Aio016340.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000017.1:1405175-1407517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.1e-06 0.00016 22.6 4.6 1 23 6 29 6 29 0.95 2 20 0.00088 0.067 14.4 0.1 3 23 36 57 34 57 0.95 3 20 2.6e-05 0.002 19.2 0.5 2 23 66 88 66 88 0.96 4 20 0.00014 0.011 16.9 3.1 2 23 97 119 96 119 0.94 5 20 1.5e-05 0.0011 19.9 0.3 2 23 127 149 126 149 0.95 6 20 2e-05 0.0015 19.5 1.0 2 23 157 179 156 179 0.95 7 20 2.4e-07 1.8e-05 25.6 1.8 1 23 185 208 185 208 0.98 8 20 0.00069 0.053 14.7 0.4 1 23 256 279 256 279 0.96 9 20 8.8e-07 6.7e-05 23.8 1.3 1 23 305 328 305 328 0.97 10 20 0.033 2.5 9.4 0.8 3 20 337 354 335 356 0.92 11 20 0.013 0.96 10.7 0.8 2 23 365 387 365 387 0.94 12 20 0.00067 0.051 14.7 4.9 1 23 411 434 411 434 0.96 13 20 1.1e-05 0.00085 20.3 0.6 2 23 441 463 440 463 0.96 14 20 9.2e-05 0.007 17.4 1.4 2 23 470 492 469 492 0.94 15 20 0.0081 0.62 11.3 2.2 1 23 498 521 498 521 0.97 16 20 0.2 16 6.9 6.5 2 23 529 551 529 551 0.94 17 20 2.1e-05 0.0016 19.5 0.4 1 23 558 581 558 581 0.97 18 20 0.016 1.2 10.4 1.6 1 22 588 609 588 611 0.89 19 20 0.0073 0.55 11.5 2.7 2 23 625 647 625 647 0.95 20 20 3.6 2.8e+02 3.0 0.1 2 16 668 682 667 684 0.87
Sequence Information
- Coding Sequence
- ATGTATGATCTTGATTATGTTTGTGACTATTGCAACAGATCATTCACAAGGAAACACAACTTGCAGGCACACATAGATAACTGCCACATAAAGTCATCGTCCAATTGTGAGATATGTAAACAGACTTTTGGGAGTCCCACGGGCTTGCAGGTACACTTATCTCGTGGCCACAATCGCTTCGGACAGTCATTGCCTGAATGCGATCTCTGCGGCCGTGTTTTCACGAGGAAACAAAACATCATGTCCCATATGTTCACTGTTCATCTACAGCCGAATCGTCCAGAAATACGTTGCAGGGTATGCTTAAAGTGTTTCACGTCAGAGAGAAATCTACGACGGCATATGAGTCaagtacataaaataataatacagcaATCAACCTGTGATATATGCAACAAGAAGTTTAAAGGGAAAGATACACTGATAGCTCACATGGACAGTGTGCACAAAAGTGAAAGGGATATGATCCAATGCAATCTCTGTGAAAGAACTTATACTAATAACAGGAATCTTAAAAGACATGTTGAAATGTACCATGGAGAGAGAGGAGAGTTCAAATGTAATCTATGCCCAAAAGTATACTCTTCGAATCAGAGTCTAAAAAGACATATCCGTACAAGACACAACTCAGAAGATCaggaatattttaaaagtgataTCAGCCTTAAGTTGATCTCTAGTAGAGACAGTATAGAATTGCTTCATAATGAGCGAGAAAAGAGTAACATTAATTATGTTAGTGATTATAATTCAAACAGCAATGATTTCGTCTGTGCCAAATGTAACAAGAGTTTTGAAGAAGAACCCTATTTAAGACAACATGTTAAAAACGATCATTCATTTAGaaccttttataaatattgtaagaaaTCTCTGACGAAGCAGATCTCAGAAGCTAATAATCCTTTGTTTTACTATTGTGAATACTGTTCAAAAAGCTTTACAAGCATCTATGAGCTAAAAAATCATATGAAGATTATTCATGAGCAAGAATACCTATTATCTAATTGCAATGTCtgttttaagaaattttacagtaaagaaACCATGTTGAAGCATAAAGCGATGTGTCTGCCACCACAGAACGTTAACTCTTGCAGCGACTGTGACAAACTGTTCACCGATATATCGAGTTTGGAGTTCCATAAGAGGATATTCCATCCCCAATCACAAATAGCTGATTGTAATATAACCTCAACAAATACGATAGACACTGACAGTGGAGGTTCATACAAATGCCCTCATTGCGATCGCGTTTACTATAGTGATAGATCTCTCAAGCACCATGTGAAGTTAAAACATACGACAGATGAAGCAATGGAGTGTGAATATTGTGGAAAAATTTGCAGCAACAAGTATTATCTCGCATCACATATCAAGATTGTCCATAATGATCACGCTTGGGTTAAATGTGATTACTGTGACAAACTATTTAAGTCCAAAAGGAATATAAGGAGACACATTGAGTACACACATTTGGGCATGCAACGATACAAATGCATTGAATGTGAGACACTTTTTAAGGAAAAGAGAAGTTTACGGAAGCATGTTCGAACAAAACATCCCAATTCTGCATCATTTCCAGAATGCCACATTTGTCACAAGAGATTTGAGTCTGCAAAGTCATgcaaaatccatttaaagcttTTACATTCATTCAATATGAACACGCATCCGTGTGATCTGTGTCCAATATCATTTAGCTCTAATGAAGCACTGACAATTCATCTAAAGACAAAACATTTAGCCAAAGATGAGATTTACAAATGTGAGGAATGCAATTTGGTCTTCAAAGGGCAAGATGCATTCGATCAGCATAATGAACAGTGCCACATGAATGTACTATCAAATATGAAGCAAAAGATGTTACCGCGATGCGTATTATGTATTAAGGACTTTAGTACACGCAAAACTTTAAAAAGACATATAAAGAAATTCCATGATGTGTTTGATGTAGAGGAATTGGCGAACTTTGGCTCAAGGAAACCTTTATTTAACGTTGAATGTGAAGAGTGTGTGAGAAACTTCAATGATGAattcaattataatatgtatgtcaAATTGAAACACATGCGAGATTGCATTGTATTCCAATGCAAGTCTTGTAAAACTTCATACGACACCTTTGAGTACTCCCTGCAGAGGTATAAATTAACCAGCATGGATATAACCAAGGGTAAAGCAATATTGAGTGAGTTGTGTACAACAGAAATGAGTGACGAAGAATTATCCTTCTCAGGTTTTGGGTCTCTGCACGAAATCATGGAGCCGGAGAGTACAACAAACGATATAAAGGTGGAAACACATAATCTGGAAATAAAAATTGAGCCAATATCTCCATAA
- Protein Sequence
- MYDLDYVCDYCNRSFTRKHNLQAHIDNCHIKSSSNCEICKQTFGSPTGLQVHLSRGHNRFGQSLPECDLCGRVFTRKQNIMSHMFTVHLQPNRPEIRCRVCLKCFTSERNLRRHMSQVHKIIIQQSTCDICNKKFKGKDTLIAHMDSVHKSERDMIQCNLCERTYTNNRNLKRHVEMYHGERGEFKCNLCPKVYSSNQSLKRHIRTRHNSEDQEYFKSDISLKLISSRDSIELLHNEREKSNINYVSDYNSNSNDFVCAKCNKSFEEEPYLRQHVKNDHSFRTFYKYCKKSLTKQISEANNPLFYYCEYCSKSFTSIYELKNHMKIIHEQEYLLSNCNVCFKKFYSKETMLKHKAMCLPPQNVNSCSDCDKLFTDISSLEFHKRIFHPQSQIADCNITSTNTIDTDSGGSYKCPHCDRVYYSDRSLKHHVKLKHTTDEAMECEYCGKICSNKYYLASHIKIVHNDHAWVKCDYCDKLFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCPISFSSNEALTIHLKTKHLAKDEIYKCEECNLVFKGQDAFDQHNEQCHMNVLSNMKQKMLPRCVLCIKDFSTRKTLKRHIKKFHDVFDVEELANFGSRKPLFNVECEECVRNFNDEFNYNMYVKLKHMRDCIVFQCKSCKTSYDTFEYSLQRYKLTSMDITKGKAILSELCTTEMSDEELSFSGFGSLHEIMEPESTTNDIKVETHNLEIKIEPISP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -