Basic Information

Insect: Automeris io
Gene Symbol: PRDM2
Assembly: GCA_036320925.1
Location: JAUDJH010000017.1:344714-348023[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 1.4 10.2 6.1 2 23 124 146 123 146 0.95

2 14 2.3e-05 0.0018 19.3 0.3 2 19 153 170 152 172 0.94

3 14 0.00043 0.032 15.4 0.5 3 23 184 205 183 205 0.90

4 14 5e-05 0.0038 18.3 1.5 2 23 213 235 212 235 0.94

5 14 5.6e-06 0.00043 21.3 0.5 2 23 242 264 242 264 0.96

6 14 0.0028 0.21 12.8 6.9 1 23 271 294 271 294 0.92

7 14 0.00033 0.025 15.7 0.7 2 23 301 322 300 322 0.97

8 14 8.6e-05 0.0065 17.5 0.7 1 23 337 360 337 360 0.93

9 14 0.024 1.9 9.8 4.0 2 23 369 391 369 391 0.95

10 14 3.9e-07 3e-05 24.9 1.5 2 23 397 419 397 419 0.97

11 14 0.012 0.94 10.7 3.3 2 23 427 449 426 449 0.95

12 14 1.6e-05 0.0012 19.8 1.3 1 23 455 477 455 477 0.98

13 14 7.5e-08 5.7e-06 27.2 0.7 1 23 483 506 483 506 0.98

14 14 0.03 2.3 9.5 1.2 2 22 515 535 514 535 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	1.4	10.2	6.1	2	23	124	146	123	146	0.95
2	14	2.3e-05	0.0018	19.3	0.3	2	19	153	170	152	172	0.94
3	14	0.00043	0.032	15.4	0.5	3	23	184	205	183	205	0.90
4	14	5e-05	0.0038	18.3	1.5	2	23	213	235	212	235	0.94
5	14	5.6e-06	0.00043	21.3	0.5	2	23	242	264	242	264	0.96
6	14	0.0028	0.21	12.8	6.9	1	23	271	294	271	294	0.92
7	14	0.00033	0.025	15.7	0.7	2	23	301	322	300	322	0.97
8	14	8.6e-05	0.0065	17.5	0.7	1	23	337	360	337	360	0.93
9	14	0.024	1.9	9.8	4.0	2	23	369	391	369	391	0.95
10	14	3.9e-07	3e-05	24.9	1.5	2	23	397	419	397	419	0.97
11	14	0.012	0.94	10.7	3.3	2	23	427	449	426	449	0.95
12	14	1.6e-05	0.0012	19.8	1.3	1	23	455	477	455	477	0.98
13	14	7.5e-08	5.7e-06	27.2	0.7	1	23	483	506	483	506	0.98
14	14	0.03	2.3	9.5	1.2	2	22	515	535	514	535	0.93

Sequence Information

Coding Sequence: ATGGATTTCAATGCGGAACATATCACTGTGAAAGTTGAGATTTTTGATGAGGAAAATGATGAagactttatttataatacagaagataatGTAAATGAGAATAAAGAAGacaattatgaaaataataaagagtCACTTACCTTAGATAACAAAGATATGGAGGTAGAAAATACAGAGGAAAATGAAGCACAATTGTTATGTAATAGAAAAGATTTAAGTGAGAGTAAAGAAGAATTTGATGGTACTAATAAAGagttaagttataataaaatggaTGCGGAAGATGCAGATGTTACAGAAGACGATGAAAATTTGGATAACACACAAGAGGCAATAGAAGACGATTCCAGCAAAGAAGGCAAAACTATATATTGTCATATATGTCATgagatagttaaaaataaagcgCGTCTGCGTCATCACATCAGGCATGAGCATGCAGATGAATTTTTTCTAGAGTGCAGCAAGTGTGACAGAACATTCAGGTCCCAAGCTAATCTTAAATCGCACGAGATATGTTCCCATCCCAAGCCCGGGACTGAAGTCGCATGCGATGAGTGCGGAAAGGTAtttgcaaacaaaaaaaaattaggcaaTCACAAATACTACACTCACGCCGCTCCAGACGAGAGCGTCAGCTGCGAGATATGCAAGAAAACCTTCAAAAAGCAGTACAAACTGAACGTCCACAACCGCCAAGTGCACTTGCTGAACCTTACAGCCACTTGCCAGGAGTGTGGCAAGGTCTACAAGAATGAAATACTTCTCCGGAGACATATGAAGTGGAGCCACCCGTTGGACGAGCTCGATCACGAGTGCGAGGAGTGTGGCAAACATTTCCCATCGTACAAGCATTATAAGAAGCATAAAGATAACTCCCACTCCGCCCCAGAGGGCTTGAAGTGTGTGCTCTGCGAGCGAGTGCTGGCTAATAAGAAATCAATGACTAGGCATATGCAAACCCATGCACGGGGCAAGGTATTTCCTAAACCGAAGGCTGAAGGAGATTTTCCCTGCACGATATGCGAAAAGCGATTCAACACCAAGACTTCCCTGTACTGGCACGGGGAGAAAGACCACTCGGAACACTACCAGCTCAAGAATTCCTGCCACATATGCTTCAAGGAGTACGCAGACCACCACGTCCTGAGGAGACATCTGGAATCGATCCACTCCATCGAGACGGCGACCTGTAAGATCTGTAACAAGACGTACAAGTCGCCGATGAACCTCGAGAGCCACATGAGGACGACGCACGCTCCTCCAGAGGCAGCCAAGACTTGCAAAATATGCCAGAAGGTATTCAAATGTGCCCTGCATTTGAGGATACATATCAAGGCAGTGCATCCGCCCGGTAAGGAGTTTGTATGTGACATCTGCAACAGACCGTTCGTGTCCAAGCGATACCTGTTCGAGCATAAGAAAACTCATGCAACCATGAGGGATTTCGAGTGCGAAGAGTGTGGGAAGACCTTCAAGCGCAAGGTGGATGTCAACAAGCACATCAGGAGAGTCCACAGGAAGCCAGCGAAGCCGGTGTCGACGTGTCTCAAGTGTGACAGGAAGTTTACCAGCGATGCGAGGTTGCACATACATATAAAGAAGTGCAAAGGAGAAGAAACGCCGCTGCCGGTGGTCAAGATTGAAGTTGTCGACGAAGAAATCAATACAGAACTATCCTCGTGA
Protein Sequence: MDFNAEHITVKVEIFDEENDEDFIYNTEDNVNENKEDNYENNKESLTLDNKDMEVENTEENEAQLLCNRKDLSESKEEFDGTNKELSYNKMDAEDADVTEDDENLDNTQEAIEDDSSKEGKTIYCHICHEIVKNKARLRHHIRHEHADEFFLECSKCDRTFRSQANLKSHEICSHPKPGTEVACDECGKVFANKKKLGNHKYYTHAAPDESVSCEICKKTFKKQYKLNVHNRQVHLLNLTATCQECGKVYKNEILLRRHMKWSHPLDELDHECEECGKHFPSYKHYKKHKDNSHSAPEGLKCVLCERVLANKKSMTRHMQTHARGKVFPKPKAEGDFPCTICEKRFNTKTSLYWHGEKDHSEHYQLKNSCHICFKEYADHHVLRRHLESIHSIETATCKICNKTYKSPMNLESHMRTTHAPPEAAKTCKICQKVFKCALHLRIHIKAVHPPGKEFVCDICNRPFVSKRYLFEHKKTHATMRDFECEECGKTFKRKVDVNKHIRRVHRKPAKPVSTCLKCDRKFTSDARLHIHIKKCKGEETPLPVVKIEVVDEEINTELSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -