Apul022580.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- stc_1
- Assembly
- GCA_905475315.1
- Location
- FR997769.1:2732577-2745652[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 2.3e+04 -3.7 1.6 15 19 61 65 60 65 0.81 2 13 0.025 3.9e+02 2.0 1.2 2 10 93 101 93 101 0.93 3 13 2.3e-05 0.36 11.7 18.1 4 19 109 124 107 124 0.93 4 13 2.4e-08 0.00038 21.2 13.5 1 19 160 178 160 178 0.97 5 13 4.2e-05 0.65 10.8 13.6 1 18 219 236 219 237 0.98 6 13 2.8e-06 0.043 14.6 12.4 1 19 278 300 278 300 0.88 7 13 2 3.1e+04 -4.7 2.2 6 10 330 334 330 334 0.94 8 13 0.0021 33 5.4 7.4 1 11 340 350 340 351 0.95 9 13 0.037 5.8e+02 1.4 0.6 4 10 355 361 354 361 0.92 10 13 6.7e-06 0.1 13.4 13.9 3 19 369 385 367 385 0.92 11 13 0.00025 3.8 8.4 9.6 10 18 432 440 429 441 0.92 12 13 3.6e-08 0.00056 20.6 14.4 1 17 477 495 477 501 0.85 13 13 0.00051 7.9 7.4 7.2 1 14 507 519 507 533 0.88
Sequence Information
- Coding Sequence
- ATGACTCAACGCGAACGCCTCACGGAGCAGCTAGATAAGGGCACATTAGAATGTCTGGTCTGCTGCGACAGAGTCAAGCAGTTTGACCAGGTATGGTCCTGCACCAACTGCTACCATGTACTGCATCTCCGGTGCATCAGGAAGTGGGCCATGAGCAGTATGGTTGAGGGCAAATGGCGTTGCCCAGCCTGCCAGAACACGAACGAGGCGATCCCCGGCGAGTACCGCTGCATGTGCGGCGCGGTGCGGGCGCCCGAGTACCAGCGCGGCGCTGCGGGCGCGCACACGTGCGGCCGCGCGTGTCGCCGCACCAGGGCCTGTCCGCATCCCTGCACGCTGCTGTGCCATCCGGGGCCCTGTCCGCCGTGTCAGGCTACTGTTGTCAAACAATGCGGCTGTGGCGCGGAGACCCGCTCAGTCACCTGCAGCAGCAAGCTGCCGCAGGTCTGCGGGCGCGTGTGCGGGCGCACGCTGCAGTGCGGCGTGCACACGTGCAAGAGCGACTGCCACGAGGGACCCTGCGAGTCTTGTACTGAGACTGTTACGCAAGTATGCTACTGCCCGGCCGGCAAGTCTCGCTCGGTGGCGTGCACGCTGGAGAGTGGCGGCGCGGCGCGCTGGGCGTGCGGCGAGGCGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTCTGCCGCGCCAGCTGCCACCCGCCGCCCTGCCAGCCCTGCGCCATGCTGCCAGAACATGTCAAGACCTGTCCTTGTGGGAATACGCAACTACCGAAAGACTCTCGCAAATCATGCACGGACCCCATCCCGCTGTGCGGCAACATCTGCGCCAAACCGCTGCAGTGCGGGCCCGCTGGAGACCGCCACTTCTGCAAGCTTAGCTGTCATGAAGGCCCATGTCCCGAGTGTCCCGATAAAACGGTGCTACAATGTCGTTGCGGGCACTCCAGCCGCGAAGTGCCCTGTGTTGAGCTGCCGGAGATGTACAATAACGTGCTGTGCCAGAAGAAGTGTAATAAGAAGCTGTCGTGCGGGCGTCACCGCTGCCGCACGGTGTGCTGCGCGGCGACGTCGCACCGCTGCGCCGTGGTGTGCGGGCGCACGCTGGCGTGCCAGGCGCACCGCTGCGAGGACTTCTGCCACACCGGACACTGCGCGCCCTGCCCGCGCGTCAGTTTCGACGAGCTGACGTGCGAGTGCGGCGCGGAAGTAGTGTTACCGCCAGTCCGCTGCGGCACGCGGCCGCCGGCGTGCTCGGCTCCCTGCACGCGCGTTCGCGCTTGCCGCCACCCGCCGCACCACTCCTGCCACTCCGGCGACTGCCCGCCCTGCGTCGTGCTCACCACTAAGCGCTGCCACGGAGATCACGAGGAACGAAAAACAATACCCTGCTCTCAAGAAGAGTTTTCGTGCGGTTTACCTTGCGGGAAGCCGCTGCCGTGCGGCAAGCACACTTGTATCAAGACTTGCCATAAGGGACCTTGTGATACCGGCAAATGCACACAGCCGTGCATGGAGAAGCGTCCGAGCTGCGGGCACGCGTGCGCGGCGGCGTGCCACGCGGGCGCGACGGGCCCGGCCGCCGCGTGCCCCAGCCCCGCGCCCTGCCGCCGCCCCGTGCGGGCCACCTGCCCCTGCGCCAGGAGACATGCCGAACGGCCCTGCTGCGACAATGCTAGGGATTATGCCAAGATGATGAGCGCTCTCGCAGCTACTAAGATGTCTGAAGGTGGCTCAGTAGATCTCTCTGACGTACATCGTCCTGGCAGCATGCTTAAAACTCTGGAGTGCGACGACGAGTGCCGCGTGGAAGCCCGCACGCGTCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCGGCCAAGCTCGCGCCGCGCTACAGCGAGCACGTGCGGGCCACCGCCACGCGCGAGCCCGCCTTCGCGCACCAGATACACGACAAGCTCACCGAGCTCGTGCAGCTCGCCAAGAAGTCAAAACAGAAGACGCGCGCTCACTCGTTCCCGTCTATGAACTGGCAGAAGCGCCAGTTCATACACGAGCTGTGCGAACACTTCGGCTGTGAGAGCGTGGCGTACGATGCCGAGCCCAACAGGAATGTTGTCGCCACCGCCGATAAGGAGAAGTCGTGGCTGCCAGCCATGAGCGTGCTGGAGGTGCTAGCACGTGAAGCGGGCAAGCGTCGCGTGCCGGGGCCGGTGCTGCGCGCGCCGCCCGCGGCCGCCGCGCACGCCGCGCCCGCGCAGCTGCACGCCGCGCACTCGCAGCCGCTGCACAAATCGACAAGCGGCTGGGCGACCCTAACATCGACGAACGCGTGGGCGGCCCGCAGCCAGCCCAAGCCGCCGCCGCCGGCGCCCGCGCAGCCGCAGCCCGAGAAGATCGACTACTTCGACAACCCGCCCGACAACTAG
- Protein Sequence
- MTQRERLTEQLDKGTLECLVCCDRVKQFDQVWSCTNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPGEYRCMCGAVRAPEYQRGAAGAHTCGRACRRTRACPHPCTLLCHPGPCPPCQATVVKQCGCGAETRSVTCSSKLPQVCGRVCGRTLQCGVHTCKSDCHEGPCESCTETVTQVCYCPAGKSRSVACTLESGGAARWACGEACGRVLACGAHVCRASCHPPPCQPCAMLPEHVKTCPCGNTQLPKDSRKSCTDPIPLCGNICAKPLQCGPAGDRHFCKLSCHEGPCPECPDKTVLQCRCGHSSREVPCVELPEMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLACQAHRCEDFCHTGHCAPCPRVSFDELTCECGAEVVLPPVRCGTRPPACSAPCTRVRACRHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCMEKRPSCGHACAAACHAGATGPAAACPSPAPCRRPVRATCPCARRHAERPCCDNARDYAKMMSALAATKMSEGGSVDLSDVHRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATATREPAFAHQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPAAAAHAAPAQLHAAHSQPLHKSTSGWATLTSTNAWAARSQPKPPPPAPAQPQPEKIDYFDNPPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -