Aio005335.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000005.1:5150805-5155967[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 10 7.5 0.2 2 23 28 50 27 50 0.92 2 18 0.19 15 7.0 0.1 2 23 75 97 74 97 0.91 3 18 0.11 8.1 7.8 1.9 2 23 120 141 119 141 0.96 4 18 0.01 0.77 11.0 1.3 2 19 146 163 143 165 0.83 5 18 2.7 2e+02 3.4 2.3 1 21 175 194 175 195 0.89 6 18 0.0049 0.37 12.0 0.2 1 23 202 225 202 225 0.93 7 18 0.00016 0.013 16.7 0.1 1 23 232 255 232 255 0.95 8 18 1.6e-05 0.0012 19.8 0.1 2 23 261 282 260 282 0.96 9 18 9.2e-07 7e-05 23.7 0.6 1 20 288 307 288 310 0.95 10 18 0.039 3 9.2 4.1 1 23 401 424 401 425 0.94 11 18 1.2 90 4.5 0.0 2 23 451 473 450 473 0.90 12 18 0.034 2.6 9.4 0.1 1 23 521 543 521 543 0.94 13 18 0.0065 0.49 11.6 2.0 1 23 548 571 548 571 0.96 14 18 0.68 52 5.3 0.2 2 20 579 597 578 601 0.87 15 18 0.00017 0.013 16.6 1.3 2 23 609 631 609 631 0.97 16 18 0.12 8.9 7.7 10.7 1 23 637 659 637 659 0.98 17 18 5.3e-05 0.004 18.2 0.3 1 23 665 687 665 687 0.97 18 18 0.00013 0.0095 17.0 5.9 1 23 693 716 693 716 0.97
Sequence Information
- Coding Sequence
- ATGTCCATCGCGAGACAGAACGCCCGGACGGTAATTCAGTATACAACAACGTATCCGTTTAGGCTCCCGGGCACCACGTTGGTTTGCGTTTACTGCTGCGAGAGTTACCCAGACCCTGAGGGATTCAGAAAGCACATGGAAGATGTCCACAGAAAGTCCAATTTGTCAATTGCTTTTACGCACGTTCCTGAAAGTTACGTGAAAGCAGACGTCACGAATCTGAGTTGTAGGATCTGCAATGAAACGTTCGATAAGGTTCAAGAAGCCGCAAAACATTTAAATGCCGTACATgacaaaaatattgatttagatTATGATGTTGGTTTGCAgccgtttaaaataaaaaaggatatgCTCATGTGTGCTGTATGCGGCCATAATGCGCACAATCTCCGCACACTTAGCAGGCACATACAGACGCATTTTTTCCAATGCACTTGCGACTCGTGCGGCAAATCGTTCGCCTCGTCCAATTCGCTTCAATTCCACATCGTTAACACCTGCCGGCGCGGAACCAAGAAGCATTTTTGCAGAAAGTGCAAGGGTTATTTCGATAATGACGAGTTGAAGAAACATTACGAAACGTCCAAAATGTGCTGCCAGCATATTTGCGGCGTCTGTGGAGAGCGTTTCGGGTACTGGAAATCGAAGCAAGCTCATATGGAGGAGGTTCACGCTATACCGAGGAAGAAATATCCGTGTCCTCAGTGCGAATTGGTATTCACTAAGGCCGATTTGTTGAGGCAGCATTTTAAACTCGCTCATACAAGTGATTATTGGGTGTGCGGAAATTGCGGAATCAAATTCGACAGAGAGTATAACTTGAACAGACATTTACTCGTACATACTGGAGAGAAATCGTTCAAATGTAACGTTTGTGACAAAGCTTTTCCAAGGAAATCTACTCTGACCCAGCATATGTGGATTCACAGTGAAGTCAAGAAGCACAACTTTAATAACATATACGCTGAAGAAGAGGATGCTAACGTAAATTCGGAACGTAAAAATACTGAAACTAAAGTAGCTAAGTCTCTTGGAAATGATACTAATGTAGCAAATATTAATCCAGATGCAGACCTTAAATCAAACAGTAATAGTAAAATCGCACCAAAGTCAGATTTAGTTAAgcatcgtaataatattaaagagatATTGATATGTACGAATGCAACAGCGATCCGACGTTACGGTGGAATTGGATACACTTGCTGTTACTGTGAAGAACAATATGAGACACCATTGCAACTGAAAAAACACACCCTTGAAACTCATCATGATGTGACACAAGCTAACTTTATGAAATCGATGAATATGACAGAATATGTTGTTAAACTTGACATAACTTCACTACGTTGCAAACTTTGCAATGTTGGGATAGAGACACTTGAGCAATTGATCGAGCATCTAGTAAATATGCATGAAAGGAAAATCTATAAAGACATAAATAATCATATCTTTCCCTTTAAATTTGATAGCGATGTTCTGAAGTGCTCAATATGCTGTCTAACGTTTCAAAAGTTCAGAATACTTGCCAACCACATGCACATACATTATAGGAATTTCATTTGTTCCATGTGTGAAGCTGGATTCGTTAATCGTAACGCTCTAGCTCAGCATTCCGTGAAACATCGTACGGGTAATTTTACGTGCGAATATTGTGAGAAAGAATTTGAGACATTCTCCAAAAAGAGAGTTCACGAGAGACTTACGCACACACACGGTGATCAGTTGAATAAATGCGCATATTGTGTGGAAACTTTCAAGGATTACAGAAAAAAGGAAGCTCATGTTGTAGCCGTTCATGGAGTCCGTCCAGCCGCGCCAAAATGTCAGTCGTGCGAAAAAGTTTTCAGCAGTAGAAAGTTACTGAGCATTCATATAAAAAGGGACCATTTAATGGAGAGGCCGCACAAATGTATGCACTGCGATATGAGGTTTTTCTCGACGACACATTTGAAGCATCATTTAGTGACTCACACTAAGACGAAGGAATTCGCGTGTGACGTGTGTTTGAAAGCGTTCGGCAGGAGGAAGACTTTACTCTCGCATATGCGGATTCATGATGCGGAGAAACGGTTCAAATGTGAACATTGCGGTCAGAAATTCGTACAGAAGTGCAGCTGGAGAATACATATGCGAAATAAACACGCTGACATAGTGTAG
- Protein Sequence
- MSIARQNARTVIQYTTTYPFRLPGTTLVCVYCCESYPDPEGFRKHMEDVHRKSNLSIAFTHVPESYVKADVTNLSCRICNETFDKVQEAAKHLNAVHDKNIDLDYDVGLQPFKIKKDMLMCAVCGHNAHNLRTLSRHIQTHFFQCTCDSCGKSFASSNSLQFHIVNTCRRGTKKHFCRKCKGYFDNDELKKHYETSKMCCQHICGVCGERFGYWKSKQAHMEEVHAIPRKKYPCPQCELVFTKADLLRQHFKLAHTSDYWVCGNCGIKFDREYNLNRHLLVHTGEKSFKCNVCDKAFPRKSTLTQHMWIHSEVKKHNFNNIYAEEEDANVNSERKNTETKVAKSLGNDTNVANINPDADLKSNSNSKIAPKSDLVKHRNNIKEILICTNATAIRRYGGIGYTCCYCEEQYETPLQLKKHTLETHHDVTQANFMKSMNMTEYVVKLDITSLRCKLCNVGIETLEQLIEHLVNMHERKIYKDINNHIFPFKFDSDVLKCSICCLTFQKFRILANHMHIHYRNFICSMCEAGFVNRNALAQHSVKHRTGNFTCEYCEKEFETFSKKRVHERLTHTHGDQLNKCAYCVETFKDYRKKEAHVVAVHGVRPAAPKCQSCEKVFSSRKLLSIHIKRDHLMERPHKCMHCDMRFFSTTHLKHHLVTHTKTKEFACDVCLKAFGRRKTLLSHMRIHDAEKRFKCEHCGQKFVQKCSWRIHMRNKHADIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -