Aio005391.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000005.1:5467969-5470254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0026 0.2 12.9 2.3 1 23 33 55 33 55 0.99 2 18 0.005 0.38 12.0 0.2 2 23 81 103 80 103 0.94 3 18 0.0053 0.41 11.9 0.2 2 23 126 148 125 148 0.96 4 18 0.00063 0.048 14.8 0.2 3 23 156 177 155 177 0.96 5 18 0.016 1.2 10.4 0.1 3 23 184 205 183 205 0.97 6 18 0.15 11 7.3 1.7 1 23 209 232 209 232 0.97 7 18 0.00076 0.058 14.6 2.5 2 23 239 261 238 261 0.96 8 18 0.21 16 6.8 0.1 2 23 268 289 267 289 0.96 9 18 0.0021 0.16 13.2 0.1 1 16 295 310 295 312 0.91 10 18 0.00025 0.019 16.1 1.5 1 23 382 404 382 404 0.98 11 18 1.9 1.5e+02 3.9 0.1 2 23 430 452 429 452 0.93 12 18 0.28 21 6.5 1.3 3 23 476 497 474 497 0.94 13 18 0.0011 0.087 14.0 1.3 3 23 505 526 504 526 0.96 14 18 0.012 0.91 10.8 0.1 2 23 532 554 531 554 0.96 15 18 0.0031 0.24 12.6 3.8 1 23 558 581 558 581 0.97 16 18 0.00059 0.045 14.9 1.3 2 23 588 610 587 610 0.96 17 18 0.0011 0.085 14.0 0.1 2 23 617 638 616 638 0.96 18 18 8e-06 0.00061 20.8 0.5 1 23 644 667 644 667 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGCAAAGATAGATGGTTAAAATTGAAAGAGAATGTGATAGTATTACTCTCAAATACAAGTCTAATGCCCTTCCGCTGGTTAAAAAGCTCCTATAGATGTTTTTACTGTTACGATATGTTTAAAGAGCCTAGAGATTTAAAAGAACATCAGAAAACACATCAAGTGATGGACGAGATCAAAGGAATCATGGATAAATATTTGGAACCGGTCGTTTATATCGACGTCTCGAGTCTATCTTGCAAACTATGCCCAGAATATTTCGGAGATTTAGATCACTTGGTAAATCATCTTGCCAGTAATCATGAAATAAGTTTGAATAAAGACGTTATAGGTTGCGTGAAGCCGTTTAAATTGAACGACATCACCGTGGAGTGTGTCATATGCGAGAAACAGTACACGACCTTTGCGTTCCTACTTCTCCACATGAATAAAGACCATGCCGGCTTATCGTCAATTCTGTGCGAAATTTGCGGTCAAAGTTATCGGACAGAGCGGCTTTTACGTGACCACGTAAATCAGGAACACGAAAAGAAGCCAACTTTGTGTAATATTTGCGGGGAGACGCTACCGAGCGCGTATCGAATGAGAACGCATCTACAACGAGTACACAACAAAAGATACAAGTGCTTCGTGTGCCCAGACACCTTTGAAAATCATTACAAGAGATCCCAACATATGATAGTCGTTCATAGGAAGAGGGATGAACAGAAATGTCCTCATTGCTCTTTGACGTTTGTATACAGGAGTACAATGTTGAGGCACGTGCGAGAAAAGCATCTTAAGGAGAAGAATGTGGTATGCAGCATGTGCGGATGGGAGGGTTTCGGCAAAGCGAGATTGAGCCTTCATATGAAGAAGCATAGTGATGAGAGAAACTATCAGTGTCCATCATGTGATAAAGCTTTTAAAACACAAGCAAATGTGGAAGACATGAGAGTAAAGACAGAGATAGAAGAACCGGTCAAAAAACGTCATAAAAAGATAAGAGGACTTAGGGAAATAGTCAAGGAGAATTGGGGTTTAGTAAAAACAGAGAGAGGATTACGAGGAAAAGAGAAATTGCAAGTTCTGAGGGAGAGCGGGACACAGCTTCTCGTAAATTCGACAGTGATGCCTTTTAGATGGCTCAAAAGCTCCTATAGATGTTTTTACTGTTACGAGGTCTTCATAGAACCTAAAGATTTGAAGACCCACCAGTTCACGCACCAAGATTCGGACGTTATAAAAAAAGCGATGAGCAAATACTGGGATCCGCTAGTTTACGTTGACATATCAAATCTATCCTGCAAACTGTGCCCCGATAAAATAAGCGATTTTGACGACTTGTTACAACATCTGACAGTGGTCCATCAAATCGAATTCAACAAAGAAATCCGAACTTTCGTAAAGCCCTTCAGACTTCACGATCTCACAGTACATTGCGTCTCCTGTGacaaacaatacacaaattTCGCACGGCTTttgatacatacaaataaagaGCATATTGGCGTTTCACCGATATTATGCGATGTTTGTGGACAACATTTTAAAACTGAGCGGCTTTTGCGTGATCACTACAATCAGGAACACGATAAAAAGCCTGTGCAATGCAACATTTGCGGTGAAACAGTAATAAGTCTAGCAAGGATGCGTACTCATCTACAGCGAGTTCACAACAAACGATACAAGTGCTTCTTTTGCACCGAAACTTTCGATAACCATTACCAAAGGACTAGGCATATGATTGTGGTCCATAAGAAGAGAGAAGACAACAAATGCTCGGAGTGCAACTTAAGTTTCGTGTACAGGAATCGGTTACTGAGACACATAAGGGAGAAGCATTTGCGGGAAAAGAACGTTATGTGTAATGTATGCGGTTGGGAGGGCTTTGGGAAGTCCAGTCTCAATTTGCATATGAGGAGACACAGTGATGAGAGGAACTATCCATGCCCGTCTTGCGACAAAGCGTTTAAGACGAGAAAGAATATGAAGCAACATCTTATTAATATCCATCAGAAGGGAGTGAAGGCGAGGACCGCTTTGCCGAATACaacttttttgttataa
- Protein Sequence
- MPGKDRWLKLKENVIVLLSNTSLMPFRWLKSSYRCFYCYDMFKEPRDLKEHQKTHQVMDEIKGIMDKYLEPVVYIDVSSLSCKLCPEYFGDLDHLVNHLASNHEISLNKDVIGCVKPFKLNDITVECVICEKQYTTFAFLLLHMNKDHAGLSSILCEICGQSYRTERLLRDHVNQEHEKKPTLCNICGETLPSAYRMRTHLQRVHNKRYKCFVCPDTFENHYKRSQHMIVVHRKRDEQKCPHCSLTFVYRSTMLRHVREKHLKEKNVVCSMCGWEGFGKARLSLHMKKHSDERNYQCPSCDKAFKTQANVEDMRVKTEIEEPVKKRHKKIRGLREIVKENWGLVKTERGLRGKEKLQVLRESGTQLLVNSTVMPFRWLKSSYRCFYCYEVFIEPKDLKTHQFTHQDSDVIKKAMSKYWDPLVYVDISNLSCKLCPDKISDFDDLLQHLTVVHQIEFNKEIRTFVKPFRLHDLTVHCVSCDKQYTNFARLLIHTNKEHIGVSPILCDVCGQHFKTERLLRDHYNQEHDKKPVQCNICGETVISLARMRTHLQRVHNKRYKCFFCTETFDNHYQRTRHMIVVHKKREDNKCSECNLSFVYRNRLLRHIREKHLREKNVMCNVCGWEGFGKSSLNLHMRRHSDERNYPCPSCDKAFKTRKNMKQHLINIHQKGVKARTALPNTTFLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -