAACGAATATGTAATAGTTAAAAAAGAGAAGTTTATAGAAATTGAATTGGATATGGAAGAAAATGAAACTGTTGAGAGGAAGAAGCGGAAAGTAAATGATTATGTTCTACTCTCAGATCCAGAGGTTAGAGAGAAGTTTTCGCAGAAGTATAATGTGGATGTAATGATGCTGAGTAAAGAGGATGAGAAGAATGATATGGTGGCACGGCAGAACAGTCCAAAGTATCTCAGAGCTTCTTATAAATGTGAACAATGTTTTAAAGGTTTCCTTCAAGAAGacactttaaaaaaacatataggaGAGAAACATGACCCAAGTATGGAGCATGTTTGCGAATTCTGCCGGTTTAGATTCAGGAAGAGTGAGAACTTAGCGGGTCACTACCGGCGCCAACATAAATATAAGTACATCTGTAGGATCTGTAGCAATGTCACCAGATTACGtgTAATCGCTGTTTCACATTACAAAAGGCATTTTAAGACGCCACGAACAAAGACCCAATCTAAAGTACGCTCTCGAACTAAAGTACGCACTAAAACCAAGAAACGCCCCGAGACCAAGAAACGGTCTGAAACCAAGAAACTGAGTAAAACCAAGATACGACCTCAAACAATGATAAAGGCTCAAACCAAAGAACGGACTGAAACGGACAAAAAAACGTCGCGTGTTCACAAGTACGAGTGCAAGTATTGCGGAAAAACTTTCCAGACCAAGGGCTGGACGTACCGCAAGCACCTCCGCGTTAACCACAGCGCCGAGATGCCCTGGTGCCGGATCTGCGGGGAAGCCTTCGAATGCATCATAACCCATATGAAGAGACGACACAGTCAGGCGCTGAACCCGGCCCCGGAGCTGCAGTGCGCGCCGTGCGGGCTGCAGTTCCTGAGCGCGGCGGCGCGGCGCGACCACGCGCGGGCGCCGTGCGCGGGCCTGCCGGCCTGCCTGCACTGCGGCCGCCCCTTCGACTCCGAGGCGCAGCTGCGCGAACACGTGCTCGCCCTGCACAAGATACAACTGCCCTGCGTCAAGGATGACATAGAGGTGGTGGTGATGTCCAGAGAGCAGCAGATAGAGGACATGCAGGCGAGGAAGTCCTCCTCCAACTATCTGAACGGCGTGTTTAAATGCGACAAGTGCTACAAAGGTTTCCAACGTGAAGTCACGTTTAAGAATCACATGTTCAGGCACGACCCGGAGAGCGGTGCCTTTGAATGCGATATATGTCTCACAAGATGGGTAGACTTGAGGACGCTTCGCGATCACAAGCAAGtgcacaataaaaaatacttatgtaAATTGTGCAATAATGTGTCTAGAAACCAGTATCAAGCTAAGGAGCACGCCCTCTGGCACAAAGGTTACATGTACATCTGCAACATGTGTGGAGCCTCGTTTCAGAAGACCACCAGCTATCTAGGCCACCTGAGGATGCGACATCCTTCTAAACACAGCTGTGAGCTCTGTGGAGAGTCCTTCGTTGGAGAGGCCGGCTTAAATATTCATATGAAGAAGACGCATCGTTATGATCAGTACGACAAATCGTACGTGGAGGGCGAGCTGAAAGCGCTTCACGAGCAGAGCCTGCCGGACCCGGACCGCGTGCTCAAGCCGACCAAGTACAAACAGAAGAAGGTCATAGCGATCTGTGACATATGCGGCTGCAAGCGGAGCTCGAAGAACACGTTGATAAACCACATGCGCATCCACACGGGAGAGAAGCCCTTCCAGTGCCCGGAGTGTCCCAAGAAGTTCAGCGTCCCGCACGGCCTCGAGATCCACATGCGCACGCACACGGGCGAGCGGCCATACAAGTGCCCCGTGTGCCCCAAGGCCTTCAAGCAGCACACGGCGGTCCTGCGGCATCAGCTGGTGCACACGGGGGCGAAGCCCCACCAGTGCCCGCAATGCGGCAAGTCGTTCACTCAGTCCTATTCGGTGAAGATGCACGTAAAGACTGTACACGAGGGGATGCCGCAGCCCTACAGGCGCCCGCGCACGCAGGGCCGCAAGGGACGGAGGCCTGAGGACCAGTAG
- Protein Sequence
- MWSETENVDLTCQGDVKSELMSCRGCLGAGRLYNVHQYGLAEPYRQLVGVEIREKSGLPQHLCHMCKALVIKWTVFRERCRRSEMLLQSLAVVNPVILTEDISSIDRYAQKLVPSYTQTEPYITDSREIEDIIEYKVEMNVDENSDTGFNYENDPNLDVNEDRKVDICLLNTATDSANKENKQETEMRVGEKRKRVKNEYVIVKKEKFIEIELDMEENETVERKKRKVNDYVLLSDPEVREKFSQKYNVDVMMLSKEDEKNDMVARQNSPKYLRASYKCEQCFKGFLQEDTLKKHIGEKHDPSMEHVCEFCRFRFRKSENLAGHYRRQHKYKYICRICSNVTRLRVIAVSHYKRHFKTPRTKTQSKVRSRTKVRTKTKKRPETKKRSETKKLSKTKIRPQTMIKAQTKERTETDKKTSRVHKYECKYCGKTFQTKGWTYRKHLRVNHSAEMPWCRICGEAFECIITHMKRRHSQALNPAPELQCAPCGLQFLSAAARRDHARAPCAGLPACLHCGRPFDSEAQLREHVLALHKIQLPCVKDDIEVVVMSREQQIEDMQARKSSSNYLNGVFKCDKCYKGFQREVTFKNHMFRHDPESGAFECDICLTRWVDLRTLRDHKQVHNKKYLCKLCNNVSRNQYQAKEHALWHKGYMYICNMCGASFQKTTSYLGHLRMRHPSKHSCELCGESFVGEAGLNIHMKKTHRYDQYDKSYVEGELKALHEQSLPDPDRVLKPTKYKQKKVIAICDICGCKRSSKNTLINHMRIHTGEKPFQCPECPKKFSVPHGLEIHMRTHTGERPYKCPVCPKAFKQHTAVLRHQLVHTGAKPHQCPQCGKSFTQSYSVKMHVKTVHEGMPQPYRRPRTQGRKGRRPEDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -