Aio025364.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- Zbtb41
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000035.1:3996982-3998358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.1e-05 0.007 17.5 2.1 1 23 146 168 146 168 0.99 2 11 2.8e-06 0.00022 22.2 2.9 1 23 174 197 174 197 0.96 3 11 4.2e-06 0.00032 21.7 1.3 1 23 205 227 205 227 0.98 4 11 6.8e-07 5.2e-05 24.1 2.1 1 23 233 255 233 255 0.98 5 11 9.3e-06 0.00071 20.6 6.6 1 23 261 283 261 283 0.97 6 11 1.9e-05 0.0015 19.6 0.9 2 23 290 311 289 311 0.97 7 11 4e-06 0.0003 21.7 1.8 1 23 317 340 317 340 0.96 8 11 1.4 1e+02 4.3 0.3 2 12 346 356 345 364 0.71 9 11 0.12 9.3 7.6 0.5 2 23 371 393 370 393 0.95 10 11 1.6 1.2e+02 4.1 0.1 1 23 399 424 399 424 0.89 11 11 0.00049 0.037 15.2 0.6 1 23 430 453 430 453 0.92
Sequence Information
- Coding Sequence
- ATGGATAATAATGTATGTAGACTATGTAATCAGACAGGTGCTGACACGTATATTTTCCAAGAAAGACttgatgatatttctattagcaaaaaaatattgtattgctgttctaatatacaaataaacgaAGGCGATGGTTTCCCCTCGCATGTGTGCAGCTACTGTGAGCAGGAACTGCAACATTGCTACAGATTCGTGCTAAAATGCGAAGATACagataaaaaacttaaaaactacGCCGCTCAGTCTATCGATTCTTATTTCTGCCAACCTAAAGTGGAAGTTAAAGTCGACATAAACGCAGATGAAGATAATTCTTATGATGATATAAACGAACCTGACAGTAAGTATGACGTAAAGTCGGAGCATTTTGAGGAAAAAGAGCTGCCCAAAAGGAGATACAAAAAGAGGCTTAAATATAAACCGATCGAACCTTATCAGTGCTATGACTGTAACCGCAAATGTCCGTCGCGTTCAGCCTTATTGATACACAAGAGAGTGCATACTAATGAAAAGCCTTTCAAATGCTCTTACTGTGAGAAACAGTATAAGGACCGTAGCAATCTAAAACGCCATGTAGATAGGAATCATAAGTGCGGAAGAGAAAGGAATTTTATATGTGAACACTGCGGGAAAGGCTTTTTCAGCAAGAGAGACGTAGTTGTGCATATGAGAACACATACTGGTGAAATTCCATATACATGCAATATTTGTTCAAAGAGTTTTTCACAAATAAGCAGTTTACAAAGACACAAACTACGCCATAAAGGTGAAAAATCTCACACATGCCCTACGTGCCATAAAAGCTTTTGTACTAAAGAAGAATTACGAAACCATTTGTTGGTCCACActgcagaaaaaaaaatctcatgcCCAATCTGccatatactttttaaataccaaAGTAATGTTAACAAGCATTTAAGAGTCCACAGGGAACCAAATAGATTTGTTTGTAATTACTGTGGTCGGAAATTTAACTTCAAAGGCAGTCTCAAGACTCATATAGACAAGCAACATTCAGAAAAGTCTGGATATTGCAGTATTTGTTTGAAAAGTTTCCCAAACTTTGAGGTTCATATGTGGAGGCATACAGGTCACAGGCCATTGAAATGTGAGCTGTGCTCAAGCAGTTTCTTTGAACTAAAGGCTCTGGGTCGCCACATTAATTATAAGCACAAACAGACAGAAAAATACAAGTGTTCTGCAGAAGGGTGTTCGTTAGGCTTCCCTTCAAGACCAATGTTGGAGTTCCATACAGCCAAAGTTCACAGTTTGGACATTCCGTACCCGTGTGATAGGTGTTCTAGGGggttttatagaaaaaatgatCTTGCGAGGCATAAAATTGGGACTCATAAAGAAAGATTACTCTAG
- Protein Sequence
- MDNNVCRLCNQTGADTYIFQERLDDISISKKILYCCSNIQINEGDGFPSHVCSYCEQELQHCYRFVLKCEDTDKKLKNYAAQSIDSYFCQPKVEVKVDINADEDNSYDDINEPDSKYDVKSEHFEEKELPKRRYKKRLKYKPIEPYQCYDCNRKCPSRSALLIHKRVHTNEKPFKCSYCEKQYKDRSNLKRHVDRNHKCGRERNFICEHCGKGFFSKRDVVVHMRTHTGEIPYTCNICSKSFSQISSLQRHKLRHKGEKSHTCPTCHKSFCTKEELRNHLLVHTAEKKISCPICHILFKYQSNVNKHLRVHREPNRFVCNYCGRKFNFKGSLKTHIDKQHSEKSGYCSICLKSFPNFEVHMWRHTGHRPLKCELCSSSFFELKALGRHINYKHKQTEKYKCSAEGCSLGFPSRPMLEFHTAKVHSLDIPYPCDRCSRGFYRKNDLARHKIGTHKERLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -