Aio005323.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000005.1:5110218-5113279[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.027 2.1 9.7 1.3 2 23 9 30 8 30 0.94 2 16 0.015 1.1 10.5 0.7 1 23 37 60 37 60 0.93 3 16 0.28 21 6.5 9.0 1 23 67 90 67 90 0.96 4 16 0.011 0.82 10.9 2.3 1 23 96 119 96 119 0.96 5 16 0.0012 0.095 13.9 1.2 1 23 125 147 125 147 0.97 6 16 3e-06 0.00023 22.1 0.9 1 23 153 175 153 175 0.99 7 16 4.1 3.1e+02 2.8 1.2 1 23 247 270 247 270 0.89 8 16 0.15 12 7.3 1.5 2 23 292 314 291 314 0.92 9 16 0.011 0.87 10.9 3.1 3 23 338 358 336 358 0.95 10 16 9.2e-05 0.007 17.4 0.6 1 23 362 384 362 384 0.98 11 16 0.064 4.9 8.5 0.7 1 23 389 412 389 412 0.94 12 16 4.2e-05 0.0032 18.5 1.3 1 23 418 441 418 441 0.96 13 16 0.044 3.3 9.0 1.2 1 23 448 471 448 471 0.95 14 16 0.00036 0.027 15.6 1.5 1 23 477 499 477 499 0.96 15 16 1.3e-06 9.7e-05 23.3 0.6 1 23 505 527 505 527 0.99 16 16 2.5e-06 0.00019 22.4 3.0 1 23 533 555 533 556 0.95
Sequence Information
- Coding Sequence
- ATGAATACACATAATCCGACATGTATATGTTCTTCGTGCGGTAAAGGGTTTCTAACCAAAGTCAAGCTAAAGTCTCATCTCGTAATCCACGGCAACGGAGATCGCAAGTTCCGATGTACAAAATGCGGGGAGGTGTTTCTGTCAAGAACTTTGATGGATAAACACTTAGCGTCTAAACACGGAGTAGCGGCGAGCCATTATAAATGTCGCCACTGTGCGGAAACTTTTACAAGTTACCACCATAGATTGAAGCATTTGAAAGAATTTCATAATAAGGTTATAGAGTACCCTTGCACGTTATGTTCAGCGGTATTCTCAAGGTATAACCTGAGAACGAAGCATATTAAGGAATGTCATATGAGATTGAAGACGTTCTCATGTACTCACTGCGATGATAAGTTTGTGTCAGCGGCTCAGCTGAGGATGCACTTGGTGAAACATGTGGGAAAGAGGATATACAAATGCCAAGTTTGTAACAAAGCATATGCTAGAATGAGAACGTTGAAGGAGCACATGAGAATCCACAATAACGATAGGCGATTCGTTTGCGAGTTCTGCAATAgaagaaagaagaaagaaataCACATAAAGACTGAGGTGGAATTTGAGACAGAGAATGGCATAGCGCTTGTTGCCGAAACACGGGACGGTGACGAGAGGCGAGCTACGTTtagaaataacattaaaaatatcttggAATCGTGTACCGCCTACCCTTTCAAATATAGAAAGGGTACATACCTATGTTTCTTTTGCAAAGACAGCTTTCTGGAACCCAACAACTTGCGGGATCATACTCGACTTAAACACTCTGAGATCAGCCAGGTGAAACCCAGGAAATACGAGCCgcttaaaatagatttttcCATGACACATTGCAAGATCTGTGGTGTCCAAATACATGATTATTCGACGCTAAAAGCTCATTTAACTCTCGATCACGGGATAGTCATTGACCTTACTTACGGCGAAAGTGTTTTACCCTACAAGCTCAGCAAAGACAACCATCTTTGCCAAATTTGCGGGAAGCGTTACGAAGTGTTCCTAAGCCTTCACAAACATATGAACGAGCATTATGACCATTTCATATGTGAAACATGCGGGAAACGATTCGCCACGTCTCAGAGAATGGTCAACCACGCACGGACGCACGAAAAAGGTGATTTTCCTTGTAAGCGGTGTTCGGAATCGTTCCAATCATACTCATCGAGGTACGCCCATGTGGCAAAAGTACACAAATTGAATAAGAGATACAAATGCCCGATATGTGACGAAAGATTCGCATCATATAAGCATAGGTTAAAGCATATGAACGCTGTGCACGGAGAAAAGACTGCAGTTTTTCCATGCCCATCCTGTCCGAGGGTATTCGACTTGTGTAGCAGACGGACGGCGCATATAAGATTCCAGCATCTTCAGGAACGGAAGCACGTGTGCTCTGTCTGCGGAATGAAATTCTTTACAAACTACGAGCTTCAAGAACACTCAATCAAGCACGGCGGTGAGAGGATATACCAGTGCGACGTCTGTAAGAAAGCGTACGCAAGGTTGAAGACATTACGCGAGCACATGAGGATCCATAACAATGATAGGAGGTTTATATGCCCGATTTGCGGGCAGTCGTTCATACAGAATTGCAGCTTAAAGCAACATACGAGAGTGCATCATCCGCCGCATTTAAAGGATGTCTTTTGA
- Protein Sequence
- MNTHNPTCICSSCGKGFLTKVKLKSHLVIHGNGDRKFRCTKCGEVFLSRTLMDKHLASKHGVAASHYKCRHCAETFTSYHHRLKHLKEFHNKVIEYPCTLCSAVFSRYNLRTKHIKECHMRLKTFSCTHCDDKFVSAAQLRMHLVKHVGKRIYKCQVCNKAYARMRTLKEHMRIHNNDRRFVCEFCNRRKKKEIHIKTEVEFETENGIALVAETRDGDERRATFRNNIKNILESCTAYPFKYRKGTYLCFFCKDSFLEPNNLRDHTRLKHSEISQVKPRKYEPLKIDFSMTHCKICGVQIHDYSTLKAHLTLDHGIVIDLTYGESVLPYKLSKDNHLCQICGKRYEVFLSLHKHMNEHYDHFICETCGKRFATSQRMVNHARTHEKGDFPCKRCSESFQSYSSRYAHVAKVHKLNKRYKCPICDERFASYKHRLKHMNAVHGEKTAVFPCPSCPRVFDLCSRRTAHIRFQHLQERKHVCSVCGMKFFTNYELQEHSIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRFICPICGQSFIQNCSLKQHTRVHHPPHLKDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -