Aio000781.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000001.1:15879706-15889500[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0001 0.008 17.3 3.3 1 23 202 224 202 224 0.98 2 29 0.0023 0.17 13.0 0.6 2 20 252 270 251 272 0.93 3 29 0.0003 0.023 15.8 0.1 2 23 301 323 300 323 0.96 4 29 0.013 0.96 10.7 1.6 2 23 373 394 372 394 0.97 5 29 0.00084 0.064 14.4 0.3 1 23 411 433 411 433 0.95 6 29 0.0057 0.43 11.8 3.2 2 23 469 491 468 491 0.94 7 29 0.00063 0.048 14.8 3.9 2 23 527 549 527 549 0.97 8 29 0.00073 0.056 14.6 0.9 1 23 599 622 599 622 0.96 9 29 0.00017 0.013 16.6 0.1 1 23 687 709 687 709 0.98 10 29 0.0072 0.55 11.5 5.2 2 23 721 742 720 742 0.96 11 29 0.014 1.1 10.6 1.1 2 23 754 775 753 775 0.96 12 29 0.017 1.3 10.3 0.6 1 23 785 807 785 807 0.98 13 29 0.0024 0.18 13.0 3.5 2 23 834 855 834 855 0.96 14 29 0.00099 0.076 14.2 5.1 1 23 866 888 866 888 0.98 15 29 0.0037 0.28 12.4 3.1 1 23 896 918 896 918 0.98 16 29 0.0013 0.1 13.8 0.1 2 23 938 960 937 960 0.97 17 29 3.3 2.5e+02 3.1 1.0 1 23 978 1000 978 1000 0.91 18 29 0.45 35 5.8 4.8 1 23 1007 1029 1007 1029 0.98 19 29 0.0028 0.21 12.8 3.2 2 23 1040 1062 1039 1062 0.95 20 29 0.0073 0.56 11.5 0.2 2 23 1085 1106 1084 1106 0.95 21 29 8.6 6.6e+02 1.8 6.0 2 23 1149 1171 1148 1171 0.94 22 29 0.0011 0.081 14.1 0.2 2 23 1187 1208 1186 1208 0.95 23 29 4 3.1e+02 2.8 4.5 5 23 1218 1236 1215 1236 0.94 24 29 0.019 1.5 10.1 1.1 2 23 1247 1269 1246 1269 0.94 25 29 3.1 2.4e+02 3.2 7.2 2 23 1286 1304 1286 1304 0.92 26 29 0.39 30 6.0 1.6 2 21 1308 1327 1307 1328 0.93 27 29 0.7 53 5.2 1.8 2 23 1375 1396 1374 1396 0.93 28 29 0.0042 0.32 12.2 0.4 2 23 1407 1429 1406 1429 0.96 29 29 2.5 1.9e+02 3.5 2.9 2 20 1467 1485 1466 1487 0.92
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTCGGGAAATGCAGGCTCTGCCTAAAGTTGGGCGATTTCTACTCCATTTTTACCGTAGACAATGCGTTACAATTGGCAGAAATGGTGATGGAATGTTCTCGGGTGAAGATATATGAGGGAGATGGATTGCCAGACAAAGTGTGTTCGGAATGCATACAGAAACTTAGCAGCGCTTACATATTCAAGCAGCAGTGTGAGAGATCAGATGAAGAACTTAGGCGGAATTACGTACCACCACCAGGTTTCAGTATAAGTCCACCTCCACCAAATCGTCAAAGCAGTGATTCTGCCTTTTCCACACACACTGATAGCTCCAATCATACGAAGCCACCATCAACCGAAGGCAAGACAACACCAGTTAGGAGCACACGAAAACGCAGCATTGAGAGTGACAATGCATCTGTCAGTAGCAGACACAACTATCCACCCAGCACCTCCAAGCGTGTAGAAGAACTAAGGAGATCCAGCAAAAGACCCCGTTATCAGTCCGGCAACACGTCTCAACTGGATTCTGATTATGACGATTCTGGGTCAAATTATTTACCTGAAAGTGCAGGAACAGATTCAGATGAACCATTACTTACAAATATACACAAGTGTGATAAGTGCCCTAGATCATTTAAATCACTTCAGAGCTTAAATAATCACAGTAGAATTCATAAAAAGGAGAGCTTAGGAAAAAATGCTGTAGTTAATATACCCAATCGCACTGAAGACGTTTCTCAAGATGACGACAAACTTACCTGTGGGAAGTGtgataaaaactttaaattaaagattatgttaaaaagacaTCAAGAGCAATGCGGTAAGATCCCACAAGTATCGCCAAAGAAGGAACTTTTAGTATCACTAGAACCAATAGACGGGGATAATGCAATAAGAATCGAATGTGAAATTTGCCTAGCAAAGTTTAAATCTGTAGAGAATCTTCAGAAACATATGAAAGTGGTTCATGCGGCTGTACTTAAGAAGCATGAGGAAGAAATTACAGGGGACACCTCAGTTCCATGCGTTTATTGCGGAGAAAGTTTGTATGACTATTACTCGCACAATGCTCATTTCTCAGCTTGCAAGAAAAAGAAGGGGGATTCCGCATCTCTAAAATGTACTATTTGCGACAAAGTGATGACCAGAGAATGCTCTTACATCCTACACATTAAGATGCACTTCATGCCGCGCAGCGATGGGCAGGATAATGAGCCGAAGCAAGATATACACGAGTGTAGGATCTGCGATAAGAAATTGAGTTCCCAGGAAGAGCTGATCACGCACTTAGCTGCTCACGTCTCCAGTATCGATGATAATGCAGCAGATGATGATGAATATAGATCAAATTTTGTAGAAGAGACAGAATCTCCAGTGTCAAATCAGAGCACAAGTGGGTCACTGCACTGCGATATTTGCGACAAACAGTTCACGTACAAGAAAGCATTTCTGACACACCGACAGCTGAAGCATTCCAATGACGATGTGAAACAGGAACCACCAGAAAAGGACTCTAGTTTACCCAATGTGACTTATAAAGAGTCTGACTCAGAATCTAGCGTCGATGGAGAAGACAATACATGTGATATATGTGAAAAGCAATTTTCTTATAAACGATTATTGATACATCACAAGCGGACGAAGCATACAATGGTAGCGGGAACCAAACGCTCAAAGGTGAACCTAAAAGACTGTTTGGTGAGGTGTCTCATATGTGACCTGCAGATGAAAGTGAGTGTAATCAATGAGCATAATCAGAAACATATCGCATTGAACATGAAGCCGAGAAATGTGTACACGTGTGCTGAGTGCGAAGAAAACTTTAAGAGTTGCAGCGGTTTGGCGAATCATATCAAATTTATACACAGGTTGAAACAACCTATACCGAACAAATCAAAGCCGAAGAAATTCATGGGGGGTAACTTGGCGGATTTTTGTGAGGTCGTTGTGACAAAAGCGGAACCGCTGGACTGGATCCAGGGTCACAACGACTTTGGAGAGGTTCCGGCAAACGGGAACACAGCGACACAAGTCGAGCCAGTTGTCCAAATGGGAAAATTCACTTGTCCTATATGTGGGAAGATGATGCCCACTCTGATCTCGCTCAAGCGCCACATTAACTGGCACAGCAATGTTGGAAACAATATTCAGAAGAAGATTGAATGTTTCGTCTGCAAAGAGACCTTTAGATTCCAATGCCACTACAAAATCCACATGCGCGAACACTACCACGACACAAATCTGGACCCAAAACACCTCACTTGCCCCATTTGCAACAGAAAGAGCAAGCACCTTCGTGCCGCCACGGCGCACATGAACTACCACAAGCAAACCCGCTTCCAAAACAAGGATTATCAGTGTGCTATATGCAAACGCGTATTCCAGTTCAGAAAGGTGTATTTGTCACACATGGCCATACATTATAAAAGGGGGGAGAGCATCCTCAATAACGCTTTGCCAGGCCTCGTTGATCCTAATAATGTAAATGATGGTACAAACACTTGCACGCTGTGCGGTAAGGTGTGTGATTCAGAAAACTCCCTAAAGCACCACATGAGCTGGCACAAATCAAAGACACTCCTATACAGCGCCAGACATGAGTGCGAAATCTGCCATCTCCAGTTTACGAATAAAAAGACACTGGAATACCACACGAGAATGCATTACGAAGACGAAAACGGCCCTTTCAAATGCAATGTATGCGGGAAAGGATATACGTCAGAGGAGTACTGCCGCAGGCATGTTAAATCTCATAATTTTGACCACGTTTCCCATAAAAAACGTCTTGAGAAACTCAGGAAGAATAAAGTTAAATGTCCAATATGCCCGCGCTATTATCCAGAACTAGCGAAGCTTATACGACATCTGAGGAGGACACATCCAGAGAGCAAGATGATCAAGGAAGACCCAGATGCGCCTCCGCCGCAGTACTACTCGTGCAAACTGTGCGCAAAGGAGTTTTTAGATGAAAGGAGACTCCAACACCACGAGGAAGCGCATTTGAGGAAACCGGAGTTTTTCAAATGTAAATTCTGCGGCAAGAAAACTATTTCTCTGAGATATCATAGAGTCCATATTAAGTCACATTTAACAACGAAACATACGGACAACCCTCTACAATGTCCGCACTGTGACGAGAAATTTGTCAAAGGTTACGATTTGCATCATCACTTACGTGACGTTCATGACATCAACGAGACCTGGATAGCCGAGCGTACCGAACAAGTCCTCAACGGTCCTCTGAAAGACCTACAGTGCTCTGTGTGCCTCAAAATACTGGCAAGCAAAGGGAATTTTCAACGTCACATTGACTATCACAACTCACTTCGGTGCAATTACTGTTTCGACTACTTCAGCGGTTTAAGGTTTTTGGAGGGGCATTTAGCGCACGCATGCGAGAAGAAGCAGCTTATAGGCGATACGGAAATATATCCGAAGAAAATAAAATGCCACATTTGCTACAAAGCTTTCCATTTGCAAGTAAAGTTAGACTGCCATCTTAGAACACAACACGACATTAAAGTCAATCGGGAAGAGTCGACCGAGAAAAAGGACATCGTCTGTGATTATTGTTTCAAAGTGTTTGAAAACGAATATGCTCTTAACACACACAAGATATATCACAGAACCATAGGATACTACGGCTGCATTTATTGCAAGAGGAAGTTCAACAATATGACGCTCTACAGGAAGCACAAAAACCATCATTTCTCGCAGTTAAACGTTGATAACCCTACGAAATGCGAGCACTGCGATGAAACCTTCGTCGCTTTCAGGGAATTTATATATCACATGAAGGACGTTCACGGTGACGACAAAGAGTGGATCGTCATGCCTAAAGACTCCAAGGAAGAAACTTGCCATATTTGCAACAAGGTTTTCCATAATTTGCATAAACATTTGGCGTATCACGAAGAGAACAAGTGCAAAAAATGCGGCGAATATTTTTACTCCACAGTGGATTTCGATAATCATCTATGTCTTATTGAAAGCGACGAAGAGGAAACTGTGGCTGTTGCTGGCGATGCGCCGAAATATCAGGAATGTCGCTTCTGTTTCAAACCTATCACAAAGAGTTCAGAACGAAAGCACAACCAAATACACAAAGGATCAGGGGCGATATCGTGTCGATTCTGTCCGTGTAAATTCAAGACGATAGACGCATTCAACATACACGCGTTTTCACACCGAAGCAGAAAATATAACAAGAGGCCGATAAAGTGTAGGAAATGCGGCGAAAACTTCGTAAAGTACGGCCCATTTATTAGGCACATGAAACAAGTTCACAAGTCTACAAAGAAACTCCACTACCGGGCAACGATAATGCCCGAGAGGTGTGTGGTTTGTGGTGACGATTTTCCGAACCTTCACAACCATTATCGAGCGCATTTGCTCAATCAGTGTCAACTTTGCcgtaaatattttacatcatCCAGAGTGTTTTCAAAACACGAATGCGACAAGGAAGATTCAGACCCGAGCAAAGTGTTCACGAGTGATGAAAATCTAATCGCTTTAATTAACGCTTACGTGCCTAAAGACGAAAAAGACGATGAAAAGTTCTATGGTTATAGCGAAGAAGAGGTTGAGGAAGAACAACCTAACCTCAAATTACAACAAGAGGAGAGTCAAGATGAGAAATTATCGCTCAGTTTTGTTCATACTCCTATCATATCTGACGTTTTATCGCTATGCCAAAAAGAGCAAGTGCGAAATCTCTACGGAGATGGTATCACCCGAGATGGAGATATCATTAGTCAAGACGGAGATAGCAAAAGTCAAAATAGTGATGTGAATGTGATAGATTTGAGTGACGACGAAGCCATTGATATTAATGATGAGATTCCCGTTGTTCTCATAGATGATGACGATggttag
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMVMECSRVKIYEGDGLPDKVCSECIQKLSSAYIFKQQCERSDEELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNHTKPPSTEGKTTPVRSTRKRSIESDNASVSSRHNYPPSTSKRVEELRRSSKRPRYQSGNTSQLDSDYDDSGSNYLPESAGTDSDEPLLTNIHKCDKCPRSFKSLQSLNNHSRIHKKESLGKNAVVNIPNRTEDVSQDDDKLTCGKCDKNFKLKIMLKRHQEQCGKIPQVSPKKELLVSLEPIDGDNAIRIECEICLAKFKSVENLQKHMKVVHAAVLKKHEEEITGDTSVPCVYCGESLYDYYSHNAHFSACKKKKGDSASLKCTICDKVMTRECSYILHIKMHFMPRSDGQDNEPKQDIHECRICDKKLSSQEELITHLAAHVSSIDDNAADDDEYRSNFVEETESPVSNQSTSGSLHCDICDKQFTYKKAFLTHRQLKHSNDDVKQEPPEKDSSLPNVTYKESDSESSVDGEDNTCDICEKQFSYKRLLIHHKRTKHTMVAGTKRSKVNLKDCLVRCLICDLQMKVSVINEHNQKHIALNMKPRNVYTCAECEENFKSCSGLANHIKFIHRLKQPIPNKSKPKKFMGGNLADFCEVVVTKAEPLDWIQGHNDFGEVPANGNTATQVEPVVQMGKFTCPICGKMMPTLISLKRHINWHSNVGNNIQKKIECFVCKETFRFQCHYKIHMREHYHDTNLDPKHLTCPICNRKSKHLRAATAHMNYHKQTRFQNKDYQCAICKRVFQFRKVYLSHMAIHYKRGESILNNALPGLVDPNNVNDGTNTCTLCGKVCDSENSLKHHMSWHKSKTLLYSARHECEICHLQFTNKKTLEYHTRMHYEDENGPFKCNVCGKGYTSEEYCRRHVKSHNFDHVSHKKRLEKLRKNKVKCPICPRYYPELAKLIRHLRRTHPESKMIKEDPDAPPPQYYSCKLCAKEFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLRYHRVHIKSHLTTKHTDNPLQCPHCDEKFVKGYDLHHHLRDVHDINETWIAERTEQVLNGPLKDLQCSVCLKILASKGNFQRHIDYHNSLRCNYCFDYFSGLRFLEGHLAHACEKKQLIGDTEIYPKKIKCHICYKAFHLQVKLDCHLRTQHDIKVNREESTEKKDIVCDYCFKVFENEYALNTHKIYHRTIGYYGCIYCKRKFNNMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREFIYHMKDVHGDDKEWIVMPKDSKEETCHICNKVFHNLHKHLAYHEENKCKKCGEYFYSTVDFDNHLCLIESDEEETVAVAGDAPKYQECRFCFKPITKSSERKHNQIHKGSGAISCRFCPCKFKTIDAFNIHAFSHRSRKYNKRPIKCRKCGENFVKYGPFIRHMKQVHKSTKKLHYRATIMPERCVVCGDDFPNLHNHYRAHLLNQCQLCRKYFTSSRVFSKHECDKEDSDPSKVFTSDENLIALINAYVPKDEKDDEKFYGYSEEEVEEEQPNLKLQQEESQDEKLSLSFVHTPIISDVLSLCQKEQVRNLYGDGITRDGDIISQDGDSKSQNSDVNVIDLSDDEAIDINDEIPVVLIDDDDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -