Apul008212.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- Sall1
- Assembly
- GCA_905475315.1
- Location
- FR997773.1:11602141-11612198[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.7 4.9e+02 2.3 0.2 2 23 6 27 5 27 0.94 2 13 0.14 14 7.1 0.2 1 23 992 1015 992 1015 0.88 3 13 2.9e-05 0.003 18.7 2.2 2 23 1120 1141 1119 1141 0.97 4 13 0.00035 0.037 15.3 2.8 1 23 1147 1169 1147 1169 0.98 5 13 0.018 1.9 9.9 3.0 2 23 1176 1197 1175 1198 0.94 6 13 0.046 4.7 8.6 1.2 5 23 1211 1229 1210 1229 0.96 7 13 0.02 2.1 9.7 1.0 3 23 1236 1257 1235 1257 0.96 8 13 0.0014 0.15 13.4 0.5 2 23 1277 1297 1276 1297 0.98 9 13 0.0023 0.23 12.7 1.1 1 20 1303 1322 1303 1325 0.88 10 13 0.0046 0.47 11.8 1.3 1 23 1333 1355 1333 1355 0.98 11 13 0.0049 0.5 11.7 7.2 1 23 1361 1383 1361 1383 0.98 12 13 6e-06 0.00062 20.8 1.4 1 23 1389 1413 1389 1413 0.98 13 13 0.00089 0.092 14.0 5.1 1 23 1419 1441 1419 1442 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTTGTGCAGTGTCCCGTGTGTACGCTGTACCTGCACAATGGGATTACCCTGGAGTCTCATTTGGATACACATCCAAAAGACCAGGTTATAAGGGCATTGTGTAGTTTAACATCAGGCAAAGGCTCTAATTATGGAACCAGGATTTCCACACCCATGCATTCAGAGCGATCCTTTAGGAGTAGGTCACGGACACCTGCTACTGATGACTGTGCCAAATGGAATGGAAACCGAGGTGTGGAACATGATAGATTTTGGAGGAGAACACCTAGCAGATCTAAGAATGCTCCTCAGTCTAACCCATCCAGAAATGCCACTCCAGATATTAGGATTATGGATGTTAACTTTGAAAACCATTTTGTTTCTGGCACAGGATCAGGACAGCATGCAAGCAATTCTTTTCATATGAGAAATGATAAACTCCAAGAAACCTTTCAGACACCTCCAGTGGCAGACTTTGATCCACAGTATGCCTACTATCCAGATCAACAGGAAGATAGAGAGATCAAATTTTCCCGGAGTGCAGAATACAGTGCTATGGATGGAAACAATTTGTTTGCTTACAATGTGCCAACTATGGGAGGGACAGGTGTAAAGTTGGTACCAGCAGTGCCTAGAAGAGGAAATGACCTTGTCAAAGTTCTGCCAAAACCTAATAATATTCTCCTTAAAAGTAACATGAGTGGTGTTCAGTACTTGCCACCTGGGGTCAAGCCCATGCATGTTGTGTTACCATCAGCACCAGCATTTGTACATAAAAGTTTGCAGAACAACATGATTGTGTCAAGCAATTTACAAAACACGCAAGTGCAAATGAACACCAAATCAGTAACACCCCCTATAGCTAGCCAACTTAACCAAATAACTTCTGGTGCGTTCCCTCCAGCATCAACTGTTGTTACCCAAAATTCACAAATAATTTACAGAGAAATGGTTCACAGCATAGATGGTAAGCCTTTTTTAACTTCCATGCCCACCATTCTGGGTGGTGACAATGTTACTAATTTAGCTCAAACAAGCACAATGTATCAGAATGTGATGGTAGTGGACCCATTTGGAAATACCTCATGTATGTACTCAACACCTCAACAAGTGATGGCTAAAACTTGTCCTACGAACATTTATAATGACAGTGGACCTCCTTTACCTAGTATACACATGGATAAATCAGAGAATATCAATGACCCTAAAACAATTGTGATTGAAGTAGGCCCTCTTGTAACATCTTCTGAAAATGAAGTGGCAATATGTTCGGTAAAACCACAGCAAAACACAAGAATTCCAGTGGAGAAAACTGAGAAAACCATGGAACCTGTAGACCCTAAATGTGAAACCCCAGGAACTAGTAAGGGCTTGAAAATATTAAGTAACATTAAGGTTGAAGTTCCAGTACAGCATCACAAAAATATGGTTAACACTGTTATGGACCTTACAGGATCTAGTGAGTCAGATTATGCTGTTGAAAGATCCGTCACACCTGAGAAGATTCTGCCTGATCTGGATGACAACAATCAGTTGATGTCTGATGACACCCAGCCATCATCAATATCTAGTGTTGATAGCATGGTCTCCCATACCTTTTCTGTGATAAAGAATGTTGGCAACCCCAGCAAAAGCTCTGGAGATACTAAAATTGACACAGACTTTTCAGACAGCTGTCCTGTTCCAGATTTAATTTGTAATGAGAAACCTTCCATATCACCTTGTAGTGAATTGTCCGAGAATGGCGACAATGCCACCGATCGTACCTCAATTTCTCCTAAACCCGAGAGTCGTGTAGTAAGCATAGAACTTCCAGAGAAGAAAATTCAGCTCTCTCAGAAGCCAGTTAGGCACAATACATTAAGACTGAACAATATTTATGTAAAGAAGCACAAGAAAGTTTTGAAAATTAAAAATGCTAAATCATTTCCTATAAATACTACAGTTAAAAGTGACACCACTCCGACGTCATCTGGGTGCAGATCGCCGGAAAAATTTAAAATGAATAAAATCCATAAAGGTGATAGAATAGAGGGTAAGGACAAGCCAAATCTCTTACAAACTATATCTGTGGAAGAGATCAAAGATCAGGATGACAACAATGACTTTGATGCTGACACAGAGGAACAATCTATGGATATAGAACCTGTAGCACCAACAAGCTTAGATCAGCCAGAAGTGTATGCTGGGAGCCTGGACTTGGTCCAAGTTAAAGAAGAAATTAACTCCAGTAACGAAGGGGGGTTCAGTAACGAGACGTTGACGTTAGACCGTGAGCTCACTCCTCTAGAAACTTTGAGACCAATCAACGTTGTTACATACGGAAATATACCAAACCAAGACTTTAATGAGGAATCTAACGACAGAGAGTTACTAGACCTCGAGGCTGCCTCCAAAAATAAACAGTTCGTAAGTATGATGAACGAGAACTACTTTGGGGATAATATTTACGCAGACTACTTTACTCCCGATCGTGTCGAGGCGTTCGACGCCGAGCGCGAAGCGGCAACCTTCAAGGAAGGCCCGAAAGAAGGTATATATCTCTGGGGCGAGCCATCTCAAAAGGAAAATGAGTTTGTTCTGCCCAACTTTATACATGAGAGTTACAAAATAGCTGAGAGTAATGGAATAGATTATTCGGAGTTGGGTGTTAGAGAAGTGCAGGCTGATGTGGAAGTGGATGGGTGTGAGCGAGACAGCAAAGCTGACGTGCTAAGTGAAAGTCGCAGCGAGAGCGAGGCGCCCATGAACATTTGCGCGGACGAGCGCATGCCGCCGCGCGGTGAGCTCAGCGGCCAGGAGAGCAACGGAGACATGGAGTCACCTTGGAGTGGAATGTACACGGAGGTGCCGCCCGCGGAGCCCTACGACCTGATCGCGCGGGAGAGCTGGGTCTCCGATGGCTCTGAAGTCGATGCCAGCGAGAAGAGGGAACCCATTGAGGAGGAGCTCCCTGTAGTCCCCCCGTTCCCGAAGTCTCGCGTGCACACGTGCGTGCCGTGCGGCGCCAAGTTCCCGACGCTGAAGGAGCTGCGCGCGCACAAGGCGCTCGCGCACGCGCTCCCCACCTGCTCCGACACCAAGACCTCGTACTCGCGCCTCGTCACCGCCAGAACTATTAAGAAGGAGGAGAAACCTGATAATATCACTTTGACAAACACCCTAATGACAATGGACTCAAAAGAATCAATAACATCAACAATCTTAGAAGTCTACGACACTATGGATGAAGCTAAACCGAAAATAGAGGTGGACCGCATCATAAAGCAGGAGACAAAACGAAGACGGAAGGATTACACGTGTAACACGTGTAAAGTGGACCAGCAGACGGAGGCGGGCTACCACGCGCACCTGAAGGTGCACCCGCTGGAGTGCCTGACGTGCGGCAAGTGCTTCTTCCGCAGGGCCAACCTCGCGATGCATCTCAAGACGCATCTAGGGATTAAGAATTTTAAATGCGAAGTGTGCGAGAAGCGGTTCGGCACGCGGCAGAAGCTGACGGAGCACCACAATGTGCACACGGGCCGCACGCCCATCAAGTGCACCATCTGCAGCGACACCTTCCGCAGATACTCCAACATGGTGCAACACAGAGACCGTCACCACCTAGCCAAGCGCGCAAAGGTGCGCGACTTCGTGTGCCAGTGCGGCGTGGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACCAGGAGACGCACGCACCGCGGCCGCGCGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCGCGCGCCATCTGCGCCGCAAGCACAACCACCACTTCCTGCCGCCGCAGGCCGGGTCCGACCGCCCCGCGCCCGGCAACGTGCAGTGCCCCGTCTGCAAACAGGTGTACCTGAGGTCAAACTTACGGACGCACTTACAAACGCACAGCGGCCAGCGGCCTTTCATGTGCATCATTTGCAGCAAGTCCTTCACGACCAAGTGGAACCTGAAGCTGCACCGCTGGACACACATGAGCCGCTCGGCCAAGCCCTACAAGTGCTCGCTGTGCAAGGGCGCCTTCATCCGCCACACCGAATACATATCACACATGAACGCGCACAAGTCCGTGCGGCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGGCGGAGTGCGGCAAGTCCTTCCACCGCAGCTACTACCTGTCCGAACACATGAAGGTGCACAGCGGCGCGCGCCCCTTCTCCTGCAACATCTGCGGTAAGACCTCCAGCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGCGAGCCCGTCGCCACGGAGGCGTAA
- Protein Sequence
- MDQLVQCPVCTLYLHNGITLESHLDTHPKDQVIRALCSLTSGKGSNYGTRISTPMHSERSFRSRSRTPATDDCAKWNGNRGVEHDRFWRRTPSRSKNAPQSNPSRNATPDIRIMDVNFENHFVSGTGSGQHASNSFHMRNDKLQETFQTPPVADFDPQYAYYPDQQEDREIKFSRSAEYSAMDGNNLFAYNVPTMGGTGVKLVPAVPRRGNDLVKVLPKPNNILLKSNMSGVQYLPPGVKPMHVVLPSAPAFVHKSLQNNMIVSSNLQNTQVQMNTKSVTPPIASQLNQITSGAFPPASTVVTQNSQIIYREMVHSIDGKPFLTSMPTILGGDNVTNLAQTSTMYQNVMVVDPFGNTSCMYSTPQQVMAKTCPTNIYNDSGPPLPSIHMDKSENINDPKTIVIEVGPLVTSSENEVAICSVKPQQNTRIPVEKTEKTMEPVDPKCETPGTSKGLKILSNIKVEVPVQHHKNMVNTVMDLTGSSESDYAVERSVTPEKILPDLDDNNQLMSDDTQPSSISSVDSMVSHTFSVIKNVGNPSKSSGDTKIDTDFSDSCPVPDLICNEKPSISPCSELSENGDNATDRTSISPKPESRVVSIELPEKKIQLSQKPVRHNTLRLNNIYVKKHKKVLKIKNAKSFPINTTVKSDTTPTSSGCRSPEKFKMNKIHKGDRIEGKDKPNLLQTISVEEIKDQDDNNDFDADTEEQSMDIEPVAPTSLDQPEVYAGSLDLVQVKEEINSSNEGGFSNETLTLDRELTPLETLRPINVVTYGNIPNQDFNEESNDRELLDLEAASKNKQFVSMMNENYFGDNIYADYFTPDRVEAFDAEREAATFKEGPKEGIYLWGEPSQKENEFVLPNFIHESYKIAESNGIDYSELGVREVQADVEVDGCERDSKADVLSESRSESEAPMNICADERMPPRGELSGQESNGDMESPWSGMYTEVPPAEPYDLIARESWVSDGSEVDASEKREPIEEELPVVPPFPKSRVHTCVPCGAKFPTLKELRAHKALAHALPTCSDTKTSYSRLVTARTIKKEEKPDNITLTNTLMTMDSKESITSTILEVYDTMDEAKPKIEVDRIIKQETKRRRKDYTCNTCKVDQQTEAGYHAHLKVHPLECLTCGKCFFRRANLAMHLKTHLGIKNFKCEVCEKRFGTRQKLTEHHNVHTGRTPIKCTICSDTFRRYSNMVQHRDRHHLAKRAKVRDFVCQCGVVFHSRAKLRWHQETHAPRPRACLYCSDKFVHAASLARHLRRKHNHHFLPPQAGSDRPAPGNVQCPVCKQVYLRSNLRTHLQTHSGQRPFMCIICSKSFTTKWNLKLHRWTHMSRSAKPYKCSLCKGAFIRHTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00000602;
- 90% Identity
- -
- 80% Identity
- -