Apul024326.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997791.1:2311911-2326109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0099 1 10.7 0.3 2 23 729 751 728 752 0.90 2 10 0.093 9.6 7.6 0.1 3 23 774 795 772 795 0.94 3 10 3.2e-05 0.0033 18.5 1.0 2 23 818 839 817 839 0.96 4 10 0.00095 0.098 13.9 0.2 1 23 843 865 843 865 0.98 5 10 0.00077 0.079 14.2 0.1 1 23 870 893 870 893 0.92 6 10 8.8 9.1e+02 1.4 0.4 2 21 900 919 899 922 0.79 7 10 0.00011 0.012 16.8 1.6 1 23 929 952 929 952 0.97 8 10 0.057 5.9 8.3 3.1 1 23 958 980 958 980 0.93 9 10 8.2e-06 0.00085 20.4 3.6 1 23 986 1008 986 1008 0.99 10 10 3.6e-05 0.0037 18.4 3.6 1 23 1014 1037 1014 1037 0.98
Sequence Information
- Coding Sequence
- ATGACTGAAAATAAGGGCAAAGGGCCATTAATAGACCCTGGTTTGTGTCGCTGTTGCGGGAATATAAAAAAATGTAGAGTTTTAAATGTGGAATATGAGAGTTTTGGACAAAAGGAGGTCTATTCTGAAATGCTGATGGACGGATTTGGGTTACTGTTGTCCCACCTCGACGGCCCAATCTCCGAGCGTCTAGTCTGCGCGACGTGCGTCACTCGGGTACGAGACGCGCTCGCCTTCCGGCGGCAAGTGCTCATCTGTGAGGAGGCCTTCCTCAAGATGAAGATATTTGATGCTTCGGGCGATGTAGTGATACATGGTATTAGTGATGTGCAGGTACGCGCAGCAGCGACCAACGCTGATTTAACAATTGAAAACCTTGTCTCATTCTTGTCCACCTATGTTAAGCCCGCCCGCAGATCTGATAATAGTCGTAACCCAGAAAAATCGGTCCCGTCTAGCACTAGTATGACCAAAAAGCGTCACTCCAATGGATCGAGTCGGGCTGATAACAAATGTTTTACTTGCGGTCAGACTGGTCATTTTAAACATCTATGTCCTAATAAACGTAATTTTTCGGATAAGCACAATGGACGCGACACGCTCGATAGGCGCGACAAGCATGATAACAGCTCCAGACCCGTTTGTTCTTTTTGCAAGAAGTTAGGGCATAAGGAAAGCGATTGCTTTACTAAAGCTCGGTCCGAAGCTCAAAATAGCAGTAACAACAACAATCAGCGTAAGGTTAACCTGTGTAGTGAGCTTTCTAAAGCGAGTGATAACAATGACATATGTACAGCTGTGATCCAAGGTATACCAGTTGACGTTCTCATAGATAGTGGCGCGCTCAATGTGTCGTTGATATCATCCGCAGTGGTAGATTACTTCTCCGGTTCTCGAAAACCAATTAACTGCGCTCTCAAAGGAATAGGAGATAGGGGGTTTGTAGCTCGCGAGTACATTACTCTTACGGTCGAATTTAGTGAGATCGCACTTGAGGTCGACTTTGTTATTGTACCCGCGTTGTACATGAATACTCCGATCATAGTTGGGACTGATGTGCTTAATCGTGATGGCGTTACGTTCATTCGCACGAAACATGGACAGCATTTGACCCGTTCACCTGACAACGTTTTAAAAGTAAATGCGGTGACGAAGTGCGAAGTCGACAAAGTAAATACGCCTCTTAAAGGTGCAGAGCTTGCAAAGCTGATGGCTGTTCTTAGAGATGTGTGCTTGATCGAGAGTGCGAGGTGGCGTGCCTTGCCGGTTGATGACGTGCTGCCTAAGTGTCGGCAAGCTCAGGAGGTCACGGAAGGCAGGGCATTCCGAGTGTCCGGTTGCAGCAGGAGCGTTCCCTCATGGCGGTATGGGCGCTACCGCAGTTCAGGCGCTGTCCTGGCAGGCGTAGTCCTGGTTCACGCATCACCGTGGTTCGGGCACTGTCCCGGTTCAGGCGCTGTCCTGGCAGGCGTAGTCCTGGTTCACGCATCACCGTGGTTCGGGCACTGTCCCGGTTCAGGCGCTGTCCTGGCAGGCGTAGTCCTGGTTCACGTTTTTAACGTGGGAACTTGCAAGTTCAAAATTGCGATGATGACGACTTTGCCGATGCTAGTGGACCCTCAGGTACAGCTTCTGCGGGTCCTGCTAACGCTTCTGCAAATCCTACGGGCGAAGACGGGGAACGAAGATTCTCCAGTCCTCCAGAAGACGTCTCCGGTGCAGCCGAGGACGGTGCACGATCCCACAGACAATCAGCCAGACACCATCCAAACGGACTGCCTATCCAAAGTACACGTGGAAGTCGTGAAGCAGGAACCTTTAGACATGAGTGCTGATAGCATGGATGACTCTGACGCACTGGCAGACGCTCCAGATAACGAAAATAAATTAGATGAAAATAAGCAAGAAGAAATGGACCAAGATTCTAACGACGACCTTCCTTTAAAACATATAACCGAAAAAAAACTGACCATAGACAAAGAAGAAGTGAAGTTAGGAGAAAGCATAGAGAAGGAACAAGTCTTAAGGCCTGCATCACCAGTTATAGCTAAAAAGAAGCTCCCGATGTCGAAAGTACAACAACTAATTCGAGAAAGAGACCCAACATACATGACAGAGACAAACATACTAACTATAGTAGAATACTCATTTGTCTGTCCATTCAAATGTCGACATAACCACCTCATATGTTACTACTGTGGCCAAACGTTTTCAGACCCAGCCATCCTAAGAGACCACACAATACAAAACCACCATCCAAAAAAATTTAAAGTCACGGAACATAAGAACATGATAAAAATCGATTTAACAAGAATCGATTGTCGATTGTGCGGCGAAAAAATCGATAAGTTAGACGATTTTAAGCGGCACATCGCTAGTGAACATAAGAAGAAGTATTACTTCGATTATAAGGATTCGGTGTTGCCTTTTAAATTAACTAGGGATGAGCTTAAATGTGCGATTTGTGATAAGATGTTTCCTTACTTTCATGCGTTAAATAAACACATGAACGAGCATTTTAGTAACTATGTTTGTGAAACTTGTGGACTGGGTTTCGTAGACAAAGGCCGCTTCGTAATGCACCAGCAGCGGCACGAAGCCAGCGACTTCCCGTGCCCCGACTGCGGCAAGGTGTTCCGAGCGCTCTACAACCGCGACCTGCACATAGACCGAGTGCATCGCAAACGCGGCCGCGTTTACTGTCCTAAATGCGACATCAAGCTGATGTCGCACCCTCAGAAGCTTAAGCATCTAGTTGAGGTACACGGAGAAGAGCCTCTTAGTTTTCCGTGCAACTTGTGTGATAAGATATTTGAGACGCGACGGACCTTCACTATACATAAACGAAAAGATCATCTCAAGGATTATAGATACGAATGCCAATGCTGCGGCCAGAAGTTTTTCACGCGCTTCGCCTTAAACAACCACATGCCAACTCACACTGGCGAGAGGAACTTCAAGTGTAAGGTCTGTGAGAAGTGCTACCCGCGTCTTAAGACTCTGAAGGACCATATGCGAATACACACGAACGATAGAAGATACCGCTGCCACGTGTGTGGACAGGCCTTTATACAGAACTGTAGTCTGAAAGGTCACATGAAAAGCCAGCATCCGGAATATGAAATACGGATGTGA
- Protein Sequence
- MTENKGKGPLIDPGLCRCCGNIKKCRVLNVEYESFGQKEVYSEMLMDGFGLLLSHLDGPISERLVCATCVTRVRDALAFRRQVLICEEAFLKMKIFDASGDVVIHGISDVQVRAAATNADLTIENLVSFLSTYVKPARRSDNSRNPEKSVPSSTSMTKKRHSNGSSRADNKCFTCGQTGHFKHLCPNKRNFSDKHNGRDTLDRRDKHDNSSRPVCSFCKKLGHKESDCFTKARSEAQNSSNNNNQRKVNLCSELSKASDNNDICTAVIQGIPVDVLIDSGALNVSLISSAVVDYFSGSRKPINCALKGIGDRGFVAREYITLTVEFSEIALEVDFVIVPALYMNTPIIVGTDVLNRDGVTFIRTKHGQHLTRSPDNVLKVNAVTKCEVDKVNTPLKGAELAKLMAVLRDVCLIESARWRALPVDDVLPKCRQAQEVTEGRAFRVSGCSRSVPSWRYGRYRSSGAVLAGVVLVHASPWFGHCPGSGAVLAGVVLVHASPWFGHCPGSGAVLAGVVLVHVFNVGTCKFKIAMMTTLPMLVDPQVQLLRVLLTLLQILRAKTGNEDSPVLQKTSPVQPRTVHDPTDNQPDTIQTDCLSKVHVEVVKQEPLDMSADSMDDSDALADAPDNENKLDENKQEEMDQDSNDDLPLKHITEKKLTIDKEEVKLGESIEKEQVLRPASPVIAKKKLPMSKVQQLIRERDPTYMTETNILTIVEYSFVCPFKCRHNHLICYYCGQTFSDPAILRDHTIQNHHPKKFKVTEHKNMIKIDLTRIDCRLCGEKIDKLDDFKRHIASEHKKKYYFDYKDSVLPFKLTRDELKCAICDKMFPYFHALNKHMNEHFSNYVCETCGLGFVDKGRFVMHQQRHEASDFPCPDCGKVFRALYNRDLHIDRVHRKRGRVYCPKCDIKLMSHPQKLKHLVEVHGEEPLSFPCNLCDKIFETRRTFTIHKRKDHLKDYRYECQCCGQKFFTRFALNNHMPTHTGERNFKCKVCEKCYPRLKTLKDHMRIHTNDRRYRCHVCGQAFIQNCSLKGHMKSQHPEYEIRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -