Aio005331.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000005.1:5139677-5145371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.013 0.96 10.7 1.0 1 21 69 89 69 90 0.95 2 20 0.017 1.3 10.3 0.5 2 23 161 182 160 182 0.97 3 20 0.0069 0.53 11.5 0.1 1 23 186 208 186 208 0.95 4 20 0.004 0.31 12.3 0.1 1 23 213 236 213 236 0.90 5 20 0.024 1.8 9.8 0.5 1 23 242 265 242 265 0.96 6 20 0.00035 0.026 15.6 1.0 1 23 272 295 272 295 0.96 7 20 1.6 1.2e+02 4.1 0.7 1 23 380 403 380 403 0.88 8 20 0.54 41 5.6 0.3 2 23 430 451 429 451 0.95 9 20 0.23 17 6.8 1.9 1 23 473 495 473 495 0.98 10 20 2.1e-05 0.0016 19.5 0.9 1 23 499 521 499 521 0.98 11 20 0.034 2.6 9.4 0.0 1 23 526 549 526 549 0.96 12 20 0.15 11 7.4 0.4 1 20 555 574 555 578 0.81 13 20 0.0039 0.29 12.3 0.5 3 23 587 608 585 608 0.96 14 20 0.55 42 5.5 0.7 1 23 668 690 668 690 0.94 15 20 0.0071 0.54 11.5 0.1 2 23 716 738 715 738 0.94 16 20 0.06 4.6 8.6 0.6 1 23 760 782 760 782 0.98 17 20 0.0035 0.27 12.5 3.2 1 23 786 808 786 808 0.97 18 20 0.02 1.5 10.1 0.2 1 23 813 836 813 836 0.90 19 20 0.03 2.3 9.6 2.5 1 23 842 865 842 865 0.95 20 20 0.025 1.9 9.8 0.5 1 23 871 894 871 894 0.96
Sequence Information
- Coding Sequence
- ATGATAGGAGACAGGagagGAAAACGTGGTTATACTGCAAAAGAAATTgagataaaaaatgaaaataatgacAATGAACCGATAAAAGCTGTAAGTAAATACAAAAGAAGCGCTCGAGCCGAAGCAAGGATAGTCACGAAACGAAATGCGACAGCAATCTTAGAATGCTGGACACTGTGTCCGTTCAGGTGGAAAAAGAACAGATTCAAGTGCGCGTACTGTGAGGAGAACTTTACAGAATGTGAAACGTTGAGGGAACACGTGAAATTGTGTTCGACACGACACGCGGTTACAGATATTTATAGCAAATTTAAAGAGATGCCGTTGATAAACGTGGATTTAGTGGGAACGGTGTGTGTTTTATGTTCAGTTCCTTTAATAGACATTAAGCACATGCGAGATCACGTGACGCAGCATGGTTTTGCCTTTGACGTCAACCATCCAGACGGTGTCCTGCCTTTCTCGCTCGATAAAGACTGGAAATGCGTTATATGCAGTCAAAATTTCAACAACTTTCTCAAACTCTACGAACACATGAACGTCCATTATCAGCATTATATCTGTGCCACTTGCGGGAAGGGATATATGACTGCGGCTCGTTTAAGGAAGCACTCGGAGGTCCATATAAGCGGGTCGTTCCCATGCAATGATTGCGGGAGGGTTTTTACTATGAGAGCTGCCAGAGACTCTCACAAAGCCACAGCTCACGCTAAAGGTCCTAGATACGAGTGTCCACGCTGCGATATGAGATTCGATGGTTATTACGACAGAATGACCCATTTAAAGAACGCCCATAGACAAAGCGAAGTATTCTATAGATGTTCCCATTGCGATTTGTCATTTAAAACGAGCGGGAAGCGAGCAGCTCACGTTCGCGCCGTCCATTTTCCACCGCAATACGAATTCAGCTGCATGTATTgtTCCGCCAATGAGGCGGAGTTGCTTCTAGGCGCGATTAGGCGTGGTAGAAAATTAAAGGAGATAGTTTCAGAACGTCAAATGCGCAGACGCAGGCGGGCGAACAACGAATTGCCCGAAGAATCTGAAAAACGTATTGCGAACACAATGATGCGACGGAATGCCATGACTATTCTAGAATGTTCCTCAGCGTGGGCATTCAGATGGTTTCAAGGCGCTTTCTACTGCTCGTACTGTGGAATGAAACACGTGGATGTCCGGCCTCTTCGCGATCATGTCATTACTAATCATTTGAACCAAACTCCAACAAAGAAAATCTTTGCCAAACTGAAAGAAAACAATATGGTTAAAGTAGATATAACGATACTTAATTGTAGGATTTGTAACGCCAGTATAAACGGACTTGTACATTTGAAGGATCATTTAGCAAGTCACGGAAAGAAATTACACTCAGATTACAGCGATGGAGTCCTTCCTTTCAAACTTGAAAATGAAGGCTTCTATTGTCAAGTTTGTTATACCCACTTCATCAGTTTCGGTAGGATAAATGAACATATGAACATACATTATCAGAACTATATTTGCGATACATGCGGCAAAGCCTTCGTATCAAAGTCGCGTTTTAGGACGCACGTCCAGAGCCATGAGAAGGGAAGATTCCCTTGCAGCGTCTGCGGTTACGTGTTAGAGACTAGAGCGGCAAGGATGTTGCATATAATGCGTGTCCACAGAAAAGGCATAAGATACTCGTGTCCAAGATGTCCTGAAGTCTTCAACTCGTATCACGTGAGGGTGAAGCATCTGGTTGATGTCCACGGGCAGCGGAAGGTGGAATATGGGTGCGACGTTTGTGGAAAATTTTTTGAGACGAGTTCAAAGCGCGCCGGCCATTACAGGATGACTCATATGGCACCGGATAAATCCTTAGAATGTTCGCAATggaACAGCGACGAAGAAAAAGGAAATACTGCAGTTAAAATTGTATGGAAACGTAGGACATTATACATCGTCGAAGAAAAAGCTAATGCCGCTATGATAATAAACTATTCGAATGCTGTAGTATTCCGATATCAAAGGGGAAAGTTTATGTGTGGATATTGCCCCCAGATGTGTGCCAGCGTGAACGAAGTCCGCTCCCACTCCTCTTCCCACAAAAACAAAATGGAGGTCTTTGAGAACCCCGAAGTTCGAAACACGTTCCCCTTACGGGTTGACGTGACAAACCTATCATGCACAATCTGTGACGAGTCAGTCGAAAATATTGACACTTTAAAGTCCCATTTGAAGGATGCGCACTCGGTGAAAGTTAATCCGAAATTCACAGACGGGGTGATTCCGTTTATTCTAACCGATAAAGAGTACCGGTGCGTCCATTGCGCGAAGATTTACGAGGGCGTTATGAGTCTGTTTGTTCATATGAATCAGCATTACCAGAGCTACGTGTGCCATGCTTGTGGGAAGGGGTTTGCGGCTAAACATAAATTACGATCGCACAAGATGTACCACGAGACTGGCCGCTTCCCATGCTCGAAATGCGACCTCGTGTTCCCAAATCGCCCAGAGAGGCATCGGCATGTAGCCGCGGTACACGCTCGTAAAGAGAAATACCGCTGTCCTATCTGCGATACTTATTTCGATTCGTACCATTCGCGACTGCAGCATTTATATAAAGTGCACGGACAAAAAAGGCAATACAAATGCAGTATGTGCCCTGCAGTCTTCATATCGGCAACGATGAGACATTCTCATACGAACGTGGTGCATTTGAAGAAGAACAAGCATTAg
- Protein Sequence
- MIGDRRGKRGYTAKEIEIKNENNDNEPIKAVSKYKRSARAEARIVTKRNATAILECWTLCPFRWKKNRFKCAYCEENFTECETLREHVKLCSTRHAVTDIYSKFKEMPLINVDLVGTVCVLCSVPLIDIKHMRDHVTQHGFAFDVNHPDGVLPFSLDKDWKCVICSQNFNNFLKLYEHMNVHYQHYICATCGKGYMTAARLRKHSEVHISGSFPCNDCGRVFTMRAARDSHKATAHAKGPRYECPRCDMRFDGYYDRMTHLKNAHRQSEVFYRCSHCDLSFKTSGKRAAHVRAVHFPPQYEFSCMYCSANEAELLLGAIRRGRKLKEIVSERQMRRRRRANNELPEESEKRIANTMMRRNAMTILECSSAWAFRWFQGAFYCSYCGMKHVDVRPLRDHVITNHLNQTPTKKIFAKLKENNMVKVDITILNCRICNASINGLVHLKDHLASHGKKLHSDYSDGVLPFKLENEGFYCQVCYTHFISFGRINEHMNIHYQNYICDTCGKAFVSKSRFRTHVQSHEKGRFPCSVCGYVLETRAARMLHIMRVHRKGIRYSCPRCPEVFNSYHVRVKHLVDVHGQRKVEYGCDVCGKFFETSSKRAGHYRMTHMAPDKSLECSQWNSDEEKGNTAVKIVWKRRTLYIVEEKANAAMIINYSNAVVFRYQRGKFMCGYCPQMCASVNEVRSHSSSHKNKMEVFENPEVRNTFPLRVDVTNLSCTICDESVENIDTLKSHLKDAHSVKVNPKFTDGVIPFILTDKEYRCVHCAKIYEGVMSLFVHMNQHYQSYVCHACGKGFAAKHKLRSHKMYHETGRFPCSKCDLVFPNRPERHRHVAAVHARKEKYRCPICDTYFDSYHSRLQHLYKVHGQKRQYKCSMCPAVFISATMRHSHTNVVHLKKNKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -