Aio005386.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000005.1:5450635-5452416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0064 0.49 11.6 1.8 1 23 30 52 30 52 0.95 2 15 0.019 1.4 10.2 1.0 2 23 123 145 122 145 0.95 3 15 0.00032 0.024 15.7 4.9 1 23 150 173 150 173 0.95 4 15 0.00034 0.026 15.6 3.6 1 23 177 200 177 200 0.97 5 15 0.033 2.5 9.4 2.2 2 23 203 225 202 225 0.96 6 15 2.3 1.8e+02 3.6 0.5 2 19 231 248 231 250 0.94 7 15 0.02 1.5 10.1 4.3 1 23 301 324 301 324 0.96 8 15 0.47 36 5.8 0.2 2 23 353 375 352 375 0.94 9 15 3.9e-05 0.003 18.6 0.5 1 23 397 420 397 420 0.96 10 15 1.4e-06 0.0001 23.2 0.3 1 23 425 448 425 448 0.93 11 15 0.00016 0.012 16.7 1.0 5 23 457 476 451 476 0.86 12 15 0.013 0.98 10.7 2.1 2 23 482 504 481 504 0.95 13 15 0.00025 0.019 16.1 1.3 1 23 508 531 508 531 0.97 14 15 0.0053 0.41 11.9 0.2 2 23 538 559 537 559 0.96 15 15 0.0061 0.46 11.7 2.4 1 23 565 587 565 587 0.97
Sequence Information
- Coding Sequence
- ATGAACAGTGCTAATTACCACAGGAGGAAGAATCTCCAGATTCTGTTCAACAATACCACGTTGATACCGTTTAAATGGCGTATGAAATATTTGTGCTTTTACTGCGGTCGCCACTTAGCAGACTATAGTGACCTAAAAGGACATACTAAAAACCATGGTGACTGTTCTGACAGTGATCGGGCCATTAAGTTAGTCAAAGCTCCAGACAGTGAAGTCAAAATAGACGTTTCTGAAATATCTTGCGAAATATGTATGGAGTTGTTTGACAGTTTCGATGACATTGTATCTCATTTGATAGGAAAACACAATTTACCCTATAATAGAAATGTTGACCTTATGATTACAACGTATCGATTGTCTGATCTCAAATGTTTATCGTGCGAACGCGGCTTTAGATTCTTTCGGCAACTTGTCTCTCATATGAACAATGATCATCCGAATAGTTGTTTTCTGTGTCATGAATGTAATCAAACGTTTAACAAGAAGCGAGATCTCGATCACCATATTAGAGTATATCACAAGAAAGAATACTCCTGTCAGAAATGTTTTCAAAATTTTGTATCAAACTCCGAACTACAGCATCATCGTAAAAATGCGCACGTGTCGACATGTAACTTATGCTTCAAAACATTCTCTTCCGAGAATCGTAGATTGGATCACATGAAACGTGACCATGACACCGAAGGTGCCAAATGCGGTTTTTGCCATaaaatcatgactacagagcaaagTTTTTTGAGACATGCCGCTCAATGTACAGTCAGAGAAAATAAAAGTGGAGAGACTATAGTAGTAGAAGATGATGGTAAAAGGAGTCGACCTGTTAAAGAAATCAGAAATGATATCGCTTGCGTGCTCAACAAGTCGACAGCGATACCTTTTAAATTTTTCATGAATAGGTTCAGATGCTTTTATTGTTCCAATGATTTTTCGAGATGTGAAATGCTAAAGCAGCATACAATTTCTATGCACCCTCACTGTGACATTAGTTTTAAAAGTATGAGCCTACATAACAGGTGCGATGGGATCCAGATCAAAATTGACATTGCCAATCTCTCGTGCAAGCTTTGTTTTGAAACCTTGGATGATATGGAAAGTTTATTCGAACATTTGACGTCAGAACATAAGATTCGCCTCGACAAAACCGTAGTGACGCATCTGCAAGCGTTTAAATTGATTGAAGATAACTTTCCATGTCCCTTTTGTGGGGAAATGTTCAGATATTTTAGCTTACTTTTGAGGCATGTGAGTAAAATGCATAcagataataaatttatatgcacTTACTGTGGCAAATCGTTTCGGACAAATCCCAGTTTGCGTGCGCACGTCGTCTCTATGCACAGGAGTATTTGTAGATATAAATGTGACTGCGGACTAGTTTTCACAACGAATACCAATCTAAAGGTTCATATGGGCAGAGCTCATGGTGCGAAAGTGGTCCAGTGTTCCGAATGCTCAGATAAGTTTACATCCCATTATTGGATGAAGAGGCACATGCTGGAATTCCATGACGCCGGCCACAAGTGTTCGTATTGCGGCATGGCATATGTTAAGAACTCTGCGATGGTGAACCACGTGCGACGGTTCCATCTGAAAGAGAGAAATGTCGAATGTCCCGTTTGTTTTGAAAGATTCTTTGATGCTCAACGTCTGAAAATGCACATGGTGAAGCATGTAGGGGAAAGAAACTTTCACTGTGATATATGCGGAAAGAAGTTCTTgtggaaaaaaaatcttagaggTCACATGCAATCTCATAACAAAAATGGCAATagttaa
- Protein Sequence
- MNSANYHRRKNLQILFNNTTLIPFKWRMKYLCFYCGRHLADYSDLKGHTKNHGDCSDSDRAIKLVKAPDSEVKIDVSEISCEICMELFDSFDDIVSHLIGKHNLPYNRNVDLMITTYRLSDLKCLSCERGFRFFRQLVSHMNNDHPNSCFLCHECNQTFNKKRDLDHHIRVYHKKEYSCQKCFQNFVSNSELQHHRKNAHVSTCNLCFKTFSSENRRLDHMKRDHDTEGAKCGFCHKIMTTEQSFLRHAAQCTVRENKSGETIVVEDDGKRSRPVKEIRNDIACVLNKSTAIPFKFFMNRFRCFYCSNDFSRCEMLKQHTISMHPHCDISFKSMSLHNRCDGIQIKIDIANLSCKLCFETLDDMESLFEHLTSEHKIRLDKTVVTHLQAFKLIEDNFPCPFCGEMFRYFSLLLRHVSKMHTDNKFICTYCGKSFRTNPSLRAHVVSMHRSICRYKCDCGLVFTTNTNLKVHMGRAHGAKVVQCSECSDKFTSHYWMKRHMLEFHDAGHKCSYCGMAYVKNSAMVNHVRRFHLKERNVECPVCFERFFDAQRLKMHMVKHVGERNFHCDICGKKFLWKKNLRGHMQSHNKNGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -