Aio016342.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Automeris io
Gene Symbol
-
Assembly
GCA_036320925.1
Location
JAUDJH010000017.1:1438761-1460714[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.9 68 4.9 7.6 1 23 255 277 255 277 0.98
2 25 2.1 1.6e+02 3.7 4.1 1 23 284 306 284 306 0.93
3 25 0.088 6.7 8.1 3.1 1 23 310 332 310 332 0.97
4 25 0.042 3.2 9.1 1.4 1 23 337 360 337 360 0.94
5 25 0.0025 0.19 12.9 0.1 1 23 364 387 364 387 0.95
6 25 0.13 10 7.5 1.0 2 23 469 491 468 491 0.94
7 25 0.0029 0.22 12.7 1.0 2 23 507 528 506 528 0.95
8 25 6e-06 0.00046 21.2 2.4 1 23 534 556 534 556 0.99
9 25 3.4e-05 0.0026 18.8 0.2 1 23 563 585 563 585 0.96
10 25 0.0048 0.37 12.0 2.5 1 23 591 614 591 614 0.95
11 25 0.78 59 5.1 2.3 1 23 758 780 758 780 0.96
12 25 0.0047 0.36 12.1 0.2 2 23 786 807 785 807 0.97
13 25 0.0065 0.5 11.6 4.9 1 21 813 833 813 835 0.96
14 25 1e-05 0.00078 20.4 1.2 1 23 841 863 841 863 0.98
15 25 0.089 6.8 8.0 3.6 1 23 869 891 869 891 0.97
16 25 3.2e-05 0.0024 18.9 0.2 1 23 897 919 897 919 0.97
17 25 0.013 1 10.7 1.0 1 23 925 947 925 947 0.97
18 25 0.0051 0.39 12.0 1.4 1 23 953 976 953 976 0.95
19 25 0.0043 0.33 12.2 1.7 1 23 982 1004 982 1004 0.97
20 25 5.5e-07 4.2e-05 24.4 0.5 1 23 1010 1032 1010 1032 0.99
21 25 0.43 32 5.9 0.2 1 23 1036 1058 1036 1058 0.96
22 25 0.014 1.1 10.5 0.9 1 23 1067 1090 1067 1090 0.97
23 25 0.00026 0.02 16.0 1.9 1 23 1096 1118 1096 1118 0.96
24 25 0.00051 0.039 15.1 1.9 1 23 1124 1146 1124 1146 0.97
25 25 0.00083 0.063 14.4 3.6 1 23 1152 1174 1152 1174 0.96

Sequence Information

Coding Sequence
ATGGacagaaaacaatttaaatttaatgaaaaccACTTGTGTGATTACTATGAAGAGCTGATGGGACTTTCGGCACATGACGAGAACAAACTGCCACAGAAGGTATGCTGGGAGTGCGCACATAAGCTGATTTCTTACAAACAGTTCAAATTGAAAGCCTTACGGAGTCAAGAATTCATGCTGGAATTGTTGAAGGCTTTTGAAAATACAACCCAAAATACCCTGACCTCCATCGAACAAGTAAAGGACGAACTTCGATCACGCCTGGCAGTGCGGTTCATTGATACAGATCGAGCAGACTATTGTATTGTAGAAGATGAAGCACATACATCGAAATTAGACTCAAACAGCGATGAGAAATCTATTGATGATATAGAAATACACCAAGTTGTTGTAACTGAGTGTTGTTTGAAAGAAGAAGTACCATCTGATACTGAATATATAGACGAAAATAaaccaataattaattatgtcgAAGAATCTAAGAGTAAAACAATCCATAAGATCGAAAAAAGAAAAGTGCGTATTGATTTACAAGAAAGCAGAGAATTTTCTGATACGGAACATGTAAAAGAAAAGTCAATAATTTCTGATGTTATAAGAGAGAAGAAGACAAAAGCAGTTAGGAAGATtgataaaaaaacgaaaaaagtaAAGGAAAAATTGAGCGAGGATTTATTTGAGGTGATAAATTTGACCAGATCAGAGCAACTCAAGGAAATAGAAAGTCGAAAGGAAAGTTCGAACTTCAAGTATTGCGAGTTCAAGTGCTATGATTGCTGTAAAGGATTCTGTTATGAAGATTCGTATAAACTGCACATGACACGACATACAGATCAAGCAGGACCTTTTGAATGCGACGTGTGCAAGTTGAGATTCCAGTCGCAGAGCAAATTCGGTTGCCACAGGAGACTGCACACGCAGAAGTTCTCATGCAAGCAATGTCCTTTTGTCACCACTAGAAGGCACGCGGCCAAACGTCACGAACAGTACCACAATGGTAAGAAATACGAGTGTCCGCACTGCCCGAAACAGTTCCTCAAAGTGACGACGTACATGAGTCACGTACGTATCCAGCACCCGTCTGATTTCGTGTGCGAGCTGTGCGGGTACTCGTTCATAGGCGCCAAAGGTCTCGCGCAGCACAAGAACCTCAAACACCGCTTCGACCAACTAACTGTGGCCGAGGATGGTCCGAAATGCGTTCCCTGTGAAGTCACGTTCGCTTGTAAAGAAGCCCTTGAGAGGCACCTTACGGTGTCTCCTCAGCATATAGATCCtgATACTCCAAGAAGACAACGCGGAAGACCACGAGGTTATGAAGTGGTCAATAAGATTAAAGGAAAAAGAAGGTGCGTTATCAAGAAAAGTAAATCAAATAAATGCGGACCAGATGAACCAATATCTTGTGAACAGTGCGACGCGCAACTACCGAACTCGTCATCTTACCACAGGCACTTTAGGCTGATGCACCCGGACAAGAATCGAACCAACTACCCCACGGTGAAGGCCTCATGCATGTGCGAAATCTGCGGGAAGATGTTTAagGCGTTCGCGTTGCTGGAGGATCACAGGTACTCCCACGGCGAGGCGAAGCAGTTCAAGTGCTCCGTGTGCGACAAGCGGTTCCAGAGACGGTACCGGCTGGCGGCGCACCAGCGCACGCACGCCGCGCCGCGGGAGTCCCACCCCTGCGCTGTCTGCGACAAGCGGTTCTCCTCCGCCGGGAACGTGGCGAGGCACATGTTTATTCACACTGGCTTTAAGCCCTTCAAATGCGAAATGTGTGGGAAATGCTTCCTCTATCAGAGCGAGAAGCGAGCCCACATCAGCTACGTCCACATGAAGAAACCCTGGCCCAAGAGGAATCGagggaaaagaaaaaataatactatgCAGGTGGAAATACCAGATGATGAATGTGTGGATTATAATTCCATGGCAGAGCAACTTGACGCAGCATCAACACAGCCTTCAATTGGGACTATTGAAAAAGTTTTCAATTATGATgaagaacagaaaataaaaattgaagtaGATGAGACAATCAAAGTAGAGGCAGACGAATCATCGAACATATTGTATTGGGCTCCTGAAGACTGTAATACTATGGTAGCCAAATTAGAAGGTGCACAAACAATTGCAGAGGAAGTAAGTTACCCAGAATTAAAACTTGAAGAAAACGGCCATATAGAAGCATATGTTTACTATGAATATGATGGCCAGACTGATGAGGGAATTGAGCAAAATCCTCAAGTTTCAGAAGAAGTGTTTAATTGCcatatttgtgattataaaagtGAATGGAAAAGAGATgtacgattacatttaaaaacacaCAAGCCGAAAATATTGACCTGCAACTATTGTGATTATAAAGCAGCAATAAGAGGTAACTTAATATCCCATCTTAAAACTCATAGCGATATGAAACCTTACTCCTGTAATATTTGTGATTACAAATGTAAAGTGAAACAGAATTTAGTAATACATATGAGATGCCACACGGGTGAAAAACCATATGCCTGTCCTTATTGTGACTATAAATGCAGCAACAAGGGCAGTTTAAACGTTCACCTCCTAACACATACGGGAGAGAAACCTTTTGCTTGTACACTATGTGATTTTAGATGCAAACAAAGATTCATTTTAAAAGTACATATTAGGCGACATACAAATGAAAAGCCTTTTGCATGCCCTATTTGTGATAGAAGATTTGCAATGCGTACCACACTGAAATTGCATGTCCGAATACATAGTGATAAAAGGCCTTTTGCTTGCAAACTCTGTAGTTTCCAGTCAAAGACGCTAAATGGGTTGAAAAAGCACATGCTCGTCCATAGCACTGAAAAACCTTTCGCCTGTGGTTTGTGCGATTATAAAACGAGTCGCAAGAACGCTTTACACAGACACGTCAGTAGAGTCCATAACAGGGATAAATCTTTCGCTTGTGACTTATGCGACTACAAGTGTACagcaaaaagttatttattgatGCACGCTAGGACCCACAGTAACGAAAAGCCTTTTCAATGTGACGTTTGTGGTTATAAAAGCTCCAGGAAGGATGCCTTGGAGAGACATATCAGAACACACATGGGCCCTTTCAGTTGTAACCTCTGCGAGTTCAGATCCAATGCTGTCACTGGGCTGAAGCGGCACATGATAGCTCACAGTGTCCAATCTATTGGGAAACCATTCACCTGCACCTTGTGTGATTATAGAAGTAATAAGAAGTCCATGGTCGTCAGACATGTGAATAGTGTCCACTATGGGGAGAAGCCTCACGCCTGCGTTATTTGTGAATATAAGTGTGCAACAAGAGCGAACTTAGTGAAGCATATTAGAACACATACTGGTGAAAAGCCATTTGCGTGTGAATATTGTGATTACAAATGTAAGGCTCGAGATAGCTTAACGAGACATGCCAGGATCCATTCCGGTGAGAAACCATATGCTTGTAATGTTTGTGATTTTAGATGTACACAACGGAGCAGTTTGAATAGACATAGCAAACTTCACAATAAAACATAG
Protein Sequence
MDRKQFKFNENHLCDYYEELMGLSAHDENKLPQKVCWECAHKLISYKQFKLKALRSQEFMLELLKAFENTTQNTLTSIEQVKDELRSRLAVRFIDTDRADYCIVEDEAHTSKLDSNSDEKSIDDIEIHQVVVTECCLKEEVPSDTEYIDENKPIINYVEESKSKTIHKIEKRKVRIDLQESREFSDTEHVKEKSIISDVIREKKTKAVRKIDKKTKKVKEKLSEDLFEVINLTRSEQLKEIESRKESSNFKYCEFKCYDCCKGFCYEDSYKLHMTRHTDQAGPFECDVCKLRFQSQSKFGCHRRLHTQKFSCKQCPFVTTRRHAAKRHEQYHNGKKYECPHCPKQFLKVTTYMSHVRIQHPSDFVCELCGYSFIGAKGLAQHKNLKHRFDQLTVAEDGPKCVPCEVTFACKEALERHLTVSPQHIDPDTPRRQRGRPRGYEVVNKIKGKRRCVIKKSKSNKCGPDEPISCEQCDAQLPNSSSYHRHFRLMHPDKNRTNYPTVKASCMCEICGKMFKAFALLEDHRYSHGEAKQFKCSVCDKRFQRRYRLAAHQRTHAAPRESHPCAVCDKRFSSAGNVARHMFIHTGFKPFKCEMCGKCFLYQSEKRAHISYVHMKKPWPKRNRGKRKNNTMQVEIPDDECVDYNSMAEQLDAASTQPSIGTIEKVFNYDEEQKIKIEVDETIKVEADESSNILYWAPEDCNTMVAKLEGAQTIAEEVSYPELKLEENGHIEAYVYYEYDGQTDEGIEQNPQVSEEVFNCHICDYKSEWKRDVRLHLKTHKPKILTCNYCDYKAAIRGNLISHLKTHSDMKPYSCNICDYKCKVKQNLVIHMRCHTGEKPYACPYCDYKCSNKGSLNVHLLTHTGEKPFACTLCDFRCKQRFILKVHIRRHTNEKPFACPICDRRFAMRTTLKLHVRIHSDKRPFACKLCSFQSKTLNGLKKHMLVHSTEKPFACGLCDYKTSRKNALHRHVSRVHNRDKSFACDLCDYKCTAKSYLLMHARTHSNEKPFQCDVCGYKSSRKDALERHIRTHMGPFSCNLCEFRSNAVTGLKRHMIAHSVQSIGKPFTCTLCDYRSNKKSMVVRHVNSVHYGEKPHACVICEYKCATRANLVKHIRTHTGEKPFACEYCDYKCKARDSLTRHARIHSGEKPYACNVCDFRCTQRSSLNRHSKLHNKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-