Aio005370.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000005.1:5374236-5378404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.073 5.6 8.3 0.2 1 23 43 66 43 66 0.91 2 19 0.008 0.61 11.3 0.1 2 23 93 115 92 115 0.96 3 19 0.044 3.4 9.0 1.4 2 23 138 159 137 159 0.97 4 19 0.0093 0.71 11.1 0.4 1 23 163 185 163 185 0.95 5 19 0.0039 0.3 12.3 2.0 1 23 190 212 190 212 0.98 6 19 0.21 16 6.9 3.4 1 23 220 243 220 243 0.87 7 19 0.00096 0.073 14.2 2.1 1 23 250 273 250 273 0.98 8 19 0.00034 0.026 15.6 2.6 1 23 279 301 279 301 0.97 9 19 6.5 5e+02 2.2 0.3 1 11 307 317 307 321 0.90 10 19 6.7e-05 0.0051 17.9 2.5 1 23 457 480 457 480 0.95 11 19 0.012 0.93 10.8 0.8 2 23 505 527 504 527 0.95 12 19 0.0014 0.11 13.7 0.2 2 23 550 571 549 571 0.97 13 19 0.003 0.23 12.7 0.6 1 23 575 597 575 597 0.96 14 19 1.9e-05 0.0014 19.6 1.3 1 23 602 625 602 625 0.98 15 19 0.082 6.3 8.2 0.4 3 23 634 655 633 655 0.96 16 19 0.0017 0.13 13.5 0.7 2 23 663 685 662 685 0.95 17 19 0.00025 0.019 16.1 4.4 1 23 691 713 691 713 0.98 18 19 4.8e-05 0.0036 18.3 2.0 1 23 719 741 719 741 0.98 19 19 9.9e-05 0.0075 17.3 4.8 1 23 747 770 747 770 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAAGTAAAAAGTATCGAAAAACTGCGACCCAGTATCGAGTTAGCCTTACATCGCAATAACATAAGGGAGATTCTGTTATGGTCGAATGCCACGCCCATATTAAAATATGAAGGCATAGGGTACACTTGTGCTTACTGTGACAACCAATATCCTAAAGTGGAAGACCTTAGGGCGCATACTGTGAACAGCCACAATGATATATCACTAGCTAAATTTATGAAGAAAGGCAACCTGCATCACTTTGTGGTGAAACTTGATATTACACATCTCAGGTGCAATATTTGCAACACAAGTGTCCCAAAGCTGGACGAGTTCATGGAGCATCTTAAGATAGTTCACGAGAAAAAGATATTTGACAAGATAAAGAGTAGAATCTTACCGTTCAAGTTCGACGGAGACGCAATGCGTTGCGCAATCTGCGATCACGTCTTCAACGCGTTCAAAAAACTCATGGAACACACCAGTACGCACTTTAGAAACTTCGTTTGTGGAGAATGCGATGCGGGCTTCGTCAACCAAAGCGCGCTCCGATGTCACTCGCAAAGCCACAAAACTGGGACTTTTACCTGCTCCTACTGTCCCAAAGTCCTGAGTAACTTAAGACAAAAGACCAACCATGAGAAGAAGCATCGAAACGTGGACAGCAAATTGTATAAATGCGGATATTGCAAAGAGGCCTTCAAGACTTGCACAAGAAAGACTTTACATTTGACGGAAGTCCACGGAGTACCCCCGATTATATACAAATGTCGTGCTTGCGAGAAAACGTTTACCAATAGAAAAGTCTATAGGGTCCATATAAAAAGAGACCATCTATTAGAGAGGCACCATAAATGTGCGTTTTGTGAAAAAGGTTTCTTCCGGTCAGAGCAGTTGAAGGAACATATGGTGCGGCATACGGGGAGTAGGGAATTTGAATGCGAGGCTTGTAAGAAAAAGTTCGCTGCCAAGGaagtGTTTCATTGGTTGTATGCTGCAATATATGACAGACAGAATACTCTATTTGATCCAGTGCACACGATACAAGATGATTGCGAAAAGACTACGGAGCAGTACCCCTCCGGTAGCGCAAAGCGTGCATCTCTTCGCCCTCGTCTCGCGAAGCGCAAGTCTGATACACGTGCGGTGACTACACCGCAAAGCAAAGCATCGTATGCCAgtAAGACTCCGGGTACTAGGATAATCAGAATAGAAAAGACGGGCAAACCAACGACAAATAGAATTTTCAGTCCTAAGACAACGGACGAACTCGGATCTGCTGCAGATGTTATTGCGAAAGAGacgttaagaaataaaatcaatCTTAAAAATATCCTACTCTATTCAAACGGTAACCTCATACGACGCCAAAGCAGTACTGGTTATCATTGCTCCTTCTGTCCCAAAAGTTTCTCGGAACCGAGTGACCTAAAGACtcattttttaaaagaacaCAATGAAAAACAAATTGAGGATAAGTCCTTACGAGCAGTTGAACATGTTATAAAGTTAGACATAACGGATTTAAAATGCAATCTATGTGAGAAAAGTTTAAGCAAATTGGAAGATTTAATAGGCCATTTGAAACACGATCACAATAAACTGGTGTACCCGGACGTAAAGAATCAGCTACTACCGTTCAAATTCGACAGCAATGAGTTACGCTGCGCTTTATGCGGTATAGAAttcattaaattcaaaatgCTCCAAGAGCACATGAATTCTCACTACCCCAATTACCTCTGCAACATTTGCAGCGCTGGGTTCGTTACTAATTTTATGCTCAAAAGCCATACCAGCCGACATGGCAACGGGGAATACAAGTGTGAGCAATGCGGGAAGACCTACTCAAGTGCATTGAATAGGTTAAATCACATGAGGCGATCCCACCTAGGACGAGGCAAAAGACATGGGTGTGATTATTGCGAAGAAAGATACTCGTCCTATACTTCAAAGCTCAAACATATGGCAAACGAGCATGGAGTTGCGCTCCCTGAGTTGAAATGCCTGGCCTGCGACCGAACCTTCAACCTCCAACGAGCGTTATCCAAGCACATCAAAAGAGACCATCTCTTAGAACGGAAGCATAAGTGCAGCGAATGTGAAATgaggttttataataaatacggtCTGAGTAAACATATGACGAAGCATACTGGGTTGAAGGAGCACAAATGTTCTGTTTGCTTGAAGTCATACGGAATGAAGAGCACGTTGAAAGCTCATATGAGAATCCACGAAGACGACAGGAGATTTGCGTGCAAGCATTGCGGCCAGGCCTTTGTGCAGAAGTGTAGTTGGAAGAGCCACATGCGGTCTAAACATGGAGAACTGGTTTAG
- Protein Sequence
- MKEVKSIEKLRPSIELALHRNNIREILLWSNATPILKYEGIGYTCAYCDNQYPKVEDLRAHTVNSHNDISLAKFMKKGNLHHFVVKLDITHLRCNICNTSVPKLDEFMEHLKIVHEKKIFDKIKSRILPFKFDGDAMRCAICDHVFNAFKKLMEHTSTHFRNFVCGECDAGFVNQSALRCHSQSHKTGTFTCSYCPKVLSNLRQKTNHEKKHRNVDSKLYKCGYCKEAFKTCTRKTLHLTEVHGVPPIIYKCRACEKTFTNRKVYRVHIKRDHLLERHHKCAFCEKGFFRSEQLKEHMVRHTGSREFECEACKKKFAAKEVFHWLYAAIYDRQNTLFDPVHTIQDDCEKTTEQYPSGSAKRASLRPRLAKRKSDTRAVTTPQSKASYASKTPGTRIIRIEKTGKPTTNRIFSPKTTDELGSAADVIAKETLRNKINLKNILLYSNGNLIRRQSSTGYHCSFCPKSFSEPSDLKTHFLKEHNEKQIEDKSLRAVEHVIKLDITDLKCNLCEKSLSKLEDLIGHLKHDHNKLVYPDVKNQLLPFKFDSNELRCALCGIEFIKFKMLQEHMNSHYPNYLCNICSAGFVTNFMLKSHTSRHGNGEYKCEQCGKTYSSALNRLNHMRRSHLGRGKRHGCDYCEERYSSYTSKLKHMANEHGVALPELKCLACDRTFNLQRALSKHIKRDHLLERKHKCSECEMRFYNKYGLSKHMTKHTGLKEHKCSVCLKSYGMKSTLKAHMRIHEDDRRFACKHCGQAFVQKCSWKSHMRSKHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -