Aio025184.2
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000035.1:585501-594228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00033 0.025 15.7 1.7 1 23 202 224 202 224 0.98 2 13 0.011 0.87 10.9 0.9 2 23 243 264 242 264 0.97 3 13 0.0021 0.16 13.2 3.9 2 20 272 290 271 293 0.92 4 13 0.014 1.1 10.5 0.3 2 23 307 328 306 328 0.98 5 13 0.0014 0.11 13.7 4.9 2 20 336 354 335 357 0.93 6 13 3.4e-05 0.0026 18.8 1.6 1 23 363 385 363 385 0.99 7 13 0.0009 0.069 14.3 5.0 1 23 391 413 391 413 0.98 8 13 2.9e-05 0.0022 19.0 2.5 3 23 422 442 420 442 0.95 9 13 0.00018 0.014 16.5 0.2 1 23 448 470 448 470 0.95 10 13 4.8e-05 0.0037 18.3 2.2 1 23 476 498 476 498 0.98 11 13 2.6e-05 0.002 19.2 0.7 1 23 504 526 504 526 0.97 12 13 4.9e-05 0.0038 18.3 0.7 1 22 532 553 532 553 0.97 13 13 0.00016 0.012 16.7 0.9 1 21 560 580 560 581 0.95
Sequence Information
- Coding Sequence
- ATGGAGAACTTCCACACGAATCGGATgcttcataatattataaattgtcatataatggatttattagaaaaattaaacaacttGGAAATATGTTGTAGAACCTGCCTCAATAATACATCAGATAGGATGTACATTAACATATTTGCATTGAGAGACGATTCGGTGAGCGTAGCCGAAATGCTTGCATCATGTACTTCTATCAAAGTTAGAAGTAATGATAAACTACCTAAAAAGCTCTGTAGCACCTGTTTCAACAGTTTAAATAGCTTTTATGAATATAAGAAACATgctgaaaatattaattcaaaactCAAGGCTTATTTTAGAAAACATAGAAATGATATAACATCTTCAGATGACAtcttaaaagaaattaaaactgAGATTGAGGAGGAGGCTGTGAATAATTATCATATGTCTACTGATGAGCAATCTCAAAATTTAGTAGAAATTCCTCTTTCTCAACTCACAGAGCCGGAGTGTAGTCAAAATGGTGATATATCCTATCGAAATGACAGTACAAATGGAGATGAAAGTATGAATATTGATAATGAAATTAGAATGGGTCCGTTACATCGTCAGCTTTTACAGAAATCAAAAGTATATACCTGCGATATGTGCTCAGAAAAGTTCAATAGCcgttataaatttatacaacATTTGATCATGCATGGTCAAGAACCAAATGTGAATCCTAAAATGTCAGAGAAGTCCATTCCAACCTTGAAATGTGACACATGCTCTGCTGAGTTTAAGTCAATAAACTCATTATCAGCTCATAAAAAAAAGCATGTGGGGAAAGATCGAATCCTATCATGCGCGATTTGCGATAAGGTATTCCAAAAATTAAGTCATTTGAAACGTCATAAATTATGTCATGAAAATGAAGATAACAGTAAGAAGCCTGATGTAATTGTGAAATGTGATATTTGCTCTGCTGAATTTCAATCAATAAATTCTTTATCAGCTCATAAAAGAAAGCATGTGGTGAAAGATAGAGTACTCTCATGCTCAATTTGCAagaagatatttaaaaagttgagTCATTTGAAACGTCACGAATTATGTCATGAAGGCAACCGTCCCTATAAATGCTCAATTtgcttaaaaacattttcaactGAAACACTTTATAATGATCACATTAACAAACACAAAGGCATCAAACCTCACAAGTGTCCTATCTGTATGAAATCATTCTTTCATCTTTCAACATTGTCTACTCATATAAAAAGTCACATAGATCATGAGAAAACTCATTTATGTTCGACTTGCGGCAAGAAATTTGACTCCAGCTCAAATCTGAGCCAACATGTTTTGAGGCATAAAGGTGTTAAAACATTTGCTTGTAGCTTGTGCCCtagaaaatttattactaaagGAGAGCTCAAATCCCACGGCGTAACGCATACTGGTGTACGTGCCCACAAGTGTGACATATGTGGAGCGACATTCACCAAGGGCAGCTCATTAACTAAACACAAGCTCAGGCATACAGGGGCCAAGCCTTTCAGATGCGACCTATGCCCTACAaaGTTTAGAAGCAGTACAGCGCTAAAACGTCATGAGCTCATACACACCGGTGAGAAGCCATTCAAATGCGACTTCTGCGAGCGACCGTTTAGACAGAAAGGTGATATGGTGCGCCATCAACGAACGCAGTGTGCGGACAAGCAGTACAAatGCACACAATGCAAAGTGACATTTGAGTCGAAGAATGACTTACAGAATcacataacaaaatattatatcaaatctGAAAATCCTGAAGCTGCTGTGCCTTCTATAGAGAGTGCTCCAGATGTAGCCAGCGGTGTGTCAGATATAATCAACAATGTGCAAGATGTAGCCAATGATGAACAAGATATAGCTAGTGCTGTGCCAGATACAGCTAATGTCGTGCCAGAAAAAGTTAGTAATAAGCCAATAATACTCAGTAATGTGCCAGTAATGTTGAGTGAACTACCAGTGATACTTAGTGACGTGCCAGTAATTCTCAGTGATGTACGAGTAACAGCCAGGGGATTACCAGATGGTTCTAGTGTTGTACCTCTTTATGATAACAATTTGCAAAGTTGA
- Protein Sequence
- MENFHTNRMLHNIINCHIMDLLEKLNNLEICCRTCLNNTSDRMYINIFALRDDSVSVAEMLASCTSIKVRSNDKLPKKLCSTCFNSLNSFYEYKKHAENINSKLKAYFRKHRNDITSSDDILKEIKTEIEEEAVNNYHMSTDEQSQNLVEIPLSQLTEPECSQNGDISYRNDSTNGDESMNIDNEIRMGPLHRQLLQKSKVYTCDMCSEKFNSRYKFIQHLIMHGQEPNVNPKMSEKSIPTLKCDTCSAEFKSINSLSAHKKKHVGKDRILSCAICDKVFQKLSHLKRHKLCHENEDNSKKPDVIVKCDICSAEFQSINSLSAHKRKHVVKDRVLSCSICKKIFKKLSHLKRHELCHEGNRPYKCSICLKTFSTETLYNDHINKHKGIKPHKCPICMKSFFHLSTLSTHIKSHIDHEKTHLCSTCGKKFDSSSNLSQHVLRHKGVKTFACSLCPRKFITKGELKSHGVTHTGVRAHKCDICGATFTKGSSLTKHKLRHTGAKPFRCDLCPTKFRSSTALKRHELIHTGEKPFKCDFCERPFRQKGDMVRHQRTQCADKQYKCTQCKVTFESKNDLQNHITKYYIKSENPEAAVPSIESAPDVASGVSDIINNVQDVANDEQDIASAVPDTANVVPEKVSNKPIILSNVPVMLSELPVILSDVPVILSDVRVTARGLPDGSSVVPLYDNNLQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -