Aio021072.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000023.1:9250036-9276219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0072 0.55 11.5 0.2 1 23 481 504 481 504 0.97 2 11 9.8e-05 0.0075 17.4 0.6 1 23 530 552 530 552 0.97 3 11 4.7e-06 0.00036 21.5 4.3 1 23 558 580 558 580 0.96 4 11 0.00037 0.029 15.5 3.7 1 23 587 609 587 609 0.99 5 11 6.4e-06 0.00049 21.1 0.4 1 23 615 637 615 637 0.93 6 11 1.1e-06 8.6e-05 23.5 0.6 1 23 643 665 643 665 0.98 7 11 5.5e-06 0.00042 21.3 2.0 1 23 671 694 671 694 0.96 8 11 0.00037 0.028 15.5 4.2 1 23 700 723 700 723 0.94 9 11 2.1e-05 0.0016 19.5 0.5 2 23 730 751 729 751 0.97 10 11 4e-06 0.0003 21.7 1.7 1 23 757 779 757 779 0.98 11 11 0.013 0.97 10.7 0.0 1 23 785 809 785 809 0.91
Sequence Information
- Coding Sequence
- ATGAACAATTGTTGCTTTATATGCAACTGTAATTCCGTCGTGTCGTTGAGGAATTCTTCGTACTTGTTTGGACATAATACATTTGAATCCGGCAGCAAACTACATGAAATAGTTtctgaaataatagaaaaacctTTAAAAGAGGGCGAAGTCCATTCCAGCATAATCTGCAAGAGCTGCTTTAAAACCTGTTCCGCTTATGATGCCACTAAAACCAGCTTAATATCACTGAAATTGAATTTGTTAAACCAATTCAAAGCATCGTTAAGCAGTCACAACATCGGATATGATACGTGTAATGCAGCTGTTAAGACTAAGCCAGTAGAAGCAACTGGTGGTAACACAGCGAAGAAGGCAACCCGTAGATTGGTACTGCCAGCGTCGAAATTACAGCCGTTGCCGCCTGATTTGCTCTTGAAACTTAGCAAATTCGTTGGCTTGAAGACTTTCGACAATAACACAAAAGATAAGtCATCACCATCGCCAGTGGTCACGACCACCGCGTCACCGTCGTCGGTGACCACTGCAGCGAACAAAGACCAACAGACGTATTTCCTTTCAAATATAGCCAACGTTTTCGACGAACCACCTAGTTCGAACTGTTCAAGCGATGTCGCGAAGAGCTTCAACCTGAGCAAGGAGCTGGAGGATGATGCGATAGTTATTGAAGATGAGAATAGCAGCGTTAATGAGGGTGTTAGCGTTGAAGAGGAAGGTGGTGGTGTTGCTGAAAGCGATGCGGTTGCTGTTTCTGATAACCTTAGCGAACATGACGGCGATCCTTTGAAGATTGACCCAGacTGTGCGTTCTCCGTAATGCCTGTGACATCCACAAATGGGAATCTTGTACTTGAAGTCAAAGGCGTGAAGCCAAAATCAAATACTCCCAAAGAAACGGACTACGATGAGATAGAAATGATAAGGTCTTACCTTGAGAATCAGAATTCAGAGAATGACAACAAGTATGTACTCGGCGAGCTCGAGATACTGAACCAGGGAGACGAAGAGAACCCAGGACATACGATCGTCATCTACGACGGCAGTGAGCTGTCATTGATGGTGCCCGATGGCAGCTCGCAGCAGAGCTGCGAAACTATTGACAACGGTGAAGGccaagACTCAAACGATGAATCTCAGATCGAGTTGCAGGTATCAGGCGACGAAGAGACGGCAAACGCTATCATCGCGGCGGCGCAAGAGCAGGggGGCGCTTTTATAAAGGTGGGGTCGGGAGAGATGTACCGCGTACAGTCGGTCCAGAGCAAAATAGAGGAAGATGGGGAGAAACAACAACCCCTACAAATGGTGGTCAAAGACGGGGATAAATTCAAATGTGTGCTATGcgataacaatattaaaaaggGTAACAAGTTGAAGCCATTCCTGTCAGATGCTAAAGGTATGATGCAGCACCTCAAGGCTGAGCACGACGCGAGGCTCTACATCTGTTCCCTCTGCGGAGTGCTCGTGAGGAAGAGGTCTGACTACACGAAACACGTTATGACGGTGCACGGGTCGCGAGCGCCGCCGCCTGGAGGAGCAGGCGGGGACGCCGAGGGGGGCGAGGGGACTGGGCGCTGGCGGGCGCACGTGTGTAGCGTGTGCGGCCGCTCCTACAACTCGCGCACGCTGCTCGCCGAGCACGCGAACACGCATTCGGGCGCGCGCCCGCACGCGTGCTCGCGCTGCGGGAAGAGCTTCGCGTCGAAATACACCTTGCACGCGCACATGAAGACGCACGCGgaaCGACCGCGTCCCTACCAATGTTCAAAATGCTTTAAATCGTTCCTGACTCAGCAGAACCTAACCCAACACGAGAAGACACACTCCGGCGTGAAGGATTTCGTATGCAGCGTTTGCAATAAGGCGTTCAGTACTCAGCACAATTTGGAAGTGCACGGCGTTGTGCACTCGAAGGCCCGGCCGCACCGCTGCACGGTGTGCCCAAAGGCGTTTGCACGAGCGGCTGAGCTGAGGGATCACCGCCGGACTCATACCGGCGAGCGTCCGTTCTCGTGCGACATGTGCGGCGCGTCGTTCACGCAGCGGTCGAACCTGCACTCGCACCGGCGCGCGACGCACTTCGGCGAGAAGCCGCACAACTGCCCGCACTGCCCCAAGCGGTTCAAACGGAGACGtctgTTGGATTATCATATAAAGGCGTCGCACACTGGCGAGCGTCCACTAGAATGCGAGATATGCCAAGCCACCTTCGTGTATCCCGAACATTACAAGAAGCACATTAGAATCCACAGCGGGGAGAAACCGTACAAATGCGAGATATGCGGCAAAGCGTTCAGTTCGCGCGACAACCGCAACACGCACCGGTTCACGCACAGCGACAAGAAGCCGTACGAGTGCCTGGCCTGCGGCGCCGGCTTCATGAGGAAGAACTTACTCTACGCGCACATGAATGTCAGCGGGCACTTGGCTGAATCGATTGTGGTGAACCAACCAAGAGTTACGAAAGTGTCTGCAGCAAACATAAACGCGCAAATAGTCGACGTAGAAACCAAAGATTATGATACGATAATACCGACCGAAGCTGAGGAGGGCGTCATACGATTGATACAGATCAAACTACCCGACGGAAACAACGGATGGATGgctgttaataattaa
- Protein Sequence
- MNNCCFICNCNSVVSLRNSSYLFGHNTFESGSKLHEIVSEIIEKPLKEGEVHSSIICKSCFKTCSAYDATKTSLISLKLNLLNQFKASLSSHNIGYDTCNAAVKTKPVEATGGNTAKKATRRLVLPASKLQPLPPDLLLKLSKFVGLKTFDNNTKDKSSPSPVVTTTASPSSVTTAANKDQQTYFLSNIANVFDEPPSSNCSSDVAKSFNLSKELEDDAIVIEDENSSVNEGVSVEEEGGGVAESDAVAVSDNLSEHDGDPLKIDPDCAFSVMPVTSTNGNLVLEVKGVKPKSNTPKETDYDEIEMIRSYLENQNSENDNKYVLGELEILNQGDEENPGHTIVIYDGSELSLMVPDGSSQQSCETIDNGEGQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVGSGEMYRVQSVQSKIEEDGEKQQPLQMVVKDGDKFKCVLCDNNIKKGNKLKPFLSDAKGMMQHLKAEHDARLYICSLCGVLVRKRSDYTKHVMTVHGSRAPPPGGAGGDAEGGEGTGRWRAHVCSVCGRSYNSRTLLAEHANTHSGARPHACSRCGKSFASKYTLHAHMKTHAERPRPYQCSKCFKSFLTQQNLTQHEKTHSGVKDFVCSVCNKAFSTQHNLEVHGVVHSKARPHRCTVCPKAFARAAELRDHRRTHTGERPFSCDMCGASFTQRSNLHSHRRATHFGEKPHNCPHCPKRFKRRRLLDYHIKASHTGERPLECEICQATFVYPEHYKKHIRIHSGEKPYKCEICGKAFSSRDNRNTHRFTHSDKKPYECLACGAGFMRKNLLYAHMNVSGHLAESIVVNQPRVTKVSAANINAQIVDVETKDYDTIIPTEAEEGVIRLIQIKLPDGNNGWMAVNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -